Cp4.1LG15g05470 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g05470
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMyb family transcription factor family protein
LocationCp4.1LG15 : 6311296 .. 6312369 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGTCAATCAGCTCACCTATTATCTAGGCTCGTCTACTCTATATTTGCTGGCTACTTAGAATGCACACAAATGTGGCTATGTCAAGAGCATAACTCTGATAAAAATCATTAAGAATCACGACTTTTGACATAAACCCTTATTGTAACACTCGAGTAAGGAAGAGATACATGAATGAACCAAGACCATATCTGAATGGGAAGGAACTTGAGAATAGGATAGGTAAGAAGGACTTCAAAAAATTAAAAGTCACTACTTAAACCAACTAGGTGCACTTTTCTTTTCAAGTGGCTCAATCATGAGAACTTGATGGTCAAGCATGCTTTACTTAGAGTAATTCTATGTTAAGCGACCTCCTACTAATTTTCCTGTGATGCATGTGTGTAAGGACAAAGCATGCTGAAAGGACTCATGTTGGTTTGTGGGAATAGTCTTCACTCATAAAAAGTAAAAAGTAGGTACCGTGACTATGTCGCAGTGGATAGAGAGGAATGTTGGAGCCATCAGGTGACGAATAAAAATTTTGAATCCTAAACGTGAGTAGTTACATTTATAGTTTATGGTTTCTCAATCAAAAAGATAAAAAAAAAGTGTTTGAAAATCGCTACCATATGACCGACAATTCTATATCATTTAATGTACGAGAAAGAAACGATAAAAAGAAAAAATACTATAAATTGCATCCCGTTACCAGGTGAACATAAATTTTAAAATCTACATTCAATCGATATTATGAAATAGTTACGTCATGGTCACTTTATCGAATAATTTTTTCCTATCAACCCTCTTGTTTCGTGCTTATAAAGAGCTTCCATTGCCCACTCTTTGCCACACATCCTTCGTTCTAACCCATTTGCCCTAATTTTCTTGTTGAACTTAGCATTTACCAATGGCTTCAATGTCTTCCCATGGATCAGCTGATACATGGACTGTAAAGCAAAACAAGGCCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCAATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGCCATTATGCACTTCTTGTCGAGGAT

mRNA sequence

ATGCTCCATTTACCAATGGCTTCAATGTCTTCCCATGGATCAGCTGATACATGGACTGTAAAGCAAAACAAGGCCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCAATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGCCATTATGCACTTCTTGTCGAGGAT

Coding sequence (CDS)

ATGCTCCATTTACCAATGGCTTCAATGTCTTCCCATGGATCAGCTGATACATGGACTGTAAAGCAAAACAAGGCCTTTGAGCAGGCATTGGCAGTTTATGATCAAGACACACCTGACCAATGGCTGAATGTTGCGAAGGCTGTTCCGGGAAAAACTGCCGAGGAGGTCGAAAGCCATTATGCACTTCTTGTCGAGGAT

Protein sequence

MLHLPMASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED
Homology
[Close]
BLAST of Cp4.1LG15g05470 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-16
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 8  SMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 67
          SMSS+GS  +WTVKQNKAFE+ALAVYDQDTPD+W NVA+AV GKT EE +  Y LLV D
Sbjct: 5  SMSSYGSG-SWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRD 62

[Close]
BLAST of Cp4.1LG15g05470 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 7  ASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 66
          +SMSS  S  +WT KQNKAFEQALA YDQDTP++W NVAK V GKT EEV+ HY LLV+D
Sbjct: 4  SSMSSQSSG-SWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 62

[Close]
BLAST of Cp4.1LG15g05470 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-16
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 

Query: 10 SSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 67
          S+ GS   W+ K+NKAFE+ALAVYD+DTPD+W NVA+AV G+T EEV+ HY +LVED
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59

[Close]
BLAST of Cp4.1LG15g05470 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.0e-16
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MAS SS  S+ +WT KQNK FE+ALAVYD+DTPD+W NVAKAV  K+AEEV+ HY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-15
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MAS +S  S   WT  QNK FE+ALAVYD+DTPD+W NVAKAV GKT EEV+ HY +LVE
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-20
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASMSSHGS  TWTV QNKAFE+ALAVYDQDTPD+WLNVAKAV GKTAEEV+ HYALLVE
Sbjct: 1  MASMSSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. TrEMBL
Match: A0A0A0K3K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-18
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASM++HG + TWT+ QNKAFE+ALAVYD+DTP++WLNVAKA+ GKT EEV+SHY LLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 66 D 67
          D
Sbjct: 61 D 61

[Close]
BLAST of Cp4.1LG15g05470 vs. TrEMBL
Match: A0A161ZSS6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022977 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASMSSHGS   WTVKQNKAFE+ALAVYD+DTPD+W NVAKAV GKTAEEV+ HY +LV 
Sbjct: 1  MASMSSHGS---WTVKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYEILVA 58

Query: 66 D 67
          D
Sbjct: 61 D 58

[Close]
BLAST of Cp4.1LG15g05470 vs. TrEMBL
Match: V4SCD4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029663mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-17
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 7  ASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 66
          +SMSS GS+ +WT +QNKAFE+ALAVYD+DTPD+W NVA+AV GKTA+EV+ HY LLVED
Sbjct: 4  SSMSSRGSSGSWTAEQNKAFERALAVYDKDTPDRWYNVARAVGGKTADEVKKHYELLVED 63

[Close]
BLAST of Cp4.1LG15g05470 vs. TrEMBL
Match: A0A067EDU4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034615mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-17
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 

Query: 7  ASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 66
          +SMSS GS+ +WT +QNKAFE+ALAVYD+DTPD+W NVA+AV GKTA+EV+ HY LLVED
Sbjct: 4  SSMSSRGSSGSWTAEQNKAFERALAVYDKDTPDRWYNVARAVGGKTADEVKKHYELLVED 63

[Close]
BLAST of Cp4.1LG15g05470 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-17
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 1 

Query: 8  SMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 67
          SMSS+GS  +WTVKQNKAFE+ALAVYDQDTPD+W NVA+AV GKT EE +  Y LLV D
Sbjct: 5  SMSSYGSG-SWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRD 62

[Close]
BLAST of Cp4.1LG15g05470 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-17
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 7  ASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVED 66
          +SMSS  S  +WT KQNKAFEQALA YDQDTP++W NVAK V GKT EEV+ HY LLV+D
Sbjct: 4  SSMSSQSSG-SWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQD 62

[Close]
BLAST of Cp4.1LG15g05470 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-17
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MAS SS  S+ +WT KQNK FE+ALAVYD+DTPD+W NVAKAV  K+AEEV+ HY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-16
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MAS +S  S   WT  QNK FE+ALAVYD+DTPD+W NVAKAV GKT EEV+ HY +LVE
Sbjct: 1  MAS-NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. TAIR10
Match: AT4G36570.1 (AT4G36570.1 RAD-like 3)

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHY 61
          MAS S   SA +WT K+NK FE+ALA YDQDTPD+W NVA+AV GK+AEEV  HY
Sbjct: 1  MASNSMSSSA-SWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHY 54

[Close]
BLAST of Cp4.1LG15g05470 vs. NCBI nr
Match: gi|659092346|ref|XP_008447024.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-21
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASMSSHGS  TWTVKQNKAFE+ALAVYDQDTPD+WLNVAKAV GKTAEEV+ HYALLVE
Sbjct: 1  MASMSSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. NCBI nr
Match: gi|778725458|ref|XP_004151125.2| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-20
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASMSSHGS  TWTV QNKAFE+ALAVYDQDTPD+WLNVAKAV GKTAEEV+ HYALLVE
Sbjct: 1  MASMSSHGSG-TWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

[Close]
BLAST of Cp4.1LG15g05470 vs. NCBI nr
Match: gi|700188845|gb|KGN44078.1| (hypothetical protein Csa_7G169590 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 45/61 (73.77%), Postives = 55/61 (90.16%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASM++HG + TWT+ QNKAFE+ALAVYD+DTP++WLNVAKA+ GKT EEV+SHY LLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 66 D 67
          D
Sbjct: 61 D 61

[Close]
BLAST of Cp4.1LG15g05470 vs. NCBI nr
Match: gi|1021031876|gb|KZM89660.1| (hypothetical protein DCAR_022977 [Daucus carota subsp. sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-17
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASMSSHGS   WTVKQNKAFE+ALAVYD+DTPD+W NVAKAV GKTAEEV+ HY +LV 
Sbjct: 1  MASMSSHGS---WTVKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYEILVA 58

Query: 66 D 67
          D
Sbjct: 61 D 58

[Close]
BLAST of Cp4.1LG15g05470 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 6  MASMSSHGSADTWTVKQNKAFEQALAVYDQDTPDQWLNVAKAVPGKTAEEVESHYALLVE 65
          MASMS+HGS   WT KQNKAFE+ALA+YD+DTPD+WLNVAKA+ GKT EEV+ HY LL+E
Sbjct: 1  MASMSAHGSG-VWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 66 D 67
          D
Sbjct: 61 D 60

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g05470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RADL2_ARATH1.8e-1672.88Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1[more]
RADL1_ARATH1.8e-1670.00Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1[more]
RAD_ANTMA5.3e-1664.91Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1[more]
RADL5_ARATH9.0e-1668.85Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1[more]
RADL6_ARATH2.6e-1567.21Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1[more]
BLAST of Cp4.1LG15g05470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K348_CUCSA3.2e-2086.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1[more]
A0A0A0K3K5_CUCSA1.0e-1873.77Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169590 PE=4 SV=1[more]
A0A161ZSS6_DAUCA1.1e-1778.69Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022977 PE=4 SV=1[more]
V4SCD4_9ROSI5.7e-1771.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029663mg PE=4 SV=1[more]
A0A067EDU4_CITSI5.7e-1771.67Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034615mg PE=4 SV=1[more]
BLAST of Cp4.1LG15g05470 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21650.11.0e-1772.88 Homeodomain-like superfamily protein[more]
AT4G39250.11.0e-1770.00 RAD-like 1[more]
AT1G19510.15.1e-1768.85 RAD-like 5[more]
AT1G75250.11.5e-1667.21 RAD-like 6[more]
AT4G36570.14.0e-1467.27 RAD-like 3[more]
BLAST of Cp4.1LG15g05470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092346|ref|XP_008447024.1|9.3e-2188.52PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
gi|778725458|ref|XP_004151125.2|4.6e-2086.89PREDICTED: protein RADIALIS-like 1 [Cucumis sativus][more]
gi|700188845|gb|KGN44078.1|1.5e-1873.77hypothetical protein Csa_7G169590 [Cucumis sativus][more]
gi|1021031876|gb|KZM89660.1|1.6e-1778.69hypothetical protein DCAR_022977 [Daucus carota subsp. sativus][more]
gi|659092351|ref|XP_008447025.1|6.3e-1773.77PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g05470.1Cp4.1LG15g05470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 14..66
score: 2.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 17..63
score: 7.
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 13..61
score: 1.96
NoneNo IPR availablePANTHERPTHR24078DNAJ HOMOLOG SUBFAMILY C MEMBERcoord: 18..66
score: 6.5
NoneNo IPR availablePANTHERPTHR24078:SF177PROTEIN DNJ-23-RELATEDcoord: 18..66
score: 6.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g05470ClCG02G004950Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g05470Lsi11G011090Bottle gourd (USVL1VR-Ls)cpelsiB199
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g05470Wax gourdcpewgoB0316
Cp4.1LG15g05470Wax gourdcpewgoB0338
Cp4.1LG15g05470Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g05470Cucurbita pepo (Zucchini)cpecpeB270
Cp4.1LG15g05470Cucurbita pepo (Zucchini)cpecpeB274
Cp4.1LG15g05470Cucumber (Gy14) v1cgycpeB0245
Cp4.1LG15g05470Cucumber (Gy14) v1cgycpeB0992
Cp4.1LG15g05470Cucurbita maxima (Rimu)cmacpeB119
Cp4.1LG15g05470Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g05470Cucurbita maxima (Rimu)cmacpeB561
Cp4.1LG15g05470Cucurbita maxima (Rimu)cmacpeB616
Cp4.1LG15g05470Cucurbita moschata (Rifu)cmocpeB096
Cp4.1LG15g05470Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g05470Cucurbita moschata (Rifu)cmocpeB514
Cp4.1LG15g05470Cucurbita moschata (Rifu)cmocpeB566
Cp4.1LG15g05470Wild cucumber (PI 183967)cpecpiB236
Cp4.1LG15g05470Cucumber (Chinese Long) v2cpecuB232
Cp4.1LG15g05470Bottle gourd (USVL1VR-Ls)cpelsiB195
Cp4.1LG15g05470Watermelon (Charleston Gray)cpewcgB229
Cp4.1LG15g05470Watermelon (97103) v1cpewmB268
Cp4.1LG15g05470Watermelon (97103) v1cpewmB270
Cp4.1LG15g05470Melon (DHL92) v3.5.1cpemeB210
Cp4.1LG15g05470Melon (DHL92) v3.5.1cpemeB224
Cp4.1LG15g05470Cucumber (Gy14) v2cgybcpeB185
Cp4.1LG15g05470Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g05470Melon (DHL92) v3.6.1cpemedB253
Cp4.1LG15g05470Melon (DHL92) v3.6.1cpemedB262
Cp4.1LG15g05470Silver-seed gourdcarcpeB0252
Cp4.1LG15g05470Silver-seed gourdcarcpeB0436
Cp4.1LG15g05470Silver-seed gourdcarcpeB1241
Cp4.1LG15g05470Cucumber (Chinese Long) v3cpecucB0289
Cp4.1LG15g05470Cucumber (Chinese Long) v3cpecucB0322