CmoCh12G008850 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Early light-induced, chloroplastic
Location	Cmo_Chr12 : 8081934 .. 8085325 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGATGAGAGCCACTACAAAACCGTCCCTCTCTGCAAGATAAGTGTGGATGTGGGCAACGGAAATCTGTTACTAATTCCATATAACAATGCTTTACTTCACCAATAGATAAGGGTTCTTGTGAAGAAGCGTGGTTTTTGAAGATGGCTTCCACTGCGCTGATTCTCCCCATCCATGGAGGAAACCTCTCTTTCCGCCATACCCACCCTTCTGCAACATTTTCCAGGTAATTTCAGCTTCTTCCTCGAATACCTGTTTATCTCATGCGATTCTATTAGTATAATCGGATTTTCTAAGAGATTAAGAGATGATTGACTGTTTTCTTGCGCCGATCGGCGGTGTATCTCCTTGTTTTTCTTCTTTATTAGGTTTGAATTTCTTTGTTGAATTGGGGCTTTGTGTCTAGACTTCGTATGTTGTAGATGGCTTCTGTACAACTTTACAAGCTACAGAGTGATAAATAGAAGCTTCTAGTTCCTTCCTTTGGGTTGATTAGAGTTGGAACTGCTCGTCGATGATAAGCGTCAAGATGAGGTTCTTATAAGATCCTTGCAAAATGAGGTTCTTCTAAGATCCTTGCAAAATTTCACAAACTAACTTAACTAATGATTCCAACTAAGAGCGGGTTGGAAGGATGAATAACTCTTAGATCGAACTTGGAATCTATGATGGTCACTCTTAGATTCCAAGATGATTCACTCCAGAAGTAGCTTCATCCGACTAATTCAATGAATTGATTTTACTTTGAGAAAGAAACATCAGTTTTTGTATTCCACCATGATTTCAATCTTGAATATTACATGCCTTTAAATATGCAAAAAAAAAAAAAAAAAAATCCAAATATAATGGTAATTTAGTCTTAATTGGTAGTGATATTTAAACCCACTCCATTGTTTTCTTGATTTGATACTTAAATCTTTTTTACCTTGCTTCGTGTTGCTCCTTCGAGTAATTGCTCCTTCGAGTAATTAGTGGTTAGATTCATATCAGTAGATGTCTTACAATTGGTGTGTATCACGTTCTGGATATTAGTTAAGACAATTAGATTTGGCTCGTTCTGATTTAGGTCATTATGCTGTGAGAAGTTTGGTGCGTACTTTCATGAGTTAGCGACCTGGACTAATGCTTAAGCTTCTTGAATATCTGGTATTTTCTCTCTATATATGTCTGGTTGTGAAGTTTCCTGTTTAATAACCGGGTGATGGAGCTTCACTCCTTGCCATGAAAACTTGCTCCGGCCAAAAACAAGGGTTTTGAGTTCTTAAGTAAGTTTTAGCCATAGGGATGCAAATCCAAAACCTTGGAGGGTATGTCTAAATAGGGAAAATTTTTGGTACTACGGGAATATGGATACTCATGTTTGAAACATGCTTACTTGTTATGACGTTTTCCATTCAATTTTGATCTCATTGAATTGAGTTCATATAGGATCAAATACTAGTCACCAAGAAGCATATATAAAAGAACTAAATTAGTGTTAAAAACCATTATAGCTAGCTTGGTGGTCTCCTGTTGTGGTTCTTCACGGCTCTGTCTTACTGTAACCCTTTCTTTATTCATTTACTTCGTGCTCCTCCTTTTTCTCTTTGTATATTTGTAACAGTCCAAGCCCATCGCTAGCAGATATTGTCCTATTTGGACTTTCCCTCTCAAGCTTCCCCTCAAGGTTTTTAAAATGCGTCGGTTAGGGATTCGAGCTTCCCCTCAAGGTTTTTAAAATGCGTCTGATAGAGAGAGGTTTCCACGCACTCATAAGAAATGCTTCGTTCTCCTCTCCCACCGACGTGGGGATCTCAAAATTCACCCCAGTGTCCTCATTGACACACTACTAGGTGTCTAGCTCTGATACCATTTGTAACAGCCCAAACCCATCGATAGCAGATGTTGTCTTTTTTGGGCTTTCCCTTCAGAGGTTTCCACACCCATATAAGGAATGTTTTGTTCTCCTCCTAATCAACATGGGATCTCACAATATTCTTTCGGTAAAAGGATCCCTTTTGTTCTCTAGCTGGTGGTTATAAATATAAAGCATATTGATGAAGGCTCTCCAGAATTTCGAGCTGAACTCACACAAGTCCTACACTATTCTTGGTGAAAAAGATGAGGGACTTTCCTTAAATTTTTTCTTATAGCTAAGACCTATATAGGCAATGAAATGAGTTCTAAACTACTGTCTCATTTACTTTTGAGCCACGTCTCCAAAAATATGCCTATTAATATTTACTAGATGTTCCAAATTATAGCCTTAAAGCTGAATTTATATATTTTTTGCTCTTCTCTGTTAGTTGATGACTAGCAGAAGAACTTAAACAGTTGGATACAATTTTCGACACATTACATGGTGCATGTTATTGTAGTAATAGTTTCAGTCATTGGAAATGTTAGCACTCTACTCTTTGAAATATTATTTGACAAATAGTTAGAATCCAAGACCTAGAAAGGAAATGAAACAGAATTCAACAAATTTTCCCCCTCTTGATCCTTTACCTTGGGTGTATTCTTTTTAATCACGAAACAGTATTTTTTTCTCTGCTAATTGATACATCATTCTTGATAGTTTCTTTTCCTTCCAGGTGGGGTTGGAATAGGGATCAAGACGTCGGAAAGAGTACACACAGAACGAGGGGTCAAGCATTCCGAATTTTGGCTAACCCTAATGTACGCTTCAACTCAAGGCTTCTGCATGTTTAATGGCAATATATTTGGTTTGAATATGGTCAAAGATTTTGTAGGTATGTCATTAGAAATTAATTAGTGGATGCATATATTCAGAGAATTCACACCTGCCCCCCATTCGGATTTGAATAGAACCAATCTTTCAGCATCTCTTTATGATTGAAATGAATTTGATTGAGTTGTCTGTCTGATTCATCATAATTATCTTGATTGGTTTTGATTTTGTTCTCTCAATGAAAACCATATTCTAAGTTGTTTATGGGCTTTTGTTCTGCGACAAACATATATCATGTCAATTGTTTAGGTCTCTCCCGGGAAAGATGACTTAATTAAGAAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGTTTGGCTGCAAAAGAAATGGAAAAAATCAAAGCAAAAGAGAAGTTCAAGGTATGGGAAGCAATCATCAGTGATGCAAAACTTGTTTAATAAACCATATGGATATGCAGATAATGTTGTGAAATGTGATTGCAGAGACGACGTCAAATAGAAGCGATAAATGGAGCGTGGGCAATGATTGGTTTGACGGCAGGGCTCATCGTTGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGGTGAGAAGTTATAGCGTTTTACGTTCTTTTGTATTCGTGCCATTTCTTTAACATTCTTTTGAACAAATTGATTGGTTTAGAACATTTGTTTATTCCTATATGCCAAGGAGTGA

mRNA sequence

GCGATGAGAGCCACTACAAAACCGTCCCTCTCTGCAAGATAAGTGTGGATGTGGGCAACGGAAATCTGTTACTAATTCCATATAACAATGCTTTACTTCACCAATAGATAAGGGTTCTTGTGAAGAAGCGTGGTTTTTGAAGATGGCTTCCACTGCGCTGATTCTCCCCATCCATGGAGGAAACCTCTCTTTCCGCCATACCCACCCTTCTGCAACATTTTCCAGGTGGGGTTGGAATAGGGATCAAGACGTCGGAAAGAGTACACACAGAACGAGGGGTCAAGCATTCCGAATTTTGGCTAACCCTAATGTCTCTCCCGGGAAAGATGACTTAATTAAGAAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGTTTGGCTGCAAAAGAAATGGAAAAAATCAAAGCAAAAGAGAAGTTCAAGAGACGACGTCAAATAGAAGCGATAAATGGAGCGTGGGCAATGATTGGTTTGACGGCAGGGCTCATCGTTGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGGAGTGA

Coding sequence (CDS)

ATGGCTTCCACTGCGCTGATTCTCCCCATCCATGGAGGAAACCTCTCTTTCCGCCATACCCACCCTTCTGCAACATTTTCCAGGTGGGGTTGGAATAGGGATCAAGACGTCGGAAAGAGTACACACAGAACGAGGGGTCAAGCATTCCGAATTTTGGCTAACCCTAATGTCTCTCCCGGGAAAGATGACTTAATTAAGAAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGTTTGGCTGCAAAAGAAATGGAAAAAATCAAAGCAAAAGAGAAGTTCAAGAGACGACGTCAAATAGAAGCGATAAATGGAGCGTGGGCAATGATTGGTTTGACGGCAGGGCTCATCGTTGAAGGTCAAACTGGAAAAGGCATTCTAGCACAGGAGTGA

Homology

[Close]

BLAST of CmoCh12G008850 vs. TrEMBL
Match: A0A0A0LH95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G058660 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.1e-47
Identity = 107/133 (80.45%), Postives = 116/133 (87.22%), Query Frame = 1


Query: 2   ASTALILPIHGGNL------SFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILANP 61
           ASTALILPI+GGNL      SFRHT PSATFSR GW+RD   G+ST RTRGQAFRI    
Sbjct: 25  ASTALILPINGGNLPPSQYLSFRHTLPSATFSRLGWSRD--AGRSTRRTRGQAFRI---S 84

Query: 62  NVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 121
           NVSPG+D LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL
Sbjct: 85  NVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 144

Query: 122 IVEGQTGKGILAQ 129
           ++EG+TGKGILAQ
Sbjct: 145 VIEGRTGKGILAQ 152

[Close]

BLAST of CmoCh12G008850 vs. TrEMBL
Match: G7JEA5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129320 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-37
Identity = 84/128 (65.62%), Postives = 102/128 (79.69%), Query Frame = 1


Query: 3   STALILPIHGGNL-SFRHTHPS-ATFSRWGWNRDQDVGKSTHRTRGQAFRILANPNVSPG 62
           +++ ILP+      SF HTH S  T ++WGW R+QD   +++RT+ QAFR+LANPNVS G
Sbjct: 2   ASSTILPLSNAQFPSFHHTHHSFPTTAKWGWRREQDASMASNRTQSQAFRVLANPNVSSG 61

Query: 63  KDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLIVEGQ 122
           KD   K VIMVDP+EAKRLAAK+ME IKAKEK K+RRQIEAINGAWAMIGLTAGL++EGQ
Sbjct: 62  KDGSKKDVIMVDPVEAKRLAAKQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQ 121

Query: 123 TGKGILAQ 129
           TGK I+ Q
Sbjct: 122 TGKNIITQ 129

[Close]

BLAST of CmoCh12G008850 vs. TrEMBL
Match: I3T583_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 84/128 (65.62%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 3   STALILPIHGGNL-SFRHTHPS-ATFSRWGWNRDQDVGKSTHRTRGQAFRILANPNVSPG 62
           +++ ILP+      SF HTH S  T  +WGW R+QD   +++RT+ QAFR+LANPNVS G
Sbjct: 2   ASSTILPLSNAQFPSFHHTHHSFPTTVKWGWRREQDASMASNRTQSQAFRVLANPNVSSG 61

Query: 63  KDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLIVEGQ 122
           KD   K VIMVDP+EAKRLAAK+ME IKAKEK K+RRQIEAINGAWAMIGLTAGL++EGQ
Sbjct: 62  KDGSKKDVIMVDPVEAKRLAAKQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQ 121

Query: 123 TGKGILAQ 129
           TGK I+ Q
Sbjct: 122 TGKNIITQ 129

[Close]

BLAST of CmoCh12G008850 vs. TrEMBL
Match: M5XM59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012924mg PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   MASTALILPIHGGNL------SFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 60
           M+ST+L LPI+GG+L      SF + HPSAT  +WGW R Q      +R  G A +ILAN
Sbjct: 1   MSSTSL-LPINGGHLLFTQGSSFPNYHPSATLYKWGWKRQQGGNVVAYRANGHALQILAN 60

Query: 61  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120
           PNVS  K D   +VIMVDPLEAKRLAAK+ME+IKAKEK+KR+RQIEAINGAWAMIGLTAG
Sbjct: 61  PNVSSRKRDSSNEVIMVDPLEAKRLAAKQMEEIKAKEKYKRKRQIEAINGAWAMIGLTAG 120

Query: 121 LIVEGQTGKGILAQ 129
           L++E QTGKGIL Q
Sbjct: 121 LVIEAQTGKGILDQ 133

[Close]

BLAST of CmoCh12G008850 vs. TrEMBL
Match: V4UVK7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009752mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-36
Identity = 78/113 (69.03%), Postives = 94/113 (83.19%), Query Frame = 1


Query: 16  SFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILANPNVSPGKDDLIKKVIMVDPLE 75
           S R+   SATF +WGW RD +V   T RT+GQAF++LANPN+SP  +D  KK+IMVDPLE
Sbjct: 24  SLRYPCSSATFLKWGWRRDLNVSLVTRRTKGQAFQVLANPNISPRTNDSSKKIIMVDPLE 83

Query: 76  AKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLIVEGQTGKGILAQ 129
           AKRLA K+M++I+AKEKFKRRRQIEAINGAWAMIGLT GL++EGQTGK I+ Q
Sbjct: 84  AKRLANKQMQEIQAKEKFKRRRQIEAINGAWAMIGLTVGLVIEGQTGKNIIEQ 136

[Close]

BLAST of CmoCh12G008850 vs. TAIR10
Match: AT4G28025.1 (AT4G28025.1 unknown protein)

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 18  RHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILANPNVSP----GKDDLIKKVIMVDP 77
           R   PS++  + G  R QD     +R R    R+LANPNVSP    GK  + K+VIMVDP
Sbjct: 28  RFAIPSSSLVK-GLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDP 87

Query: 78  LEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLIVEGQTGKGILAQ 129
           LEAKRLA+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GL++E QTGKGILAQ
Sbjct: 88  LEAKRLASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQ 141

[Close]

BLAST of CmoCh12G008850 vs. NCBI nr
Match: gi|659069787|ref|XP_008451793.1| (PREDICTED: uncharacterized protein LOC103492970 [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 5.8e-51
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 1


Query: 2   ASTALILPIHGGNL------SFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILANP 61
           AS +LILPI+GGNL      SFRH+HPSATFSR GW+RDQDVG+STHRTRGQAFRI    
Sbjct: 25  ASASLILPINGGNLPPSQYLSFRHSHPSATFSRLGWSRDQDVGRSTHRTRGQAFRI---S 84

Query: 62  NVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 121
           NVSP KD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL
Sbjct: 85  NVSPAKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 144

Query: 122 IVEGQTGKGILAQ 129
           ++EGQTGKGILAQ
Sbjct: 145 VIEGQTGKGILAQ 154

[Close]

BLAST of CmoCh12G008850 vs. NCBI nr
Match: gi|778667440|ref|XP_011648927.1| (PREDICTED: uncharacterized protein LOC101212671 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 8.7e-47
Identity = 107/133 (80.45%), Postives = 116/133 (87.22%), Query Frame = 1


Query: 2   ASTALILPIHGGNL------SFRHTHPSATFSRWGWNRDQDVGKSTHRTRGQAFRILANP 61
           ASTALILPI+GGNL      SFRHT PSATFSR GW+RD   G+ST RTRGQAFRI    
Sbjct: 25  ASTALILPINGGNLPPSQYLSFRHTLPSATFSRLGWSRD--AGRSTRRTRGQAFRI---S 84

Query: 62  NVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 121
           NVSPG+D LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL
Sbjct: 85  NVSPGRDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL 144

Query: 122 IVEGQTGKGILAQ 129
           ++EG+TGKGILAQ
Sbjct: 145 VIEGRTGKGILAQ 152

[Close]

BLAST of CmoCh12G008850 vs. NCBI nr
Match: gi|1009107385|ref|XP_015879487.1| (PREDICTED: uncharacterized protein LOC107415642 [Ziziphus jujuba])

HSP 1 Score: 174.9 bits (442), Expect = 9.3e-41
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 1


Query: 1   MASTALILPIHGG-----NLSFRHTH-PSATFSRWGWNRDQDVGKSTHRTRGQAFRILAN 60
           MAST+L LPI+GG     + SF  TH PS+T S+WGW R +D     +RTR QAF++LAN
Sbjct: 1   MASTSL-LPINGGYPLSTHCSFFPTHRPSSTISKWGWRRYEDANIVVYRTRSQAFQVLAN 60

Query: 61  PNVSPGKDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAG 120
           PNVSP K D  +KVIMVDPLEAKRLAAK+ME+IKAKEKFKR+RQIEAINGAWAMIGL AG
Sbjct: 61  PNVSPNKGDFNRKVIMVDPLEAKRLAAKQMEQIKAKEKFKRQRQIEAINGAWAMIGLAAG 120

Query: 121 LIVEGQTGKGILAQ 129
           L++EG TGKGILAQ
Sbjct: 121 LVIEGHTGKGILAQ 133

[Close]

BLAST of CmoCh12G008850 vs. NCBI nr
Match: gi|357479873|ref|XP_003610222.1| (hypothetical protein MTR_4g129320 [Medicago truncatula])

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-37
Identity = 84/128 (65.62%), Postives = 102/128 (79.69%), Query Frame = 1


Query: 3   STALILPIHGGNL-SFRHTHPS-ATFSRWGWNRDQDVGKSTHRTRGQAFRILANPNVSPG 62
           +++ ILP+      SF HTH S  T ++WGW R+QD   +++RT+ QAFR+LANPNVS G
Sbjct: 2   ASSTILPLSNAQFPSFHHTHHSFPTTAKWGWRREQDASMASNRTQSQAFRVLANPNVSSG 61

Query: 63  KDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLIVEGQ 122
           KD   K VIMVDP+EAKRLAAK+ME IKAKEK K+RRQIEAINGAWAMIGLTAGL++EGQ
Sbjct: 62  KDGSKKDVIMVDPVEAKRLAAKQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQ 121

Query: 123 TGKGILAQ 129
           TGK I+ Q
Sbjct: 122 TGKNIITQ 129

[Close]

BLAST of CmoCh12G008850 vs. NCBI nr
Match: gi|388519227|gb|AFK47675.1| (unknown [Medicago truncatula])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 84/128 (65.62%), Postives = 101/128 (78.91%), Query Frame = 1


Query: 3   STALILPIHGGNL-SFRHTHPS-ATFSRWGWNRDQDVGKSTHRTRGQAFRILANPNVSPG 62
           +++ ILP+      SF HTH S  T  +WGW R+QD   +++RT+ QAFR+LANPNVS G
Sbjct: 2   ASSTILPLSNAQFPSFHHTHHSFPTTVKWGWRREQDASMASNRTQSQAFRVLANPNVSSG 61

Query: 63  KDDLIKKVIMVDPLEAKRLAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLIVEGQ 122
           KD   K VIMVDP+EAKRLAAK+ME IKAKEK K+RRQIEAINGAWAMIGLTAGL++EGQ
Sbjct: 62  KDGSKKDVIMVDPVEAKRLAAKQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQ 121

Query: 123 TGKGILAQ 129
           TGK I+ Q
Sbjct: 122 TGKNIITQ 129

The following BLAST results are available for this feature:

BLAST of CmoCh12G008850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G008850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH95_CUCSA	6.1e-47	80.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G058660 PE=4 SV=1	[more]
G7JEA5_MEDTR	1.1e-37	65.63	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g129320 PE=2 SV=1	[more]
I3T583_MEDTR	2.5e-37	65.63	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
M5XM59_PRUPE	3.3e-37	65.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012924mg PE=4 SV=1	[more]
V4UVK7_9ROSI	2.2e-36	69.03	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009752mg PE=4 SV=1	[more]

BLAST of CmoCh12G008850 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28025.1	2.8e-27	59.13	unknown protein	[more]

BLAST of CmoCh12G008850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069787\|ref\|XP_008451793.1\|	5.8e-51	82.71	PREDICTED: uncharacterized protein LOC103492970 [Cucumis melo]	[more]
gi\|778667440\|ref\|XP_011648927.1\|	8.7e-47	80.45	PREDICTED: uncharacterized protein LOC101212671 [Cucumis sativus]	[more]
gi\|1009107385\|ref\|XP_015879487.1\|	9.3e-41	70.15	PREDICTED: uncharacterized protein LOC107415642 [Ziziphus jujuba]	[more]
gi\|357479873\|ref\|XP_003610222.1\|	1.6e-37	65.63	hypothetical protein MTR_4g129320 [Medicago truncatula]	[more]
gi\|388519227\|gb\|AFK47675.1\|	3.7e-37	65.63	unknown [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008850.1	CmoCh12G008850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	G3DSA:1.10.3460.10		coord: 89..127 score: 5.
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 89..128 score: 1.5
None	No IPR available	PANTHER	PTHR37752	FAMILY NOT NAMED	coord: 1..128 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008850	CmaCh12G008770	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008850	Cla022826	Watermelon (97103) v1	cmowmB163
CmoCh12G008850	Csa2G058660	Cucumber (Chinese Long) v2	cmocuB150
CmoCh12G008850	MELO3C004033	Melon (DHL92) v3.5.1	cmomeB164
CmoCh12G008850	ClCG11G012230	Watermelon (Charleston Gray)	cmowcgB135
CmoCh12G008850	CSPI02G05970	Wild cucumber (PI 183967)	cmocpiB151
CmoCh12G008850	Lsi11G007520	Bottle gourd (USVL1VR-Ls)	cmolsiB143
CmoCh12G008850	Cp4.1LG07g07300	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008850	MELO3C004033.2	Melon (DHL92) v3.6.1	cmomedB181
CmoCh12G008850	CsaV3_2G008330	Cucumber (Chinese Long) v3	cmocucB0177
CmoCh12G008850	Cla97C11G218120	Watermelon (97103) v2	cmowmbB157
CmoCh12G008850	Bhi06G001131	Wax gourd	cmowgoB0181
CmoCh12G008850	CsGy2G006090	Cucumber (Gy14) v2	cgybcmoB161

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008850	Cucurbita pepo (Zucchini)	cmocpeB149
CmoCh12G008850	Cucurbita pepo (Zucchini)	cmocpeB168
CmoCh12G008850	Silver-seed gourd	carcmoB0079
CmoCh12G008850	Cucurbita moschata (Rifu)	cmocmoB149
CmoCh12G008850	Cucumber (Gy14) v1	cgycmoB0176
CmoCh12G008850	Cucurbita maxima (Rimu)	cmacmoB764