Lsi11G007520 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G007520
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionEarly light-induced, chloroplastic
Locationchr11 : 8446253 .. 8451238 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGGCTCTGTACAGCCAGCGATGAGAACTATTACACAAATGTCATTCTCCGGAAGATAAAGTGTCGATGTGGGCACCTGAAATCTATAAATGGATAAGTTTTCATGTAAGAACCCGCTTCACTTTGGAGATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACGGAACCTTCCGCCTTCTCAGTACCTGTCTTTCCGCCATACCCATCCTTCTGCTACTTTCTCCAGGTAATTTCGGGTTCTTCCTCAAATACCCATTTCTCCAATCGATGTAATTGATGGGGTTTCCCCCTTTTTCATCTCATGTGATTATATCTGTGTAATTGGGGTTTCTTTTCTTGCTTTTCATAAACCATGATTTTCTTTGTTTAATTGGAGCTTTGTGTCTAAACTTTTGTATGTTGTTAAAGTCTTTGCTCCAAATGGTGTTTGATGGTTTCTGGTAAATGTTACGAGCTACAGAGTGATAAATAAAAGCTTGTATTTCCCTTTTTAGGATTGATTTGATTGGAGTTTGAATTGCTCTGAGATGTGTTGGAATTTTTGTGTTCCGTGCTCTGATTATTGGTTAAGCCATTTAGATTTTCCCTGTTCTGATTTAGTTCGTCATGCTTTGAGAAGTCTGGTGCTTACTTTCATGAGTTGGGGACCTAGCTTAATGCTTCTTTTTGTATATGTCTGGTTGTTAAGTTTTTTCTCTGCTTGTTTTCGTTTTTTTTTGTAAGTGGGTAATGGAGCTTCTCTCCTTGCTTGCTCATGGCCACTAGTCGTCTCTGGAAGGCTTCGTCCACTTGAACAGCTCTAGGCAAAAACAGGGTTTTGAGTCATCCCGATTGATAACCATTTGGATTTTGATTTTTTGGGTTTTCAAAATTAAGCTTATTAAGTTTCTTTGTTTTGTTATTCATCTCCAATAATGTTTTAAAAAAGGAAGCCAAGTTTTGAAAACTTAAAAAATGTTAGTTTTTACTTGTTTTTGTTTTTCGGATTCAACTAAGAATTCACCATTTCTTAAAAACTGACAACCGTAGTGAGTTTCAGAAATAGAAAACTAAAAATGAAATCGTTACTAAATGGGGCCTAAACTTTCGTCCTAGGCAATTAAACCGTAAACTTTGTAGGGTATGTCTAAACATTCCGAGTAAGTAATAATTAATTTTGCATTACTCGTGTTTGAAACATGCCACGTGTTTTGACGTTTTCCCTTCAATGTTGATCCACTACTGATACGAAAAATTAGGTGGTTGTTGTACTTTGATCAGAAAGAATGTTATCTCTTTAGATTTGAGTTACAAATAGGATCAGATAAGAATGCTAATCACCAAGAAACTTATATAAAAGCTCTAAATGAGTGTTAAAAAATAAACCAGTACAGCTAGCCTGGTCGTCTCCTATTGTGAGCCTTCTTCACGGCTCTGTCTTACTGTAACCCTTGCTCTTTGTACATTCCTTCTGTGAAGGGGTCCCTTCTTTTCTCTAGCTGGTGGTTATAAATACACAGCATAATAAAGAAGGCTCTCCAGAATTTTGAGCTGAACACTCACGTGTCCGACGCTTACCTTGGAGAGGGCACTCCAGCCTTTTCAAGTGCCCCAAGTTGGCAAAATAAAAATTTATGGAACTTCCCTAAAAAATTTTTAATAGCTAAGTAAGACCTATATTAGATGCCCCCCCAGGCCGAACAAAAGAGGGGAGGCGAGGACTTCCCCCTAAGGACCAAGTGGATACAAAAAGGAGATCCAATTGATCAAGGTATGTACAAACTCATAATTACAAAAAGAATTTGAAGGAAAACACCAGACGGTAGTGAAGAGATGAATGGAATCCCAAATTTGGTCCAGTCTCGAGAACTTCTATTTGAAGACCCTTTGATTTCTCTAAAACCATAACCTTCAAATATTAGCATAAACACATTAGTTCACAAACCTTGGCTATACTTTTGAAGAGTCAACCCCCAGCTGAATTATATCCTCACTAATAGAGTCGGGAAACCACCACTGCAAGCTGAAAGTCTGGAAAAGATTAGCCCAATGGCTACTGGCGACAGCACAGTGTAAGAAGATGCTCGTGGTTTTCCAACCCGTCATTACACAAAATACACAGCTATGAGCTAAACAAAGTCTTGGATTCTTCTTTGTAGCAGATCATTAGTATTTTGTTTTGTTTGGATACACACCCTCACGAAAACTTTCACCTTCTTCGACACCTTGGCTTTTCAAATGATGTCAACTAGGATCGGGTCAAAAGGAGCATGATTGGGAGAGGACCGGAGTTAACGAGCTGACTGAAAACACCCCATTTTGGTGGAGAGCGCAAACTGTAATTGATAAAAGGGAAAGACATGTTTATGCCAATATGATTATGAAGCAAGAAGAAGGATGTTGTCAACTAAACCTTCAAAAGTTCCTTCTTTGTCCTGAAAAATTTTCGTTTTCCTTTCATTCTAAATTAACCCCAAAATAATCCTTGTTGATATTGATCCAAAGCATCTGTTTCTCCCCTTTGAATGGATGATCAAACAAGAGTGAGCCAAACTTCTAGATTGAAAGGAGGCAAGACAGACCAATTAAAGCTGATTGAACATGCACCCAAATTCTATTTATTAAAAGCTATGACTCTATATTAGAATTGCATGGAGTACTAAAATATTGTCTCGTTTACTTTTGAGCCATGTCTCCAAAAGAATGCTTATTAATTATTAATTTTTAACTAAATGTTCCAAATTATAGCCTAAAAATTGAATTTTTAGAATTTTTTCGCCCTTTCCTGTTAGTTGATGACTAGCAAAATAACTTAAATAGTTGGATACAAGTTTCAACACATTACATGCTGCCTGGTCATGGGAAATGTTAGAACTCTAGTTTTTGAAGTATCATTTAACAAATAGTTAGAAGCAAAGACCTAGAAAGGAAGTGAAACAATATTCAATAAATTTGTTTAATTTATTTTCCATCTTGATCCTTATTTATTTACTTAAAAAAAAAAATTCGCTGCTAATTGCTGCATCATTCTTGATAGTTCCTTTCCCTTCCAGGTGGGGTTGGAGTAGGGACCAAAATGCTGGCAAATGTACTCACAGAACGAGGGGTCAAGCATTTCAAATCTCTAATGTATGCTTCAACTCAAGCCTTCTACATGTTTAATAGCAATATATTTTTTTTGAATATGGTCGAAGATTTTGTAGGTATGTCATTAGAAATTAATTAGTGCGGCTTCTTTATGGTAACATATAGCTGCAATGTATTCCTTACAGTGTAGTACAGTAACCCCTTCATTATATTTAACTTGAATGTTTTATTCTTGTTCTCCCAATGAAAGTCACTTTCTAGTTGTTTATGAGTTTTTGTTCTGCAACTAACATATATCATGCCAATTGTTCAGGCCTCTCCTGGTAAAGATGGCTTAATCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCAGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGGTAAAGGAAGTGATCATCATCAATGATGCAAAACTTGTTTATAAACCATATGAATAGTTTCCCCAAGATCATTTTGGAGAATGACTGCGCAAATGTTGTGAAAATGTGAATGCAGAGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTGACAGCAGGGCTTGTTATCGAAGGTCAAACCGGAAAAGGCATTCTAGCACAGGTGAAAAGTTATAGCATCTTGGCATTTATTTTAACTTTTTTTCCCCCTTCTTTCCTTTAACAAGTTTATATTGGTTTAGAACATTTGTTGATTCCTATATATGCTTAGGAGTATTAGCTTAGAAAATTTAGATAAGTTATCAATTACCAAATTTTATAAGGTTATAAAGTAGTCACCATTTTTCACTTGAGTGAACATGGAGGTGACAGCTTCATCACATGTTGAAGGGTTGGAAAAAAGGAACCGATTTTTAAAGTTATCAACTCTAATTATCAGCAACCTCTCATGTCCTTCAGTGTTGGTCTGGAAAAGATCTTTGATGTGATTAGGTTTAATTCCTCCCGCTGTTGTTTGTTAATATGGTTTTTCTGTAATTATTAGCTTAGCAATTTTCTTTTGGATTGAACCCTTTCTGAAATTGGGTGAGAGTGCTGTTTTTTTTTTGGCTTGTTTTTGTATGCCCTTGTATATTCTTTCATCTTTCTCACTTCTAAAAGCCTGCGTTTCTTATTTAAAGAAAATGTATATAATATAGTCTTATATTTAGTTTTGAACTTTTAGAAATTAAGGGCTTGTTTGGTTATGATTGTGTTTTCTGTTTCTAGTTTTCATTCGGTAAGGCTATTTCCTGTTTCTGGTTTTTGCTACTAGCAATTTTTTTCTTTCCTAATCTAACTGAATCTTAAAGGAGAGCAGCTATATGTTTTTAAAATCTGTGCTTTCAAATAAGTTTCCATGAAAATAGTAAACAAGCTTAGTTTTGAGAGAAGCTATAAAAAATATAGTTTTTGTTTTTAAATTATATGTAAACAAGCTTTGTTTTTATAAACAACGAAAGTATAAATGAAAATTTAACATTACAGTCTATAAATATGAGATGCGATGACCAACATGTGTATAGCTTAGTAGTTCTTGTCAAATATTGTTGTATGTAAACTTACTCGCTTTTTCTTCACATATTTTCCAGTAAAAGTTTCCATAAAAACAGTAAACAATCTTTAGTTTTTATAAACAAAGAAAAACGAAAAATGAAAAATGTAACATGCCAACATGTGTATAGCTCAGTAGTCCAATATTGTTTATACTGTTTATACGCAAACTTCTTAAATGTTTTCTCTTCACTTATTTTCCAGTTGGCCGACTACTTCAGCATCATTATCAACTTCTTCATACGGTAGAGACATCTTCAAGGGGCAAAGGAGAAGTCCTTGAATGAAAAGAGTTATGCTCTTCTCGACTCTTGTAGCAAGTTTTTTTTGCTTGTTTGTTGT

mRNA sequence

ACTGGCTCTGTACAGCCAGCGATGAGAACTATTACACAAATGTCATTCTCCGGAAGATAAAGTGTCGATGTGGGCACCTGAAATCTATAAATGGATAAGTTTTCATGTAAGAACCCGCTTCACTTTGGAGATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACGGAACCTTCCGCCTTCTCAGTACCTGTCTTTCCGCCATACCCATCCTTCTGCTACTTTCTCCAGAGTCAACCCCCAGCTGAATTATATCCTCACTAATAGAGTCGGGAAACCACCACTGCAAGCTGAAAGTCTGGAAAAGATTAGCCCAATGGCTACTGGCGACAGCACAGTCAGATCATTAGTATTTTGTTTTGTTTGGATACACACCCTCACGAAAACTTTCACCTTCTTCGACACCTTGGCTTTTCAAATGATGTCAACTAGGATCGGGTGGGGTTGGAGTAGGGACCAAAATGCTGGCAAATGTACTCACAGAACGAGGGGTCAAGCATTTCAAATCTCTAATTGTAGTACAGCCTCTCCTGGTAAAGATGGCTTAATCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCAGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTGACAGCAGGGCTTGTTATCGAAGGTCAAACCGGAAAAGGCATTCTAGCACAGTTGGCCGACTACTTCAGCATCATTATCAACTTCTTCATACGGTAGAGACATCTTCAAGGGGCAAAGGAGAAGTCCTTGAATGAAAAGAGTTATGCTCTTCTCGACTCTTGTAGCAAGTTTTTTTTGCTTGTTTGTTGT

Coding sequence (CDS)

ATGTGGGCACCTGAAATCTATAAATGGATAAGTTTTCATGTAAGAACCCGCTTCACTTTGGAGATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACGGAACCTTCCGCCTTCTCAGTACCTGTCTTTCCGCCATACCCATCCTTCTGCTACTTTCTCCAGAGTCAACCCCCAGCTGAATTATATCCTCACTAATAGAGTCGGGAAACCACCACTGCAAGCTGAAAGTCTGGAAAAGATTAGCCCAATGGCTACTGGCGACAGCACAGTCAGATCATTAGTATTTTGTTTTGTTTGGATACACACCCTCACGAAAACTTTCACCTTCTTCGACACCTTGGCTTTTCAAATGATGTCAACTAGGATCGGGTGGGGTTGGAGTAGGGACCAAAATGCTGGCAAATGTACTCACAGAACGAGGGGTCAAGCATTTCAAATCTCTAATTGTAGTACAGCCTCTCCTGGTAAAGATGGCTTAATCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCAGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTGACAGCAGGGCTTGTTATCGAAGGTCAAACCGGAAAAGGCATTCTAGCACAGTTGGCCGACTACTTCAGCATCATTATCAACTTCTTCATACGGTAG

Protein sequence

MWAPEIYKWISFHVRTRFTLEMASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
Homology
[Close]
BLAST of Lsi11G007520 vs. TrEMBL
Match: A0A0A0LH95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G058660 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 6.8e-44
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 1 

Query: 126 GWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKA 185
           GWSRD  AG+ T RTRGQAF+ISN    SPG+DGLIKQVIMVDPLEAKRMAAKEMEKIKA
Sbjct: 59  GWSRD--AGRSTRRTRGQAFRISN---VSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKA 118

Query: 186 KEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           KEKFKRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQLADYFSI+INFFIR
Sbjct: 119 KEKFKRRRQIEAINGAWAMIGLTAGLVIEGRTGKGILAQLADYFSILINFFIR 166

[Close]
BLAST of Lsi11G007520 vs. TrEMBL
Match: I3T583_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 77/118 (65.25%), Postives = 94/118 (79.66%), Query Frame = 1 

Query: 121 TRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEM 180
           T + WGW R+Q+A   ++RT+ QAF++      S GKDG  K VIMVDP+EAKR+AAK+M
Sbjct: 26  TTVKWGWRREQDASMASNRTQSQAFRVLANPNVSSGKDGSKKDVIMVDPVEAKRLAAKQM 85

Query: 181 EKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           E IKAKEK K+RRQIEAINGAWAMIGLTAGLVIEGQTGK I+ QL DYF  I++FF++
Sbjct: 86  EIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFGAIVHFFVK 143

[Close]
BLAST of Lsi11G007520 vs. TrEMBL
Match: G7JEA5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129320 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.7e-34
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1 

Query: 121 TRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEM 180
           T   WGW R+Q+A   ++RT+ QAF++      S GKDG  K VIMVDP+EAKR+AAK+M
Sbjct: 26  TTAKWGWRREQDASMASNRTQSQAFRVLANPNVSSGKDGSKKDVIMVDPVEAKRLAAKQM 85

Query: 181 EKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           E IKAKEK K+RRQIEAINGAWAMIGLTAGLVIEGQTGK I+ QL DYF  I++FF++
Sbjct: 86  EIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFGAIVHFFVK 143

[Close]
BLAST of Lsi11G007520 vs. TrEMBL
Match: K7MK94_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G067900 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.4e-33
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1 

Query: 125 WGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIK 184
           WGW ++Q+A    +RTRGQAFQ+   S    GK+G    V+MVDP+EAKR+AAK+MEKIK
Sbjct: 29  WGWRKEQDASIVANRTRGQAFQVLVAS----GKEGSKDDVVMVDPVEAKRLAAKQMEKIK 88

Query: 185 AKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           AKEK KRRRQIEAINGAWAMIGLTAGLVIEGQTGK IL QL DY   I++FF+R
Sbjct: 89  AKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKSILTQLQDYLGTIVSFFVR 138

[Close]
BLAST of Lsi11G007520 vs. TrEMBL
Match: V4UKP5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009752mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 75/118 (63.56%), Postives = 92/118 (77.97%), Query Frame = 1 

Query: 120 STRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKE 179
           +T + WGW RD N    T RT+GQAFQ+      SP  +   K++IMVDPLEAKR+A K+
Sbjct: 32  ATFLKWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLEAKRLANKQ 91

Query: 180 MEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFI 238
           M++I+AKEKFKRRRQIEAINGAWAMIGLT GLVIEGQTGK I+ QLA Y+S I++FF+
Sbjct: 92  MQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQLAGYWSSIVHFFV 149

[Close]
BLAST of Lsi11G007520 vs. TAIR10
Match: AT4G28025.1 (AT4G28025.1 unknown protein)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 67/125 (53.60%), Postives = 90/125 (72.00%), Query Frame = 1 

Query: 116 FQMMSTRIGWGWSRDQNAGKCTHRTR-GQAFQISNCSTASP---GKDGLIKQVIMVDPLE 175
           F + S+ +  G  R Q+A    +R R G    ++N + + P   GK  + K+VIMVDPLE
Sbjct: 29  FAIPSSSLVKGLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLE 88

Query: 176 AKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSI 235
           AKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGILAQLA Y+S 
Sbjct: 89  AKRLASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSA 148

Query: 236 IINFF 237
           +++ F
Sbjct: 149 VVHLF 153

[Close]
BLAST of Lsi11G007520 vs. NCBI nr
Match: gi|659069787|ref|XP_008451793.1| (PREDICTED: uncharacterized protein LOC103492970 [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 126 GWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKA 185
           GWSRDQ+ G+ THRTRGQAF+ISN    SP KDGLIKQVIMVDPLEAKRMAAKEMEKIKA
Sbjct: 59  GWSRDQDVGRSTHRTRGQAFRISN---VSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKA 118

Query: 186 KEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           KEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSI+INFFIR
Sbjct: 119 KEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSILINFFIR 168

[Close]
BLAST of Lsi11G007520 vs. NCBI nr
Match: gi|778667440|ref|XP_011648927.1| (PREDICTED: uncharacterized protein LOC101212671 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 9.7e-44
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 1 

Query: 126 GWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKA 185
           GWSRD  AG+ T RTRGQAF+ISN    SPG+DGLIKQVIMVDPLEAKRMAAKEMEKIKA
Sbjct: 59  GWSRD--AGRSTRRTRGQAFRISN---VSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKA 118

Query: 186 KEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           KEKFKRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQLADYFSI+INFFIR
Sbjct: 119 KEKFKRRRQIEAINGAWAMIGLTAGLVIEGRTGKGILAQLADYFSILINFFIR 166

[Close]
BLAST of Lsi11G007520 vs. NCBI nr
Match: gi|1012002000|ref|XP_015933465.1| (PREDICTED: uncharacterized protein LOC107459729 [Arachis duranensis])

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 80/114 (70.18%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 125 WGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIK 184
           WGW R+Q+AG   +RTRGQAF+I      S GK+G  K VIMVDP+EAKR+AA++ME+IK
Sbjct: 31  WGWRREQDAGIAANRTRGQAFRILANPNVSSGKEGSNKDVIMVDPVEAKRLAARQMERIK 90

Query: 185 AKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           AKEK KRRRQIEAINGAWAMIGL AGLVIEGQTGK I  QLADY + II+FF+R
Sbjct: 91  AKEKLKRRRQIEAINGAWAMIGLAAGLVIEGQTGKSIPTQLADYLAAIIHFFVR 144

[Close]
BLAST of Lsi11G007520 vs. NCBI nr
Match: gi|1009107385|ref|XP_015879487.1| (PREDICTED: uncharacterized protein LOC107415642 [Ziziphus jujuba])

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 86/137 (62.77%), Postives = 103/137 (75.18%), Query Frame = 1 

Query: 102 HTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLI 161
           + L+   +FF T   +  ST   WGW R ++A    +RTR QAFQ+      SP K    
Sbjct: 13  YPLSTHCSFFPT--HRPSSTISKWGWRRYEDANIVVYRTRSQAFQVLANPNVSPNKGDFN 72

Query: 162 KQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI 221
           ++VIMVDPLEAKR+AAK+ME+IKAKEKFKR+RQIEAINGAWAMIGL AGLVIEG TGKGI
Sbjct: 73  RKVIMVDPLEAKRLAAKQMEQIKAKEKFKRQRQIEAINGAWAMIGLAAGLVIEGHTGKGI 132

Query: 222 LAQLADYFSIIINFFIR 239
           LAQLA Y+SII+NFF+R
Sbjct: 133 LAQLAGYWSIIVNFFVR 147

[Close]
BLAST of Lsi11G007520 vs. NCBI nr
Match: gi|1021473756|ref|XP_016200746.1| (PREDICTED: uncharacterized protein LOC107641811 [Arachis ipaensis])

HSP 1 Score: 156.4 bits (394), Expect = 6.3e-35
Identity = 79/114 (69.30%), Postives = 93/114 (81.58%), Query Frame = 1 

Query: 125 WGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIK 184
           WGW R+Q+AG   +RTRGQAF+I      S GK+G  K VIMVDP+EAKR+AA++ME+IK
Sbjct: 31  WGWRREQDAGIAANRTRGQAFRILANPNVSSGKEGSNKDVIMVDPVEAKRLAARQMERIK 90

Query: 185 AKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR 239
           AKEK KRRRQIEAINGAWAMIGL AGLVIEGQTGK I  QLADY + I++FF+R
Sbjct: 91  AKEKLKRRRQIEAINGAWAMIGLAAGLVIEGQTGKSIPTQLADYLAAIVHFFVR 144

The following BLAST results are available for this feature:
BLAST of Lsi11G007520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G007520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH95_CUCSA6.8e-4488.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G058660 PE=4 SV=1[more]
I3T583_MEDTR1.3e-3465.25Uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
G7JEA5_MEDTR3.7e-3465.25Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129320 PE=2 SV=1[more]
K7MK94_SOYBN1.4e-3368.42Uncharacterized protein OS=Glycine max GN=GLYMA_17G067900 PE=4 SV=1[more]
V4UKP5_9ROSI1.6e-3263.56Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009752mg PE=4 SV=1[more]
BLAST of Lsi11G007520 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28025.12.2e-2553.60 unknown protein[more]
BLAST of Lsi11G007520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069787|ref|XP_008451793.1|1.6e-4690.27PREDICTED: uncharacterized protein LOC103492970 [Cucumis melo][more]
gi|778667440|ref|XP_011648927.1|9.7e-4488.50PREDICTED: uncharacterized protein LOC101212671 [Cucumis sativus][more]
gi|1012002000|ref|XP_015933465.1|4.8e-3570.18PREDICTED: uncharacterized protein LOC107459729 [Arachis duranensis][more]
gi|1009107385|ref|XP_015879487.1|4.8e-3562.77PREDICTED: uncharacterized protein LOC107415642 [Ziziphus jujuba][more]
gi|1021473756|ref|XP_016200746.1|6.3e-3569.30PREDICTED: uncharacterized protein LOC107641811 [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G007520.1Lsi11G007520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding protein domainGENE3DG3DSA:1.10.3460.10coord: 182..230
score: 1.
IPR023329Chlorophyll a/b binding protein domainunknownSSF103511Chlorophyll a-b binding proteincoord: 184..230
score: 1.
NoneNo IPR availablePANTHERPTHR37752FAMILY NOT NAMEDcoord: 94..238
score: 7.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G007520Csa2G058660Cucumber (Chinese Long) v2culsiB098
Lsi11G007520CSPI02G05970Wild cucumber (PI 183967)cpilsiB096
Lsi11G007520CmaCh12G008770Cucurbita maxima (Rimu)cmalsiB154
Lsi11G007520CmoCh12G008850Cucurbita moschata (Rifu)cmolsiB143
Lsi11G007520Cla022826Watermelon (97103) v1lsiwmB117
Lsi11G007520MELO3C004033Melon (DHL92) v3.5.1lsimeB115
Lsi11G007520ClCG11G012230Watermelon (Charleston Gray)lsiwcgB083
Lsi11G007520MELO3C004033.2Melon (DHL92) v3.6.1lsimedB123
Lsi11G007520Cla97C11G218120Watermelon (97103) v2lsiwmbB078
Lsi11G007520Bhi06G001131Wax gourdlsiwgoB109
Lsi11G007520Cp4.1LG07g07300Cucurbita pepo (Zucchini)cpelsiB654
Lsi11G007520CsGy2G006090Cucumber (Gy14) v2cgyblsiB089
Lsi11G007520CsaV3_2G008330Cucumber (Chinese Long) v3cuclsiB108
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G007520Watermelon (97103) v1lsiwmB121
Lsi11G007520Silver-seed gourdcarlsiB052
Lsi11G007520Silver-seed gourdcarlsiB537
Lsi11G007520Silver-seed gourdcarlsiB723
Lsi11G007520Cucumber (Chinese Long) v3cuclsiB007
Lsi11G007520Watermelon (97103) v2lsiwmbB095
Lsi11G007520Cucumber (Gy14) v1cgylsiB100
Lsi11G007520Cucurbita maxima (Rimu)cmalsiB050
Lsi11G007520Cucurbita maxima (Rimu)cmalsiB099
Lsi11G007520Cucurbita maxima (Rimu)cmalsiB104
Lsi11G007520Cucurbita maxima (Rimu)cmalsiB709
Lsi11G007520Cucurbita moschata (Rifu)cmolsiB036
Lsi11G007520Cucurbita moschata (Rifu)cmolsiB092
Lsi11G007520Cucurbita moschata (Rifu)cmolsiB086
Lsi11G007520Cucurbita moschata (Rifu)cmolsiB703
Lsi11G007520Cucurbita pepo (Zucchini)cpelsiB070
Lsi11G007520Cucurbita pepo (Zucchini)cpelsiB283
Lsi11G007520Cucurbita pepo (Zucchini)cpelsiB530
Lsi11G007520Wild cucumber (PI 183967)cpilsiB008
Lsi11G007520Watermelon (Charleston Gray)lsiwcgB108