Lsi11G006530 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G006530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Trafficking protein particle complex subunit-like protein
Location	chr11 : 6868980 .. 6872668 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCGTACTAGTAAAGAAGAGAAAGTATTTACTTAAAGCTACTAGAGCAATTGCTAGTGTTTTGTTTTCCAGATTTGGGAAGGCACGGGGAAGGAGGTACCCCAGGTCCTAGGGTTGGGCAGTGGACTTGCTTCCTGTTATTCTATTAAAAGCTTCTGCAGCTAACAGTTGAGTAGCGGTTACTGGGACAGAAGGCGGCTAAAACTTTCGAGTCATACTCCAGATCCCTTTCAAATTACTAGACATGCGGTCATGGATCAAATTGGGTTCAGCAAGAAATTAGGTAAGATGGAATGGACGACTTTCTTAACCACATCCTTCTCAATTCAGGAGAGAAGAACATAAGAAATTTGCTTCTTTCTCAGAGTTAGAAGGATGCCCCTCTTGATTCCAAAAGAAATGGAAGCAGGAGAAGTATGGAGGAAAAATGGCAGAGTCAAGAGAAAGAAACAAGAGTGGAGCTGGAAGAATATGGAAGGTAGGTAGGAAGAAGAATGGGTCTGTAGTGATTTTGACTTGAATGTTTTTAGCCCAGGGCATATGTAATCAATCAGTCAGGTTGTACCACTTTTCATAATTTCATGACAATGAGGTATTACGATTTTAGAAATTTCAAGAGATTGGTTATGACTTTAAATGAATATTCTTTATGTCTTGAATCTCAACAATAACATGTTAATTAGGTTCATATTATAAATAACTCCTTTTCTATCAATTCTTTTGTGGTACTCAAGTGACCGAGGATCACACAATCTTGCAAGTGTTTTTCTACCAAGAAATCTTACGCCAAATATTTGATATCATTCCATTTGTTCAAGACTTATATGAGGAAACTGTCAAATTTCGAGATTTTGTTTCAAAGATCAGTGTGCACAATGAAAACAAAAAGGTACTAACGGTGACTTTTTCTTTTTAACAAGTGGGTAAGAGGGTTTGATTTTAGTTTTATATATGTTAATCTGGTTTCTAAGAATTGCTTGAATCTCTCAAATGATTAGTATTTTGGGAATTTTTAAAAATAGAAAAATAAGAAAAATTATTTACACAAAATAGTAAAGTTTTTAAATAGTTGTGATCGGATCTATCATTAATAAGATTTTGTTTTTGCTATTTTATGTAAATAGTTCAACGTTTTTTTTCAAAATTTTTTAGTATTTTTTCCCCTAATTTTTACTCATCTCTAGTTCTCAAAACCTAATATTAATCTATAAAACATGTGAAATGACACAACAATTAATGGGTTTTAACTAATAAACATAAGGAAAAAAAAACTCTTACGTTTGTTTTTAAATGAAACTCTTACCATTACAAGGATGGATTTTTAAGTAGCCTAAATAATATAAATGAAATTGAAACTCTCATATATTTTAACTTTTTTTAATTGAAACTAATCTCAAATGAGAGGACAATTTTAATACTAATAAGAGTTAAAATTATATATTTAATCTCTAAATTTTGTTTGTATTTTTTTTCAAAAAAAGTCACAAATATATTAGACAAAAATTAAAACTTAAAATTTCATTAGTTATAAAATTCAATTTTATAATCGGTTATTAATTTTAAATTTTTAAAAATAAAAACAATAAGTGAAATTATTTACACAGCAAAATTTTGATAAATCGGCCATAAAACTCTCCGTAATTACATCTATCCGCCATTGCCGACTCGCTCCAGTCTCAAGCTCCTGAAACCCAAACTCCCCCACTGGCTTAAGATCGGCGTTCACTGAAACCATTTCCTTCATAATACCTTAGAATTTTGATAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGTAATCAACCAAGACAAACTACTTGTTTATGCAATTGGAAACACAAATTTATGTTAATTCCCTCCTGGATTGAGAATTTTGATGCTTTATTTCTTTTCTGGGAACCCCAATTCAAGATTTCAGTTTTTGATCTCATACAGCAAAGATATATAAATCGGGTTTGAGTGGAATTATTTTATTTATTCTTCATTGGGTATTCTATGTGGTTTGAATCTCTTAGTGGGTTTGTTTGAAAATTTAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCCGGTTGTTCGGGTGTTGAACTTCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTTTCTTCCAGTCCTTTGTTTACTTTTTTGCTTCAAATCCATGGGTTTTGTCTCAAACACTGTGATCCAAAGATAAGCAATTAAGTTCCAAGATGGGAAAACACAACTGAAGTTCTAGAAACGTTATTGATCTTTCCTTTTTCTTCTTGTTTCGAGTTCAAAATATATGATATTGGGGATTCAAACATAAATTTTGGTTGAGATTATTATGTCTTGATTAGTTGAGTCATGCTTAGATGGTTGGAGATGATATTGATCTTCTATTAGAAAAATGTAGCTATTAGAGTGTTAATACAATATTAAATTTATCTTCACCCATCAGTTTAAGCTTTTATGTCAATCGGTGATTTAACATAGTATTAGAGTAGGAAGACCTGTGTTCAAACCCTTGCAATGTTATTTTCTCTCAAATTAATATCGATTTCAAGCTCACAAGTGAGGGGAAGTATTAGAGTGTTTATATAATATTAAATTTACTTTTATCCACCGGCTTAAACTTTTAGGTCAATCGGTGATTTAACAGTAGTTTTTTTATAATCACACTACAGTCTTCTTCACAAATATGATTGTGCTGCCAAACTTTTGGGGGAAAAAACTAGCAAGTGGTGCAACAGAAACTGCAAAATCGGTTTTTCAAAATTTGACTCTGTAACTGTTTGTGTCTAATCTTTTGTCATTAAACTTTGTTGCCTGCAGAGAGGGAGGAGAGTTAAAGATTGTTACGATATGCATATGAATGGATTTTGATCTGGAGGATTAATCATATCTCCATTATCAACCTACATAGCAATAGAAATGCTTGTTTCGTAGTATAGTTTTGTATTTCCTTGTTCAACAATTGGTGATCTTTGCAAGGTCTCACGACAGTAACTTTCATGTTATAGTCATATGCTAGTTCTTAATAAAGAAGCTGAATCATGGATGGAAATCGTCTGTTGCAGGGACAAAGTTTTTTGTTGTGTGTGAGCCCGGGACACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTAGTGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGACATCCTTCATTTTGTCAGTATTGACCATCCACAATTCAAGAAAGAAAGGCTCGTGATATTATTGTGCAAAGTACTTGATAATTTACCTTCCTTAATGCTAAATGTATTCCATTCCTAGTGAATCGTGTGAGATTTGGTGGAAATAGAATGTTTCTTTTTAGTGTTGTTCGCCAGAAACTCAAGGTTAATTTTATACCCAAATTTTTGTCAATTGTATACAGATCTTGATCCAGTTAAATGACAGAGCAACGTCATGTTATAAACTTTTGGGGCCATGGTTAACTTAA

mRNA sequence

ATGCCCGTACTAGTAAAGAAGAGAAAGTATTTACTTAAAGCTACTAGAGCAATTGCTAGTGTTTTGTTTTCCAGATTTGGGAAGGCACGGGGAAGGAGAAGGCGGCTAAAACTTTCGAGTCATACTCCAGATCCCTTTCAAATTACTAGACATGCGGTCATGGATCAAATTGGGTTCAGCAAGAAATTAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCCGGTTGTTCGGGTGTTGAACTTCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCCGGGACACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTAGTGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGACATCCTTCATTTTGTCAGTATTGACCATCCACAATTCAAGAAAGAAAGGCTCGTGATATTATTGTGCAAAGTACTTGATAATTTACCTTCCTTAATGCTAAATGTATTCCATTCCTAGTGAATCGTGTGAGATTTGGTGGAAATAGAATGTTTCTTTTTAGTGTTGTTCGCCAGAAACTCAAGGTTAATTTTATACCCAAATTTTTGTCAATTGTATACAGATCTTGATCCAGTTAAATGACAGAGCAACGTCATGTTATAAACTTTTGGGGCCATGGTTAACTTAA

Coding sequence (CDS)

ATGCCCGTACTAGTAAAGAAGAGAAAGTATTTACTTAAAGCTACTAGAGCAATTGCTAGTGTTTTGTTTTCCAGATTTGGGAAGGCACGGGGAAGGAGAAGGCGGCTAAAACTTTCGAGTCATACTCCAGATCCCTTTCAAATTACTAGACATGCGGTCATGGATCAAATTGGGTTCAGCAAGAAATTAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAATGATAGTTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCCGGTTGTTCGGGTGTTGAACTTCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGGACAAAGTTTTTTGTTGTGTGTGAGCCCGGGACACAGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTAGTGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGA

Protein sequence

MPVLVKKRKYLLKATRAIASVLFSRFGKARGRRRRLKLSSHTPDPFQITRHAVMDQIGFSKKLDLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR

Homology

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BLAST of Lsi11G006530 vs. Swiss-Prot
Match: TPPC4_DICDI (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-34
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 1


Query: 71  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCS-GVELL 130
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP++G S G+E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 131 EADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCEL 190
           E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTD+VLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 191 FDINL 195
           FD  L
Sbjct: 123 FDYKL 127

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BLAST of Lsi11G006530 vs. Swiss-Prot
Match: TPPC4_BOVIN (Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.2e-31
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 94  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 153
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 154 GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ 200
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Lsi11G006530 vs. Swiss-Prot
Match: TPPC4_MOUSE (Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.2e-31
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 94  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 153
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 154 GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ 200
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Lsi11G006530 vs. Swiss-Prot
Match: TPPC4_RAT (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.2e-31
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 94  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 153
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 154 GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ 200
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of Lsi11G006530 vs. Swiss-Prot
Match: TPPC4_HUMAN (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 60/106 (56.60%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 94  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 153
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 154 GTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLVQAVQ 200
               ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

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BLAST of Lsi11G006530 vs. TrEMBL
Match: A0A0A0LJ20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034720 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. TrEMBL
Match: A5C3J4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00710 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSP  GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPTLGCSGIE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLSQAVQKDRVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. TrEMBL
Match: M5W1B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012108mg PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 132/147 (89.80%), Postives = 141/147 (95.92%), Query Frame = 1


Query: 62  KLDLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIA 121
           ++ L  MAAIYSLYIINKSGGLIFYKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSPI+
Sbjct: 37  EIPLLEMAAIYSLYIINKSGGLIFYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPIS 96

Query: 122 GCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEM 181
           GC G+ELL+ADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK+IYELYTD+VLKNPFYEM
Sbjct: 97  GCFGIELLQADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKHIYELYTDYVLKNPFYEM 156

Query: 182 EMPIRCELFDINLVQAVQKDRVALLGR 209
           EMPIRCELFDINL QA+QKDRVALL R
Sbjct: 157 EMPIRCELFDINLTQAIQKDRVALLAR 183

[Close]

BLAST of Lsi11G006530 vs. TrEMBL
Match: A0A067E7I4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032406mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.8e-72
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP  GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQKDRVA+LGR
Sbjct: 121 ELFDINLSQAVQKDRVAMLGR 141

[Close]

BLAST of Lsi11G006530 vs. TrEMBL
Match: A0A0D2RXT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G172500 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.5e-71
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGS GRMDTNDSLRVASLWHSMHAISQQLSP  GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSKGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLK +YELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEALLKVVYELYTDYVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLTQAVQKDRVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. TAIR10
Match: AT5G02280.1 (AT5G02280.1 SNARE-like superfamily protein)

HSP 1 Score: 267.7 bits (683), Expect = 6.0e-72
Identity = 127/141 (90.07%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP+ GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYELYTD+VLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQ DRVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. TAIR10
Match: AT1G51160.1 (AT1G51160.1 SNARE-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10
Identity = 41/143 (28.67%), Postives = 67/143 (46.85%), Query Frame = 1


Query: 72  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI---AGCSGV 131
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+    G  GV
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 132 ELLEADTFDLHCFQSLT----------GTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKN 191
             L       H F++ T          G K  +V  P T  +   LKYIY LY ++V+KN
Sbjct: 84  PQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVKN 143

Query: 192 PFYEMEMPIRCELFDINLVQAVQ 200
           P Y    PI+ ELF+  L Q V+
Sbjct: 144 PIYSPGSPIKSELFNTALDQYVR 166

[Close]

BLAST of Lsi11G006530 vs. NCBI nr
Match: gi|449453994|ref|XP_004144741.1| (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.6e-74
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. NCBI nr
Match: gi|659070068|ref|XP_008453237.1| (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 4.6e-74
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. NCBI nr
Match: gi|225450514|ref|XP_002281149.1| (PREDICTED: trafficking protein particle complex subunit 4 [Vitis vinifera])

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSP  GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPTLGCSGIE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLSQAVQKDRVALLGR 141

[Close]

BLAST of Lsi11G006530 vs. NCBI nr
Match: gi|595829988|ref|XP_007205977.1| (hypothetical protein PRUPE_ppa012108mg [Prunus persica])

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 132/147 (89.80%), Postives = 141/147 (95.92%), Query Frame = 1


Query: 62  KLDLKTMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIA 121
           ++ L  MAAIYSLYIINKSGGLIFYKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSPI+
Sbjct: 37  EIPLLEMAAIYSLYIINKSGGLIFYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPIS 96

Query: 122 GCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEM 181
           GC G+ELL+ADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLK+IYELYTD+VLKNPFYEM
Sbjct: 97  GCFGIELLQADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKHIYELYTDYVLKNPFYEM 156

Query: 182 EMPIRCELFDINLVQAVQKDRVALLGR 209
           EMPIRCELFDINL QA+QKDRVALL R
Sbjct: 157 EMPIRCELFDINLTQAIQKDRVALLAR 183

[Close]

BLAST of Lsi11G006530 vs. NCBI nr
Match: gi|1009177989|ref|XP_015870278.1| (PREDICTED: trafficking protein particle complex subunit 4 [Ziziphus jujuba])

HSP 1 Score: 279.3 bits (713), Expect = 5.6e-72
Identity = 132/141 (93.62%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 68  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 127
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRMASLWHSMHAISQQLSPISGCSGIE 60

Query: 128 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 187
           LL+ADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLK+IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKHIYELYTDYVLKNPFYEMEMPIRC 120

Query: 188 ELFDINLVQAVQKDRVALLGR 209
           ELFDINL QA+QKDRVALLGR
Sbjct: 121 ELFDINLSQAIQKDRVALLGR 141

The following BLAST results are available for this feature:

BLAST of Lsi11G006530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPPC4_DICDI	6.1e-34	52.00	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=tr...	[more]
TPPC4_BOVIN	8.2e-31	57.55	Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=...	[more]
TPPC4_MOUSE	8.2e-31	57.55	Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 S...	[more]
TPPC4_RAT	8.2e-31	57.55	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 P...	[more]
TPPC4_HUMAN	1.8e-30	56.60	Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 S...	[more]

BLAST of Lsi11G006530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ20_CUCSA	1.1e-74	98.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034720 PE=4 SV=1	[more]
A5C3J4_VITVI	3.0e-72	95.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00710 PE=4 SV=...	[more]
M5W1B8_PRUPE	3.0e-72	89.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012108mg PE=4 SV=1	[more]
A0A067E7I4_CITSI	8.8e-72	94.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032406mg PE=4 SV=1	[more]
A0A0D2RXT8_GOSRA	1.5e-71	93.62	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G172500 PE=4 SV=1	[more]

BLAST of Lsi11G006530 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02280.1	6.0e-72	90.07	SNARE-like superfamily protein	[more]
AT1G51160.1	1.0e-10	28.67	SNARE-like superfamily protein	[more]

BLAST of Lsi11G006530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453994\|ref\|XP_004144741.1\|	1.6e-74	98.58	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis sativus]	[more]
gi\|659070068\|ref\|XP_008453237.1\|	4.6e-74	97.87	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo]	[more]
gi\|225450514\|ref\|XP_002281149.1\|	4.3e-72	95.04	PREDICTED: trafficking protein particle complex subunit 4 [Vitis vinifera]	[more]
gi\|595829988\|ref\|XP_007205977.1\|	4.3e-72	89.80	hypothetical protein PRUPE_ppa012108mg [Prunus persica]	[more]
gi\|1009177989\|ref\|XP_015870278.1\|	5.6e-72	93.62	PREDICTED: trafficking protein particle complex subunit 4 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0030008	TRAPP complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011012	Longin-like_dom_sf
IPR007233	TRAPPC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0043547	positive regulation of GTPase activity
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0006810	transport
biological_process	GO:0065009	regulation of molecular function
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030008	TRAPP complex
molecular_function	GO:0017112	Rab guanyl-nucleotide exchange factor activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G006530.1	Lsi11G006530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	SYNBINDIN	coord: 46..208 score: 1.4
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 71..200 score: 5.5
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 71..201 score: 9.5
IPR011012	Longin-like domain	unknown	SSF64356	SNARE-like	coord: 68..200 score: 2.38
None	No IPR available	GENE3D	G3DSA:3.30.450.70		coord: 68..200 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G006530	Csa2G034720	Cucumber (Chinese Long) v2	culsiB098
Lsi11G006530	CSPI02G04890	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G006530	Cucsa.090460	Cucumber (Gy14) v1	cgylsiB100
Lsi11G006530	CmaCh05G010640	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G006530	CmoCh05G010730	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G006530	Cla019986	Watermelon (97103) v1	lsiwmB107
Lsi11G006530	MELO3C004163	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G006530	ClCG02G014740	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G006530	MELO3C004163.2	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G006530	Cla97C02G040530	Watermelon (97103) v2	lsiwmbB087
Lsi11G006530	Bhi06G001354	Wax gourd	lsiwgoB101
Lsi11G006530	Cp4.1LG11g08610	Cucurbita pepo (Zucchini)	cpelsiB075
Lsi11G006530	CsGy2G005020	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G006530	Carg11991	Silver-seed gourd	carlsiB510
Lsi11G006530	CsaV3_2G007260	Cucumber (Chinese Long) v3	cuclsiB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G006530	Bottle gourd (USVL1VR-Ls)	lsilsiB002
Lsi11G006530	Cucurbita moschata (Rifu)	cmolsiB034
Lsi11G006530	Cucurbita moschata (Rifu)	cmolsiB331
Lsi11G006530	Melon (DHL92) v3.5.1	lsimeB105
Lsi11G006530	Watermelon (Charleston Gray)	lsiwcgB105
Lsi11G006530	Watermelon (Charleston Gray)	lsiwcgB111
Lsi11G006530	Watermelon (97103) v1	lsiwmB094
Lsi11G006530	Melon (DHL92) v3.6.1	lsimedB112
Lsi11G006530	Watermelon (97103) v2	lsiwmbB099