Lsi11G005820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G005820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cold-regulated protein
Location	chr11 : 6193713 .. 6194351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATCGATTACAGAGCCTTCAACATAAACATCACCTGCGCGGAAGGAATCAAAGGAGTTTTAAGTTTTACAAATTTTTTCCACAAATCAAAGGTCTACGCGGCGGTTTCTGTTGTCGGAATCTCTCCGGCCGCCCAAAAAACGCCGCTAGCGAAGTACTTCGGTGAAAATCCGGTGTGGAATTTTCCAATGAGATTCTATTTGGAGGAATTGAAGCTACAAGAAAATGCCCTAACTCTGAAGATTCAACTGAGGCGAAAGCGAACATTTGGTGGAGATGAAGACATTGCTGAAGCTTTGATTCCGTTGAGAAATCTTTTAAATGGCACTGAGAATGTAATGGATGAAAATTACAGCTCCTCTTTTCTGCTCTCGAAGTCCGGCGGCCGCCGTGGTTTGGTGTATTTTTCGTATCACTTCAGCCGGGCTTACGGTGCATCCGCGGCAGGTGACGACGGAGGCGTGGTTGCTCCGCCCTCGGTCTTGGAACGTCCCCGCCTTTCGCACCGCTGTGTGTGTAGTTTTGGGTATATTGAAAGTTTGGAAATTAGTACCCTCGTTTGTATAGAGCCAAAAATATTATTGATTAGATTTAATGATGTAATATTAAATTGGTTTCAAAAAAATAAGATCTAA

mRNA sequence

ATGCCGATCGATTACAGAGCCTTCAACATAAACATCACCTGCGCGGAAGGAATCAAAGGAGTTTTAAGTTTTACAAATTTTTTCCACAAATCAAAGGTCTACGCGGCGGTTTCTGTTGTCGGAATCTCTCCGGCCGCCCAAAAAACGCCGCTAGCGAAGTACTTCGGTGAAAATCCGGTGTGGAATTTTCCAATGAGATTCTATTTGGAGGAATTGAAGCTACAAGAAAATGCCCTAACTCTGAAGATTCAACTGAGGCGAAAGCGAACATTTGGTGGAGATGAAGACATTGCTGAAGCTTTGATTCCGTTGAGAAATCTTTTAAATGGCACTGAGAATGTAATGGATGAAAATTACAGCTCCTCTTTTCTGCTCTCGAAGTCCGGCGGCCGCCGTGGTTTGGTGTATTTTTCGTATCACTTCAGCCGGGCTTACGGTGCATCCGCGGCAGGTGACGACGGAGGCGTGGTTGCTCCGCCCTCGGTCTTGGAACGTCCCCGCCTTTCGCACCGCTGTGTGTGTAGTTTTGGGTATATTGAAAGTTTGGAAATTAGTACCCTCGTTTGTATAGAGCCAAAAATATTATTGATTAGATTTAATGATGTAATATTAAATTGGTTTCAAAAAAATAAGATCTAA

Coding sequence (CDS)

ATGCCGATCGATTACAGAGCCTTCAACATAAACATCACCTGCGCGGAAGGAATCAAAGGAGTTTTAAGTTTTACAAATTTTTTCCACAAATCAAAGGTCTACGCGGCGGTTTCTGTTGTCGGAATCTCTCCGGCCGCCCAAAAAACGCCGCTAGCGAAGTACTTCGGTGAAAATCCGGTGTGGAATTTTCCAATGAGATTCTATTTGGAGGAATTGAAGCTACAAGAAAATGCCCTAACTCTGAAGATTCAACTGAGGCGAAAGCGAACATTTGGTGGAGATGAAGACATTGCTGAAGCTTTGATTCCGTTGAGAAATCTTTTAAATGGCACTGAGAATGTAATGGATGAAAATTACAGCTCCTCTTTTCTGCTCTCGAAGTCCGGCGGCCGCCGTGGTTTGGTGTATTTTTCGTATCACTTCAGCCGGGCTTACGGTGCATCCGCGGCAGGTGACGACGGAGGCGTGGTTGCTCCGCCCTCGGTCTTGGAACGTCCCCGCCTTTCGCACCGCTGTGTGTGTAGTTTTGGGTATATTGAAAGTTTGGAAATTAGTACCCTCGTTTGTATAGAGCCAAAAATATTATTGATTAGATTTAATGATGTAATATTAAATTGGTTTCAAAAAAATAAGATCTAA

Protein sequence

MPIDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPVWNFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSSSFLLSKSGGRRGLVYFSYHFSRAYGASAAGDDGGVVAPPSVLERPRLSHRCVCSFGYIESLEISTLVCIEPKILLIRFNDVILNWFQKNKI

Homology

[Close]

BLAST of Lsi11G005820 vs. Swiss-Prot
Match: SRC2_SOYBN (Protein SRC2 OS=Glycine max GN=SRC2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 56/152 (36.84%), Postives = 79/152 (51.97%), Query Frame = 1


Query: 1   MPIDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVG--ISPAAQKTPLAKYFGEN 60
           M ++YR   +NI  A+ IK V    N F K  VYAAVS+ G  + P    T + K  G N
Sbjct: 1   MTMEYRTLELNIISAKDIKNV----NLFSKMDVYAAVSLSGDPLHPQGATTHVHKDAGSN 60

Query: 61  PVWNFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDEN 120
           P WN+P++F + E   +EN L+L+I+L   RT  GD  I    +PLR LL+   +     
Sbjct: 61  PTWNYPVKFSVNESLAKENRLSLEIKLISDRTL-GDTVIGTVHVPLRELLDNPGDDSSFR 120

Query: 121 YSSSFLLSKSGGRRGLVYFSYHFSRAYGASAA 151
             S  ++ +S   +G + FSY F     A AA
Sbjct: 121 QVSYQVMKQSRKSKGSLNFSYKFGEHVPAPAA 147

[Close]

BLAST of Lsi11G005820 vs. Swiss-Prot
Match: SRC2_ARATH (Protein SRC2 homolog OS=Arabidopsis thaliana GN=SRC2 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-11
Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPVWN 62
           ++ R+ ++ I  AE +K V        K  +YA VS+ G +   QKT + K  G  P W 
Sbjct: 1   MECRSLDLTIISAEDLKDV----QLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWK 60

Query: 63  FPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSSS 122
             M+  +++   ++N LTL  ++   R   GD+ + E  +P++ LL+  +N  DE  + +
Sbjct: 61  HQMKLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLD--QNKGDEEKTVT 120

Query: 123 FLLSKSGGR-RGLVYFSYHFSRAYGASAAGDDGGVVAP-PSVLE 165
           + +    G+ +G + FS+ F   Y     G   G  AP PS ++
Sbjct: 121 YAVRLPNGKAKGSLKFSFKFGEKY---TYGSSSGPHAPVPSAMD 155

[Close]

BLAST of Lsi11G005820 vs. TrEMBL
Match: A0A0A0LIU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030590 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.1e-64
Identity = 132/183 (72.13%), Postives = 144/183 (78.69%), Query Frame = 1


Query: 1   MPIDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPV 60
           M IDYR  ++NIT AEGIKGVLSFTNFF KSKVYAAVSV G   A Q+TPLAKYFG+NPV
Sbjct: 1   MLIDYRVLDLNITSAEGIKGVLSFTNFFFKSKVYAAVSVDGTPSATQETPLAKYFGKNPV 60

Query: 61  WNFPMRFYLEELKLQENALTLKIQLRRKRTFG-GDEDIAEALIPLRNLLNGTENVMDENY 120
           WN  MRF+LEE KLQENALTLKI+L+R+RTFG  DEDIAEA IPLRNL NG ENV +EN 
Sbjct: 61  WNCSMRFHLEESKLQENALTLKIKLKRRRTFGRDDEDIAEASIPLRNLFNGNENVTNENC 120

Query: 121 SSSFLLSKSGGRRGLVYFSYHFSRAYGASAAGDDGGVVAPPSVLERPRLSHRCVCSFGYI 180
           SSSF+LSKSGG RGLVYFSY FSR Y AS A DDG  VAPP   ERP L+HR   S G  
Sbjct: 121 SSSFMLSKSGGLRGLVYFSYCFSRTYNASDASDDGATVAPPLAFERPPLAHRSDLSCGVF 180

Query: 181 ESL 183
           + L
Sbjct: 181 DLL 183

[Close]

BLAST of Lsi11G005820 vs. TrEMBL
Match: A0A161Y5A3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024563 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 56/141 (39.72%), Postives = 85/141 (60.28%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAA-QKTPLAKYFGENPVW 62
           ++YR  ++N+  A+G+K V    N F K +VYA V+V G  P A Q+TP  K  G NP W
Sbjct: 1   MEYRTLDVNLIAAKGLKNV----NLFSKLEVYAVVTVFGGDPRAKQRTPTDKINGVNPTW 60

Query: 63  NFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSS 122
           NFPM+F ++E+  Q+N LTL I LR +R   GD+D+ E  +P++ ++  ++ V   +Y  
Sbjct: 61  NFPMKFTVDEVAAQQNHLTLVITLRAERAL-GDKDVGEVRVPMKEIMVDSKGVQFVSYQ- 120

Query: 123 SFLLSKSGGRRGLVYFSYHFS 143
             +   SG  +G + FSY FS
Sbjct: 121 --VRKASGKPKGELRFSYEFS 133

[Close]

BLAST of Lsi11G005820 vs. TrEMBL
Match: F6HE67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01400 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 59/165 (35.76%), Postives = 87/165 (52.73%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPVWN 62
           ++YR   IN+  A+ +K V    N   K  VY  VS+ G S + QKTP+ +  G NP WN
Sbjct: 1   MEYRTLEINVISAKDLKDV----NLISKMDVYVVVSINGDSRSKQKTPVDRDGGTNPTWN 60

Query: 63  FPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSSS 122
           FPM+F ++E   Q+N LTL  +LR +RT  GD+DI E  +P++ LL+         + S 
Sbjct: 61  FPMKFTVDESAAQQNRLTLSFKLRCERTL-GDKDIGEVNVPIKELLDPAGESKPIQFVSY 120

Query: 123 FLLSKSGGRRGLVYFSYHF-SRAYGASAAGDDGGVVAPPSVLERP 167
            +   SG  +G +  SY F  ++   SA      V+A P   + P
Sbjct: 121 QVRKPSGKPKGELNLSYKFGEKSMSQSATKAQEPVMAYPPAADEP 160

[Close]

BLAST of Lsi11G005820 vs. TrEMBL
Match: W9S0L4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006668 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 62/175 (35.43%), Postives = 101/175 (57.71%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYF--GENPV 62
           +DYRAF+IN+   EG+K    F+ F  K K YA V++V  S + QK+ L K    G+  +
Sbjct: 1   MDYRAFDINLASLEGLKSQ-KFSLF--KIKYYAVVTLVATSISRQKSRLGKSHEGGKCHI 60

Query: 63  WNFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNG--TENVMDEN 122
           WN PMRFY  E KLQ+N++ L +Q+RR+R F  D+D+ +  +PL+ L +   ++N  + N
Sbjct: 61  WNHPMRFYANESKLQQNSIMLMVQIRRRRAFCMDKDVGKVCVPLKQLYDKSLSQNGNNIN 120

Query: 123 YSSSF-LLSKSGGRRGLVYFSYHFSRAYGASA---AGDDGGVVAPPSVLERPRLS 170
              ++ +++ S   +G + FS+ FS  +  +    +G+DG      SV  R  +S
Sbjct: 121 NVGAYRVVTASRKYKGSLCFSFTFSNEFRRAVRKNSGEDGSSTLRRSVARRHSVS 172

[Close]

BLAST of Lsi11G005820 vs. TrEMBL
Match: W9S9Y7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002540 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 62/173 (35.84%), Postives = 100/173 (57.80%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYF--GENPV 62
           +DYRAF+IN+   EG+K    F+ F  K K YA V++V  S + QK+ L K    G+  +
Sbjct: 1   MDYRAFDINLASLEGLKSQ-KFSLF--KIKYYAVVTLVATSISRQKSRLGKSHEGGKCHI 60

Query: 63  WNFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNG--TENVMDEN 122
           WN PMR Y +E KLQ+N++ L +Q+RR+R F  D+DI E  +PL+ L +   ++N  + N
Sbjct: 61  WNHPMRVYADESKLQQNSIMLMVQIRRRRAFCMDKDIGEVCVPLKQLYDKSLSQNGNNIN 120

Query: 123 YSSSF-LLSKSGGRRGLVYFSYHFSRAYGASA---AGDDGGVVAPPSVLERPR 168
              ++ +++ S   +G + FS+ FS  +  +    +G++G      SV  R R
Sbjct: 121 NVGAYRVVTASRKYKGSLCFSFTFSDEFRRAVRKNSGEEGSSTRRRSVARRRR 170

[Close]

BLAST of Lsi11G005820 vs. TAIR10
Match: AT1G09070.1 (AT1G09070.1 soybean gene regulated by cold-2)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPVWN 62
           ++ R+ ++ I  AE +K V        K  +YA VS+ G +   QKT + K  G  P W 
Sbjct: 1   MECRSLDLTIISAEDLKDV----QLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWK 60

Query: 63  FPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSSS 122
             M+  +++   ++N LTL  ++   R   GD+ + E  +P++ LL+  +N  DE  + +
Sbjct: 61  HQMKLTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLD--QNKGDEEKTVT 120

Query: 123 FLLSKSGGR-RGLVYFSYHFSRAYGASAAGDDGGVVAP-PSVLE 165
           + +    G+ +G + FS+ F   Y     G   G  AP PS ++
Sbjct: 121 YAVRLPNGKAKGSLKFSFKFGEKY---TYGSSSGPHAPVPSAMD 155

[Close]

BLAST of Lsi11G005820 vs. TAIR10
Match: AT3G05440.1 (AT3G05440.1 C2 domain-containing protein)

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-09
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1


Query: 5   YRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPVWNFP 64
           Y+   IN+  A+ +  +    N   +  VY +VSV   S   Q TP A +  +   WN+ 
Sbjct: 4   YQPVEINVLSAQDLNSI----NLLFRPTVYVSVSVTRGSRDKQVTPAAAWDKKFLRWNYR 63

Query: 65  MRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIP 104
           M+FY+E+ K++ N      Q++ KR FG D+ + +  IP
Sbjct: 64  MKFYIEDDKVRRNESVFVFQIKCKRFFGSDQVVGKLFIP 98

[Close]

BLAST of Lsi11G005820 vs. TAIR10
Match: AT4G15755.1 (AT4G15755.1 Calcium-dependent lipid-binding (CaLB domain) family protein)

HSP 1 Score: 52.8 bits (125), Expect = 3.1e-07
Identity = 40/142 (28.17%), Postives = 67/142 (47.18%), Query Frame = 1


Query: 10  INITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQ---KTPLAKYFGENPVWNFPMR 69
           +NI  A  +  V    N   K  V+ A+++ G +   +   KT + +Y G NP WN  ++
Sbjct: 8   LNINSARNLLNV----NLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQTIK 67

Query: 70  FYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTE-------NVMDENY 129
           F ++E   +    +L +++  +R   G+++I    IPL  LLN T        N  +   
Sbjct: 68  FSVDERSARGGHSSLVMRVISRRVL-GNKEIGRVNIPLLELLNATTPSFNGDGNDHEMKL 127

Query: 130 SSSFLLSKSGGRRGLVYFSYHF 142
            S  + + SG R G + FSY F
Sbjct: 128 MSYQVRTSSGKRSGSLSFSYRF 144

[Close]

BLAST of Lsi11G005820 vs. NCBI nr
Match: gi|700205830|gb|KGN60949.1| (hypothetical protein Csa_2G030590 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 4.4e-64
Identity = 132/183 (72.13%), Postives = 144/183 (78.69%), Query Frame = 1


Query: 1   MPIDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPV 60
           M IDYR  ++NIT AEGIKGVLSFTNFF KSKVYAAVSV G   A Q+TPLAKYFG+NPV
Sbjct: 1   MLIDYRVLDLNITSAEGIKGVLSFTNFFFKSKVYAAVSVDGTPSATQETPLAKYFGKNPV 60

Query: 61  WNFPMRFYLEELKLQENALTLKIQLRRKRTFG-GDEDIAEALIPLRNLLNGTENVMDENY 120
           WN  MRF+LEE KLQENALTLKI+L+R+RTFG  DEDIAEA IPLRNL NG ENV +EN 
Sbjct: 61  WNCSMRFHLEESKLQENALTLKIKLKRRRTFGRDDEDIAEASIPLRNLFNGNENVTNENC 120

Query: 121 SSSFLLSKSGGRRGLVYFSYHFSRAYGASAAGDDGGVVAPPSVLERPRLSHRCVCSFGYI 180
           SSSF+LSKSGG RGLVYFSY FSR Y AS A DDG  VAPP   ERP L+HR   S G  
Sbjct: 121 SSSFMLSKSGGLRGLVYFSYCFSRTYNASDASDDGATVAPPLAFERPPLAHRSDLSCGVF 180

Query: 181 ESL 183
           + L
Sbjct: 181 DLL 183

[Close]

BLAST of Lsi11G005820 vs. NCBI nr
Match: gi|1009116869|ref|XP_015875009.1| (PREDICTED: protein SRC2 homolog [Ziziphus jujuba])

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 61/166 (36.75%), Postives = 95/166 (57.23%), Query Frame = 1


Query: 3   IDYRAFNINITCAEG--IKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYFGENPV 62
           ++YR+ +IN+TC EG  +K +     FF + K+YA VS+VG S   QKTP+ K+ G    
Sbjct: 1   MEYRSLDINVTCLEGFQVKNL-----FFKRPKIYATVSIVGSSRTTQKTPVGKFAGSFQR 60

Query: 63  WNFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYS 122
           W++PMRFY+EE  LQEN L L I+LR  RT   D+D+ E  +P++ L    ++    +Y 
Sbjct: 61  WDYPMRFYIEESMLQENCLMLMIRLRSSRTLCRDKDVGEVYVPIKQLFLHNDH---NSYF 120

Query: 123 SSFLLSKSGGRRGLVYFSYHFSRAYGASAAGDDGGVVAPPSVLERP 167
              + + SG  +G ++FSY FS    +S+      V+   ++   P
Sbjct: 121 GYQVHTASGKPKGRLHFSYKFSDRKRSSSLSTSKAVIEHVNLTSPP 158

[Close]

BLAST of Lsi11G005820 vs. NCBI nr
Match: gi|1021029644|gb|KZM87429.1| (hypothetical protein DCAR_024563 [Daucus carota subsp. sativus])

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-18
Identity = 56/141 (39.72%), Postives = 85/141 (60.28%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAA-QKTPLAKYFGENPVW 62
           ++YR  ++N+  A+G+K V    N F K +VYA V+V G  P A Q+TP  K  G NP W
Sbjct: 1   MEYRTLDVNLIAAKGLKNV----NLFSKLEVYAVVTVFGGDPRAKQRTPTDKINGVNPTW 60

Query: 63  NFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSS 122
           NFPM+F ++E+  Q+N LTL I LR +R   GD+D+ E  +P++ ++  ++ V   +Y  
Sbjct: 61  NFPMKFTVDEVAAQQNHLTLVITLRAERAL-GDKDVGEVRVPMKEIMVDSKGVQFVSYQ- 120

Query: 123 SFLLSKSGGRRGLVYFSYHFS 143
             +   SG  +G + FSY FS
Sbjct: 121 --VRKASGKPKGELRFSYEFS 133

[Close]

BLAST of Lsi11G005820 vs. NCBI nr
Match: gi|703131640|ref|XP_010104926.1| (hypothetical protein L484_006668 [Morus notabilis])

HSP 1 Score: 95.9 bits (237), Expect = 9.0e-17
Identity = 62/175 (35.43%), Postives = 101/175 (57.71%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAAQKTPLAKYF--GENPV 62
           +DYRAF+IN+   EG+K    F+ F  K K YA V++V  S + QK+ L K    G+  +
Sbjct: 1   MDYRAFDINLASLEGLKSQ-KFSLF--KIKYYAVVTLVATSISRQKSRLGKSHEGGKCHI 60

Query: 63  WNFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNG--TENVMDEN 122
           WN PMRFY  E KLQ+N++ L +Q+RR+R F  D+D+ +  +PL+ L +   ++N  + N
Sbjct: 61  WNHPMRFYANESKLQQNSIMLMVQIRRRRAFCMDKDVGKVCVPLKQLYDKSLSQNGNNIN 120

Query: 123 YSSSF-LLSKSGGRRGLVYFSYHFSRAYGASA---AGDDGGVVAPPSVLERPRLS 170
              ++ +++ S   +G + FS+ FS  +  +    +G+DG      SV  R  +S
Sbjct: 121 NVGAYRVVTASRKYKGSLCFSFTFSNEFRRAVRKNSGEDGSSTLRRSVARRHSVS 172

[Close]

BLAST of Lsi11G005820 vs. NCBI nr
Match: gi|1021027710|gb|KZM85497.1| (hypothetical protein DCAR_027081 [Daucus carota subsp. sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 1


Query: 3   IDYRAFNINITCAEGIKGVLSFTNFFHKSKVYAAVSVVGISPAA-QKTPLAKYFGENPVW 62
           ++YR  ++ I  A+G+K V    NF  K +VYA VS+ G  P   Q+TP  +  G NP W
Sbjct: 1   MEYRTLDLKIISAKGLKNV----NFISKVEVYAVVSIAGGDPRVKQRTPTDREGGVNPAW 60

Query: 63  NFPMRFYLEELKLQENALTLKIQLRRKRTFGGDEDIAEALIPLRNLLNGTENVMDENYSS 122
           NFPM+F ++E   Q+N LTL I LR +R   GD D+ E  +P++ ++ G  N     +  
Sbjct: 61  NFPMKFTIDEAAAQQNRLTLVISLRAERAL-GDRDVGEVRVPIKEII-GDGNNKSVQFVR 120

Query: 123 SFLLSKSGGRRGLVYFSYHFSRAYGAS 149
             +   SG  +G + FSY F     AS
Sbjct: 121 YQVRKPSGKAKGELNFSYQFGEKVAAS 141

The following BLAST results are available for this feature:

BLAST of Lsi11G005820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRC2_SOYBN	1.7e-15	36.84	Protein SRC2 OS=Glycine max GN=SRC2 PE=2 SV=1	[more]
SRC2_ARATH	4.3e-11	28.05	Protein SRC2 homolog OS=Arabidopsis thaliana GN=SRC2 PE=1 SV=1	[more]

BLAST of Lsi11G005820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU2_CUCSA	3.1e-64	72.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030590 PE=4 SV=1	[more]
A0A161Y5A3_DAUCA	2.0e-18	39.72	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024563 PE=4 SV=1	[more]
F6HE67_VITVI	3.7e-17	35.76	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01400 PE=4 SV=...	[more]
W9S0L4_9ROSA	6.3e-17	35.43	Uncharacterized protein OS=Morus notabilis GN=L484_006668 PE=4 SV=1	[more]
W9S9Y7_9ROSA	2.4e-16	35.84	Uncharacterized protein OS=Morus notabilis GN=L484_002540 PE=4 SV=1	[more]

BLAST of Lsi11G005820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09070.1	2.4e-12	28.05	soybean gene regulated by cold-2	[more]
AT3G05440.1	7.4e-09	31.31	C2 domain-containing protein	[more]
AT4G15755.1	3.1e-07	28.17	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]

BLAST of Lsi11G005820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205830\|gb\|KGN60949.1\|	4.4e-64	72.13	hypothetical protein Csa_2G030590 [Cucumis sativus]	[more]
gi\|1009116869\|ref\|XP_015875009.1\|	1.6e-21	36.75	PREDICTED: protein SRC2 homolog [Ziziphus jujuba]	[more]
gi\|1021029644\|gb\|KZM87429.1\|	2.8e-18	39.72	hypothetical protein DCAR_024563 [Daucus carota subsp. sativus]	[more]
gi\|703131640\|ref\|XP_010104926.1\|	9.0e-17	35.43	hypothetical protein L484_006668 [Morus notabilis]	[more]
gi\|1021027710\|gb\|KZM85497.1\|	1.2e-16	37.41	hypothetical protein DCAR_027081 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G005820.1	Lsi11G005820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000008	C2 domain	GENE3D	G3DSA:2.60.40.150		coord: 28..112 score: 9.
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 8..112 score: 8.
IPR000008	C2 domain	unknown	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 9..142 score: 1.54
None	No IPR available	PANTHER	PTHR32246	FAMILY NOT NAMED	coord: 1..145 score: 2.2
None	No IPR available	PANTHER	PTHR32246:SF18	C2 DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..145 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G005820	Carg17533	Silver-seed gourd	carlsiB654

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G005820	Melon (DHL92) v3.6.1	lsimedB112
Lsi11G005820	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G005820	Silver-seed gourd	carlsiB679
Lsi11G005820	Cucumber (Chinese Long) v3	cuclsiB014
Lsi11G005820	Cucumber (Chinese Long) v3	cuclsiB108
Lsi11G005820	Watermelon (97103) v2	lsiwmbB087
Lsi11G005820	Wax gourd	lsiwgoB101
Lsi11G005820	Bottle gourd (USVL1VR-Ls)	lsilsiB060
Lsi11G005820	Cucumber (Gy14) v1	cgylsiB100
Lsi11G005820	Cucurbita maxima (Rimu)	cmalsiB159
Lsi11G005820	Cucurbita maxima (Rimu)	cmalsiB710
Lsi11G005820	Cucurbita maxima (Rimu)	cmalsiB715
Lsi11G005820	Cucurbita maxima (Rimu)	cmalsiB821
Lsi11G005820	Cucurbita moschata (Rifu)	cmolsiB148
Lsi11G005820	Cucurbita moschata (Rifu)	cmolsiB704
Lsi11G005820	Cucurbita moschata (Rifu)	cmolsiB706
Lsi11G005820	Cucurbita moschata (Rifu)	cmolsiB808
Lsi11G005820	Cucurbita pepo (Zucchini)	cpelsiB071
Lsi11G005820	Cucurbita pepo (Zucchini)	cpelsiB075
Lsi11G005820	Cucurbita pepo (Zucchini)	cpelsiB659
Lsi11G005820	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G005820	Cucumber (Chinese Long) v2	culsiB015
Lsi11G005820	Cucumber (Chinese Long) v2	culsiB098
Lsi11G005820	Melon (DHL92) v3.5.1	lsimeB105
Lsi11G005820	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G005820	Watermelon (Charleston Gray)	lsiwcgB105
Lsi11G005820	Watermelon (Charleston Gray)	lsiwcgB098
Lsi11G005820	Watermelon (Charleston Gray)	lsiwcgB111
Lsi11G005820	Watermelon (97103) v1	lsiwmB094
Lsi11G005820	Watermelon (97103) v1	lsiwmB107
Lsi11G005820	Cucumber (Gy14) v2	cgyblsiB012
Lsi11G005820	Cucumber (Gy14) v2	cgyblsiB089