Lsi11G000130 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G000130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr11 : 113270 .. 114924 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTTATGAAGTGGACAAAATGGAGTTTTGGCCATTGCAACATCCTTTGGAACCTGATGATGAAGATCATCCTGTCATTTGCCCAATGCCCAACTCTACTTATCAGGTCGGTACAATGTGGTTTTCAGTTTCAACTCTTTGTCATATATATATTATATATCGTCCAACAGTTGTTGATGACGGCCTCATTCAATAATAATTTTTTTTCTAAATATGGGGTTTTTTTTTCCTCTTTTTCTTGTCTGCTCATGTGAGATGATAAGAGATATATTCTAATTCAATGTTAGTTAACTTAGATATAATAATTAATATGTGCATGGATTGTTATTTAGGAGTTTGTATTTTATCTACTTCAAAATGTTCATAATATAATTGTGACCTTCTCTAACACTTCTAATTTTATGTTAATTTTGTTAATCTAGAAGTTGCATGAGTAATAATAGAATTATTTAGCTCCATTTCTTAACTTTTTTTTTTTTTTGGGTTTTTGAAAATTAAAGTCTATTTCCTCTCAATTTCTTACCATAATTTGGTTCTTGAGTTGATTTCTTAATTAGCCAGATTCCATAACAAAAAACATGTTGTTAAAAACTACTTTTTTTAGTTTTCAAAAGTTGAGTTAGTTTTTGAAAATATTGGTAAAAAAATTGATAACAAAGCAAGAAATTTAGAGGTGAAATAGGTTTACAGGCTTAGTTTTCAAAAACTAAAACTCTAAAAATCAAATGGTTATCAAACAAAGCCTTAAATATTAAAGATGATTAATTGATTTTGGAGTAGTTATATTGATTAAAGTTAACATAATTTATAGGACTTATTACATGCAAAATTAGAAGGTTCTTGATTAAAACGAAGGTTTAGGAATCAAACTTATAATAAAACCCTAGTTATTAAGGATAATAATTTCATTTTTAATTTTTTTTTAAATTTTAATTTGTCTAATCAGTACTATTTGAATAATATGATTTTTACCTTTCTTAAAGAAAATTTTCAATTCTATACCAAAAAAAAAAAAAAAAAAAAAACAAGTTTTAAGAAACTAAAAGAAGCCGTTCTAAATTTTTTTTTTCAAGAGTGTGATATGTTTGAAATGGAAAACAGGAAGGAACAATGCAAAACGGGAAAAGGACACCAGAAAGCTGGAGGAAAAGAACAGAAGTGCCAAGAGAAGTAAAGGTGGCGGCGGAGACGAGGCCGGTGCGAAAGCGGCACCACCGCACTCTCAGCCGACCGGACCACCCGATGGAGGGGATGTCGCCGCGGCCAACCACCCAGAATTTCACCATCTTCCAAATGCTCCAGCAATTGGATAAATTTGAATCTTGACAACCACACACAAATTAATGCAGCACACAAGTTATATATATGGTTTAAAATATCCATGGGGAAGATTCTTGAGATGCAAATATTTTGTTCAATGTTTAGTTTTATATATATATATATATATATATAATTAAGTTTTGAGATATATTGGTGTGAATTAGAAGAAATATTTTGTTTAAAATTTTCTTATATATATATATATATTTTGGTAAAGTTAAAGTTATGCCCTTGTGGGACTCCAATTGTTAAAGTAACGCATGGGCTTTGGTATGAAAGAAAAAGGTAAATTTAGTTAAGAGAGAAGTGTTGAATATAATGAGACTTGGA

mRNA sequence

ATGAAAGTTTATGAAGTGGACAAAATGGAGTTTTGGCCATTGCAACATCCTTTGGAACCTGATGATGAAGATCATCCTGTCATTTGCCCAATGCCCAACTCTACTTATCAGGTCGGAAGGAACAATGCAAAACGGGAAAAGGACACCAGAAAGCTGGAGGAAAAGAACAGAAGTGCCAAGAGAAGTAAAGGTGGCGGCGGAGACGAGGCCGGTGCGAAAGCGGCACCACCGCACTCTCAGCCGACCGGACCACCCGATGGAGGGGATGTCGCCGCGGCCAACCACCCAGAATTTCACCATCTTCCAAATGCTCCAGCAATTGGATAAATTTGAATCTTGACAACCACACACAAATTAATGCAGCACACAAGTTATATATATGGTTTAAAATATCCATGGGGAAGATTCTTGAGATGCAAATATTTTGTTCAATGTTTAGTTTTATATATATATATATATATATATAATTAAGTTTTGAGATATATTGGTGTGAATTAGAAGAAATATTTTGTTTAAAATTTTCTTATATATATATATATATTTTGGTAAAGTTAAAGTTATGCCCTTGTGGGACTCCAATTGTTAAAGTAACGCATGGGCTTTGGTATGAAAGAAAAAGGTAAATTTAGTTAAGAGAGAAGTGTTGAATATAATGAGACTTGGA

Coding sequence (CDS)

ATGAAAGTTTATGAAGTGGACAAAATGGAGTTTTGGCCATTGCAACATCCTTTGGAACCTGATGATGAAGATCATCCTGTCATTTGCCCAATGCCCAACTCTACTTATCAGGTCGGAAGGAACAATGCAAAACGGGAAAAGGACACCAGAAAGCTGGAGGAAAAGAACAGAAGTGCCAAGAGAAGTAAAGGTGGCGGCGGAGACGAGGCCGGTGCGAAAGCGGCACCACCGCACTCTCAGCCGACCGGACCACCCGATGGAGGGGATGTCGCCGCGGCCAACCACCCAGAATTTCACCATCTTCCAAATGCTCCAGCAATTGGATAA

Protein sequence

MKVYEVDKMEFWPLQHPLEPDDEDHPVICPMPNSTYQVGRNNAKREKDTRKLEEKNRSAKRSKGGGGDEAGAKAAPPHSQPTGPPDGGDVAAANHPEFHHLPNAPAIG
Homology
[Close]
BLAST of Lsi11G000130 vs. TrEMBL
Match: A0A0A0KPE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G258200 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.0e-12
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MKVYEVDKMEFWPLQHPLEPDDEDHPVICPMPNSTYQVGR---NNAKREKDT-RKLEEKN 60
          +KV+E+DKMEFWPLQHPLEPDDEDHPVICPMPNST  +     +N KR  ++ RK  E +
Sbjct: 3  VKVFEMDKMEFWPLQHPLEPDDEDHPVICPMPNSTSLLDEGTLHNGKRTPESWRKRTEVS 62

[Close]
BLAST of Lsi11G000130 vs. NCBI nr
Match: gi|449445308|ref|XP_004140415.1| (PREDICTED: uncharacterized protein LOC101204044 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MKVYEVDKMEFWPLQHPLEPDDEDHPVICPMPNSTYQVGR---NNAKREKDT-RKLEEKN 60
          +KV+E+DKMEFWPLQHPLEPDDEDHPVICPMPNST  +     +N KR  ++ RK  E +
Sbjct: 3  VKVFEMDKMEFWPLQHPLEPDDEDHPVICPMPNSTSLLDEGTLHNGKRTPESWRKRTEVS 62

[Close]
BLAST of Lsi11G000130 vs. NCBI nr
Match: gi|659114032|ref|XP_008456876.1| (PREDICTED: uncharacterized protein LOC103496689 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.8e-11
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 1  MKVYEVDKMEFWPLQHPLEPDDEDHPVICPMPNSTYQVGR---NNAKREKDT-RKLEEKN 60
          +K +E+DKMEFWPLQHPLEPDDEDHPVICPMPNST  +     +N KR  ++ RK  E +
Sbjct: 3  VKAFEMDKMEFWPLQHPLEPDDEDHPVICPMPNSTSLLDEGTIHNGKRTPESWRKRTEVS 62

The following BLAST results are available for this feature:
BLAST of Lsi11G000130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi11G000130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPE8_CUCSA9.0e-1262.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G258200 PE=4 SV=1[more]
BLAST of Lsi11G000130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi11G000130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445308|ref|XP_004140415.1|1.3e-1162.50PREDICTED: uncharacterized protein LOC101204044 [Cucumis sativus][more]
gi|659114032|ref|XP_008456876.1|3.8e-1160.94PREDICTED: uncharacterized protein LOC103496689 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G000130.1Lsi11G000130.1mRNA