CmoCh05G010730 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G010730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Trafficking protein particle complex subunit-like protein
Location	Cmo_Chr05 : 8639489 .. 8643934 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTCTTGTGCCGATTAATTTACTGCTATCGGTACATAACAAAAGCCTAAGCTACACTCTCGCCATTGTGTCTTTCAAGTTCCCCTCTATCAAGTGAGGTGAAACTATCTGATATGGCATATATCTTTCATCAAACATCTCAAGCCTATTGATAATTTTGTGGTTGTCAGTCCCATATTGCATATCATTTTACCATGATCATCACACAACAGAAACATAAGCTATGTCTTTTAAGGTTTTTCATGATATGGCAGATATCAGAATCACATAACTCTTGCTTGTTTCAATTTATGACCAACTGGTTCTGTTCATAACAGACCCATTAGTATTCATTGCCTGTATTAGACTCTTCCATCTTGTCGTTCAAGTTCTTTGTGAGATGGGAATGAGTGCAACAAAGACGTTGGACCTCGAAGGGGTGTGGATTGTGAAATTCCACATCGATTAGAGTGGAACTAGTGCTAGCGAGGATGCTGAGCCCTAAAGGGGGTGGATTGTGAGATTCCACGTTGGTTGGAGAGGGAAATGAAACATTTTTTTATAAAGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTCAAAAATCTTGAGGGAAAACCCGAAAGGAAAAATTCGAAGAGAACAATATGTGTTAGAGAAAACTCAAAGAGAACAATGTCTGCTAGCGGTGAGCTTGGGCGGTTACATTCTTCCAAGTTATTTGTAGCTATGCAGTTGTTCCTACAATACAACCGGTAAGATAAAGTTTTAATGGTTACTAGCTTGTTTGAAATCGACGTGCTTAGGGACGGTCTTGTGCTGATTTGATTATTAAGCCATCAGCACATAACAAAACCCTAAGCTATATGGTTGCTGCTCTGTATCTTTAGTTTTTCCTTGAGTTTATATTTGGAGAAACTTTCTACACTGTGGCTTACATGTACACTCACTCACAAACAAGCTGCATATATGAATGTAGTTTTTGGCTAGATCACTGATGAGATCGGTCTTCATTCTTCACGTATTGTGCTAGTTCTGAGATAAAGACTGCTCCTGTTGTCTATCAGGGGGGATGGGGTGTTTACTTTTGCATGGTTTTTGTTACATTACTATTAGATAAACTACCTGGGCAAGGCTAGAAAGCGTTGGATTGCTATCTATCCTTCCGGTTTACCTTCGTACTTTTATTGCTTCACAACTTCATCATGGTCATGGATGAATTCCCCAGGTTCGGGTATAAACAGTGGAAATTACCCCATGAATGCTTGTCTGGTTGGGGAAATCTTTTGGATCAACTTGATTCTGACTTCATGCAGGTGAGTTGCAGCCTACAATCCAAACTGAGGGTGGGTTTTTGGAATTGGCTCACCCTCATGGGATCACGACCCTTTGTCCCGGCCATTGTAGCATGTGTCACCCAGATAAGGGGCATGATGACTTGACATCATCCTCACCTTCCTCCGGTTTATCACCACAGTTTGCTCAGGGTTCCAACCTCAATGGTTGGCAACGAAATCTTGGGTTGGTTATTCTTTTTCTTTTTTTAATTATTTTAAAAAAAAAAATTACTTATTCACATGTTAGGTTAATAACTAAATTCTCGTGTTGTTCAGATATCTAATATTCATAAGTGTCAGCTATATCATATTAACATTTGTCACAAATGTTAAATATTCTCAATCTTTGTAATAATCTCAAAAGAAAACTCGACGATGTCGCAAATTCGGTTCCCAACCATTGAATTGGGGCATTCCCCACAACAATGCCGAGAACGCAAAAGAATACTCGACGGTGTTGCAAATTTGATTCCCAACGATTGAACTGGGGCCATTCCCCACAACAAATGCCGAGAAATATTTTTTGTATGCGTGTGAAAAAACCACGCAAAATAAAACGCACAATCGAATTAGCGCATTGTAGCGAATTAGGGCAGAACAACAATCGAATTAGGGCATTCAGGGTTGTAACTCTCATTGGGTTAACTTAACTAAAAAAATGTTAATTCCGTAATATTTTTTTTAAAAAAATTTTAATTGAAAAATAAAATTAATTTTTGATATAAAAAAAAAAATCTTAACTCTTTGTTAGTAATTAGCAAAAAAAAGAAAAAAGAAAAAAGATTATCATATTTCGCTCTAAATTAAATTAATTTAAAGAAATCTTAAATAAATGAGAAATTATGTATTATCAAATTTTTAAAAGGTTGATTTATATAAAAATTAGTTTAATTATTAATTTAATGTTTTAAATGGGCCTCTCTTCCATCCAGTCTCAAGAGCTCCCGAAACTCCCCCCACTGGCTTATGATCGGCGATCATTGAAACAGGATTTTGCGCCTTTGAATCTACACTGACAATCGCTTTCATTCCATTTCTTTCAGAGGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGTAATCAACAAATGGAAACTACTTATTAATGCAATTAGAAACTAGATTCTGCTAATTCCCATCTGGATTGGGAGTTTTGATGCTTAATTTGGTATCTGAAACGAAAAACAAATATGAACCCCAAATCATGATTCCAGTTTGTTTATCAGATTTTCAATCGACCTTCTCTTACTTATGAATTATAAACCGGTTGTGAGTGGAATTATTTTAATCTTCGAATTGAATCTCTAGTTGGCTTGTTTGAAAATTTAGGATTATGGATCTGCTGGACGAATGGACACGAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTTCTTCCACTACTTTGTTTAATTTGTGCTTTAAACGAATGGATTCTGTCTCAAACTATGTTCCGAAGACACGCAATCAAATTCCTAATGTGAAAGCACAATTGAAGTTCTAGGAACCTTATTGATCTTTTGTGAGATCCTATATTGGTTGGAGAGAGGAACGAAACACTCCTTATAAAGGTGTGGAAACCTCTCCCTAATAGACACATTTAAAACCTTGAGGGGAACCCCGAAAAAGAAAATCCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGACTGTTACCGAGTAATGTGCCAGCAAGGACGCTGGCCCCCAAGAAGGTGGATTGTGAAATCCTACATCGGTTAGAGAGGGGAACGAATCATTCCTTATAAGGGTGTGTAAACCTCTCTCTAGTAGACATGTTTTAAAACCTTGAGGGGAAGTCCGAAAAGGAAAGTCCAAAGAAGACAATATCTGCTAGCAGTAGGCTTGAGTTGTTCAAATGATATCTGCTAGCAGTAGGAAATCTCTCTCTAGCGAGGACGTTTGTCCCTATCAAGGGGGTGGATTGTGAGATCCTACATCAATTGGAGAGAGAAACGAAACATTTCTTATAAAGTTGTGGAAACCGTCCCTATAAGGGGGGTGGATTGTGAGATCCTACATCAGTTGGAGAGAGGAACGAAACATTTCTTATAAAGTTGTGGAAACCTCTCCCTAGTAGACGTGTTTTAAAACCGTGAGAGGAAACCCAAAAGGGAAAACTTAAAAAGGACAATATTAGCTAGCAGTGGGCTTGGGCTGTTGTATCTTTCTTGTCTTGAGTTCAGCTCAACAATATATGGGATTTCAAACACAACAGTTGTTGAGATTATAATGCCTTAACTTTCATGTTATATTCATTTTCTAGTTCTTAGTTATGAAGCTGAATCATGGATGAACTTGGCTGTTATAGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGAGCTTTCGATATCCTTCATTTTGCCAGTATTAACCATCCACAATTCAAGAAAGAAAGGCTCATTGCCTGCTAAATGTACTCCATGAATAGTGACTCGTTTGATATTTGGTGGAAATAGAATGGTCCTTTTCTGTGTTCACTGGATAATCATGGTTAATTTTATATCCAATTTTCCGAATGATTAACGTTTGATCAGTTTAGATAAAAGAATGCATCCATTTCATGATTTTCATCACTGAATGCATCTGTAGTTGGGACATGTTTTCATCTGCCTGACCTGACTGCAACCAATTATGCAGGCTTGAAGTTGCACTATGAACTGATAGGTATTGGAAGCATTTCTCAGAACTTGGTCATTTGCTATCAAGGTCAGGCCAATATCATCTGCTAAATTTTCCAAGTTGCCAATATCATCTGC

mRNA sequence

ATGGACGGTCTTGTGCCGATTAATTTACTGCTATCGATAAACTACCTGGGCAAGGCTAGAAAGCGTTGGATTGCTATCTATCCTTCCGGTTTACCTTCGTACTTTTATTGCTTCACAACTTCATCATGGTCATGGATGAATTCCCCAGGTGAGTTGCAGCCTACAATCCAAACTGAGGGTGGGTTTTTGGAATTGGCTCACCCTCATGGGATCACGACCCTTTGTCCCGGCCATTGTAGCATGTGTCACCCAGATAAGGGGCATGATGACTTGACATCATCCTCACCTTCCTCCGGTTTATCACCACAGTTTGCTCAGGGTTCCAACCTCAATGGTTGGCAACGAAATCTTGGGTTGAGGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACGAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGAGCTTTCGATATCCTTCATTTTGCCAGTATTAACCATCCACAATTCAAGAAAGAAAGGCTCATTGCCTGCTAAATGTACTCCATGAATAGTGACTCGTTTGATATTTGGTGGAAATAGAATGGTCCTTTTCTGTGTTCACTGGATAATCATGGTTAATTTTATATCCAATTTTCCGAATGATTAACGTTTGATCAGTTTAGATAAAAGAATGCATCCATTTCATGATTTTCATCACTGAATGCATCTGTAGTTGGGACATGTTTTCATCTGCCTGACCTGACTGCAACCAATTATGCAGGCTTGAAGTTGCACTATGAACTGATAGGTATTGGAAGCATTTCTCAGAACTTGGTCATTTGCTATCAAGGTCAGGCCAATATCATCTGCTAAATTTTCCAAGTTGCCAATATCATCTGC

Coding sequence (CDS)

ATGGACGGTCTTGTGCCGATTAATTTACTGCTATCGATAAACTACCTGGGCAAGGCTAGAAAGCGTTGGATTGCTATCTATCCTTCCGGTTTACCTTCGTACTTTTATTGCTTCACAACTTCATCATGGTCATGGATGAATTCCCCAGGTGAGTTGCAGCCTACAATCCAAACTGAGGGTGGGTTTTTGGAATTGGCTCACCCTCATGGGATCACGACCCTTTGTCCCGGCCATTGTAGCATGTGTCACCCAGATAAGGGGCATGATGACTTGACATCATCCTCACCTTCCTCCGGTTTATCACCACAGTTTGCTCAGGGTTCCAACCTCAATGGTTGGCAACGAAATCTTGGGTTGAGGACTTTAGAAGTTTCAACCCGGAAAGATCTGAAGAGGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACGAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCTGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGATCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGGACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGGTGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGA

Homology

[Close]

BLAST of CmoCh05G010730 vs. Swiss-Prot
Match: TPPC4_DICDI (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.2e-33
Identity = 66/125 (52.80%), Postives = 91/125 (72.80%), Query Frame = 1


Query: 136 IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCS-GTELL 195
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG S G E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 196 EADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCEL 255
           E + F L CFQ+ TG KF+V+ +P    +E LL  +YELYTDYVLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 256 FDINL 260
           FD  L
Sbjct: 123 FDYKL 127

[Close]

BLAST of CmoCh05G010730 vs. Swiss-Prot
Match: TPPC4_BOVIN (Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 159 RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 218
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 219 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 265
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmoCh05G010730 vs. Swiss-Prot
Match: TPPC4_MOUSE (Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 159 RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 218
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 219 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 265
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmoCh05G010730 vs. Swiss-Prot
Match: TPPC4_RAT (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 159 RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 218
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 219 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 265
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmoCh05G010730 vs. Swiss-Prot
Match: TPPC4_HUMAN (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-29
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 1


Query: 159 RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 218
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 219 GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 265
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CmoCh05G010730 vs. TrEMBL
Match: A0A0A0LJ20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034720 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.3e-72
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. TrEMBL
Match: M5W1B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012108mg PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.4e-71
Identity = 133/144 (92.36%), Postives = 137/144 (95.14%), Query Frame = 1


Query: 130 LKRMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCS 189
           L  MAAIYSLYIINKSGGLIFYKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSPISGC 
Sbjct: 40  LLEMAAIYSLYIINKSGGLIFYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPISGCF 99

Query: 190 GTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMP 249
           G ELL+ADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLK+IYELYTDYVLKNPFYEMEMP
Sbjct: 100 GIELLQADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKHIYELYTDYVLKNPFYEMEMP 159

Query: 250 IRCELFDINLVQAVQKDRVALLGR 274
           IRCELFDINL QA+QKDRVALL R
Sbjct: 160 IRCELFDINLTQAIQKDRVALLAR 183

[Close]

BLAST of CmoCh05G010730 vs. TrEMBL
Match: A5C3J4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00710 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 5.7e-71
Identity = 134/141 (95.04%), Postives = 135/141 (95.74%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSP  GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPTLGCSGIE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLK IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLSQAVQKDRVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. TrEMBL
Match: V4SNT4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012951mg PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.7e-71
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 1


Query: 114 QRNLGLRTLEVSTRKDLKRMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWH 173
           Q ++ L+   + + K    MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWH
Sbjct: 6   QDSIALKLSLIDSEKKRFPMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWH 65

Query: 174 SMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYEL 233
           SMH ISQQLSP +GCSG ELLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLK IYEL
Sbjct: 66  SMHVISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKDIYEL 125

Query: 234 YTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLGR 274
           YTDYVLKNPFYEMEMPIRCELFDINL QAVQKDRVA+LGR
Sbjct: 126 YTDYVLKNPFYEMEMPIRCELFDINLSQAVQKDRVAMLGR 165

[Close]

BLAST of CmoCh05G010730 vs. TrEMBL
Match: A0A067E7I4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032406mg PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.7e-71
Identity = 133/141 (94.33%), Postives = 135/141 (95.74%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP +GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPTTGCSGIE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLK IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQKDRVA+LGR
Sbjct: 121 ELFDINLSQAVQKDRVAMLGR 141

[Close]

BLAST of CmoCh05G010730 vs. TAIR10
Match: AT5G02280.1 (AT5G02280.1 SNARE-like superfamily protein)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-71
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQ DRVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. TAIR10
Match: AT1G51160.1 (AT1G51160.1 SNARE-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 1


Query: 137 YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 196
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 197 ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 256
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 257 NPFYEMEMPIRCELFDINLVQAVQ 265
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]

BLAST of CmoCh05G010730 vs. NCBI nr
Match: gi|1009177989|ref|XP_015870278.1| (PREDICTED: trafficking protein particle complex subunit 4 [Ziziphus jujuba])

HSP 1 Score: 282.0 bits (720), Expect = 1.1e-72
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSPISGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRMASLWHSMHAISQQLSPISGCSGIE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLK+IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKHIYELYTDYVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QA+QKDRVALLGR
Sbjct: 121 ELFDINLSQAIQKDRVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. NCBI nr
Match: gi|449453994|ref|XP_004144741.1| (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 3.3e-72
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. NCBI nr
Match: gi|747080528|ref|XP_011087516.1| (PREDICTED: trafficking protein particle complex subunit 4 [Sesamum indicum])

HSP 1 Score: 280.4 bits (716), Expect = 3.3e-72
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSP+SGCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRLASLWHSMHAISQQLSPVSGCSGIE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LL+ADTFDLHCFQSLTGTKFFVVCEPGTLHME LLK+IYELYTDYVLKNPFYEMEMPIRC
Sbjct: 61  LLQADTFDLHCFQSLTGTKFFVVCEPGTLHMENLLKHIYELYTDYVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. NCBI nr
Match: gi|659070068|ref|XP_008453237.1| (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 9.7e-72
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 1


Query: 133 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 192
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 193 LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 252
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 253 ELFDINLVQAVQKDRVALLGR 274
           ELFDINL QAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CmoCh05G010730 vs. NCBI nr
Match: gi|595829988|ref|XP_007205977.1| (hypothetical protein PRUPE_ppa012108mg [Prunus persica])

HSP 1 Score: 276.2 bits (705), Expect = 6.3e-71
Identity = 133/144 (92.36%), Postives = 137/144 (95.14%), Query Frame = 1


Query: 130 LKRMAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCS 189
           L  MAAIYSLYIINKSGGLIFYKDYGS+GRMDTNDSLRVASLWHSMHAISQQLSPISGC 
Sbjct: 40  LLEMAAIYSLYIINKSGGLIFYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPISGCF 99

Query: 190 GTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMP 249
           G ELL+ADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLK+IYELYTDYVLKNPFYEMEMP
Sbjct: 100 GIELLQADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKHIYELYTDYVLKNPFYEMEMP 159

Query: 250 IRCELFDINLVQAVQKDRVALLGR 274
           IRCELFDINL QA+QKDRVALL R
Sbjct: 160 IRCELFDINLTQAIQKDRVALLAR 183

The following BLAST results are available for this feature:

BLAST of CmoCh05G010730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPPC4_DICDI	5.2e-33	52.80	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=tr...	[more]
TPPC4_BOVIN	1.2e-29	56.60	Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=...	[more]
TPPC4_MOUSE	1.2e-29	56.60	Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 S...	[more]
TPPC4_RAT	1.2e-29	56.60	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 P...	[more]
TPPC4_HUMAN	2.7e-29	55.66	Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 S...	[more]

BLAST of CmoCh05G010730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ20_CUCSA	2.3e-72	95.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034720 PE=4 SV=1	[more]
M5W1B8_PRUPE	4.4e-71	92.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012108mg PE=4 SV=1	[more]
A5C3J4_VITVI	5.7e-71	95.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00710 PE=4 SV=...	[more]
V4SNT4_9ROSI	9.7e-71	84.38	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012951mg PE=4 SV=1	[more]
A0A067E7I4_CITSI	9.7e-71	94.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032406mg PE=4 SV=1	[more]

BLAST of CmoCh05G010730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02280.1	1.0e-71	90.78	SNARE-like superfamily protein	[more]
AT1G51160.1	1.3e-10	27.78	SNARE-like superfamily protein	[more]

BLAST of CmoCh05G010730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009177989\|ref\|XP_015870278.1\|	1.1e-72	95.74	PREDICTED: trafficking protein particle complex subunit 4 [Ziziphus jujuba]	[more]
gi\|449453994\|ref\|XP_004144741.1\|	3.3e-72	95.74	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis sativus]	[more]
gi\|747080528\|ref\|XP_011087516.1\|	3.3e-72	95.04	PREDICTED: trafficking protein particle complex subunit 4 [Sesamum indicum]	[more]
gi\|659070068\|ref\|XP_008453237.1\|	9.7e-72	95.04	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo]	[more]
gi\|595829988\|ref\|XP_007205977.1\|	6.3e-71	92.36	hypothetical protein PRUPE_ppa012108mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007233	TRAPPC
IPR011012	Longin-like_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030008	TRAPP complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0006810	transport
biological_process	GO:0065009	regulation of molecular function
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030008	TRAPP complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0017112	Rab guanyl-nucleotide exchange factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010730.1	CmoCh05G010730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	SYNBINDIN	coord: 103..273 score: 7.3
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 136..265 score: 8.4
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 136..266 score: 1.2
IPR011012	Longin-like domain	unknown	SSF64356	SNARE-like	coord: 133..265 score: 3.02
None	No IPR available	GENE3D	G3DSA:3.30.450.70		coord: 133..265 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G010730	Cucsa.090460	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G010730	CmaCh05G010640	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G010730	Cla019986	Watermelon (97103) v1	cmowmB757
CmoCh05G010730	Csa2G034720	Cucumber (Chinese Long) v2	cmocuB784
CmoCh05G010730	MELO3C004163	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G010730	ClCG02G014740	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G010730	CSPI02G04890	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G010730	Lsi11G006530	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G010730	Cp4.1LG11g08610	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G010730	MELO3C004163.2	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G010730	Cla97C02G040530	Watermelon (97103) v2	cmowmbB785
CmoCh05G010730	CsGy2G005020	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G010730	Carg11991	Silver-seed gourd	carcmoB0769

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G010730	Watermelon (97103) v2	cmowmbB797
CmoCh05G010730	Wax gourd	cmowgoB0928
CmoCh05G010730	Cucurbita moschata (Rifu)	cmocmoB307
CmoCh05G010730	Cucumber (Chinese Long) v2	cmocuB775
CmoCh05G010730	Melon (DHL92) v3.5.1	cmomeB712
CmoCh05G010730	Melon (DHL92) v3.6.1	cmomedB808
CmoCh05G010730	Cucumber (Chinese Long) v3	cmocucB0914
CmoCh05G010730	Cucumber (Chinese Long) v3	cmocucB0924