Lsi10G014180 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G014180
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L4
Locationchr10 : 18289755 .. 18292454 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGTATGACTACGGTATTTTCGTGTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCCATCCGCAGAACTCAAAGAGCGCCTCAAAACTCCTCCATCGCACCAACAATGGCGACCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCATTTCTTCCCCCAACCACCAAAATTCCAAGCTCTTCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTTGCTACTCTTCCAGTCCTCTCTTTCACCGGAGAAAAGGTCGGCGAAACCTACCTCGATCTCAAATCCGCTCCACCTGAAACCGCCCGCGCCGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACTGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTAGTGGAGGATTTTGGGGACAAGTTCGAAAAGCCGAAAACTAAAGAGTTCATCGCGGCATTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCGTTGTTCTTAATGACGGAGGTTTCTGATACTGTGCGGCTATCTAGCCGTAATATCGGTACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGACAAGTTGGTTTTGACGCCGGCGGCAGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGTTGATTTTCTTGCCTTTCTCCAATTCAATTATTCAATTAAAGAAATGACAGACTGCTTTAAGAACTTACGTTATCGTTCCATACTCTAATTTTGTCTAATTCAACATTGAAATCACATTACAGTGCCATCTTCTTCTTGAATTCTTGATTTATTCGATACCCTTTTATGACGGGCTGCCTTAGAATTATACTATGAATTCTGGTTCTGGTTCTGTTTGTGTTAACATTTGCATTGTCATTTTGTAAAATCAATTTTATTTCAGATTTCTTACATTTACATTCTTCGTTTTGTTTCATTTCTGTTAGAAATCTTAGAGGAGTAATCGAAATGGAAAGCTAATTCAGGATGGATATTTGACTTTCTTCACCCTAAAACCTATGCTTTTTTAACATTGCTCTTTCTTTCTGCTACTTCCATTTTTTCCCATAAAAGAACAATACAGAAATTGTAGGCTGGCTTGGTAACCCTTTGGTTTTTGAAAATTAAGCCTATAAACATTATTTTCAACTATTAGTTTATATGTTTTGTTATCTAGATTTAGGAGTTTTTTTAAAATCAAAGCAAAATTTTGAAAAACATAAAAAATAGTTTTCAAAAATTAGTTATTGTTTTTTGAAATTGGCTACAAATTCAAAGGAAATATGAAAGCCATTAGTGAGAAAACAAGCACAATTTTTAAAAATAAAAAAATTAAATAGTTACTAAACGGACCGTAATCTTTTCCATTCATATCTTTTCGTTTCTCTTTCCACTGTTTGACATCAAAATGGAGGAGATACGGTATGGATGAACTTTCTCTTTCGTGATGAAACGAAAGAGTCTTGTGGCACGATTGTTTTTCTGCTATTTTATGGGAGTGTAGCTCGAGAGGAATGGTAGAGATTCTAGTCAATGGAAGAAGTTTGGGAGGAGGTGAGGTTTAATGCATCATTACATACGTTCTTTAATCGGACCTTCAATAACTTTCGACTTTGTGCAACTCTTTTGGATTGGAATCCGTTTTCGAAGTTTGTTGTGGACTCATTTTATGGTCTTGTTTTTTGTATGCCCTTCTACGTTAAGCACATACTGAAGTTAATAGAGAGAATTGTAGTTCTTCCATTAACGTCTTCTTCATTTCTGAAAACAGGGGCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGATTCTGCCATGTCCAAATCATAGAAGAAGCTTTCGGGGGATGTTAACTTTCTTCAGGCTTTGAACGCATTTTTTTCCTTTTTGTTCTTGTACACACGAAAAGGTATTTTCTTGTCCCCTTTTCCTCTGATATCCTAAAGTGTTATTAGCGGATGATATCTTCAAGAATAATCTTTTATTCTTTCGGAACTTGCATTCTGTTATGGCTTCCCTGTACTTTCTTCCCAAGTTAGGAGCTTCCATTATTATTTAGCTTCTCTAATGGCAGTTAATAGCATGTGGAAATGTTCAGAGAGGAAGAGAGAACTAGTTTTAAAAGATCATCTTTTAAATCTTTTGAGTTCCCTGATACGGAGATTGGAATGTAATCAGGATTACTTAAAATCATGGAAATGTTAGAATGCGTGAGAGCAAAATGGAAATGGAATCATGAAGCGTGAAAATAGGTAGAAAAGAGAATTGGGATGAAAACTGTGGGAAAAGAATAAGTTTGGTATTACAAATCAGACCCAAAACGCTCCATCCAAACATGGATTTTAGATTACATTACGACCCAATCTCATTTCAAACTTGATCCTCAAACAGCTCCGGAAAGTT

mRNA sequence

AAAAGGTATGACTACGGTATTTTCGTGTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCCATCCGCAGAACTCAAAGAGCGCCTCAAAACTCCTCCATCGCACCAACAATGGCGACCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCATTTCTTCCCCCAACCACCAAAATTCCAAGCTCTTCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTTGCTACTCTTCCAGTCCTCTCTTTCACCGGAGAAAAGGTCGGCGAAACCTACCTCGATCTCAAATCCGCTCCACCTGAAACCGCCCGCGCCGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACTGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTAGTGGAGGATTTTGGGGACAAGTTCGAAAAGCCGAAAACTAAAGAGTTCATCGCGGCATTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCGTTGTTCTTAATGACGGAGGTTTCTGATACTGTGCGGCTATCTAGCCGTAATATCGGTACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGACAAGTTGGTTTTGACGCCGGCGGCAGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGGGCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGATTCTGCCATGTCCAAATCATAGAAGAAGCTTTCGGGGGATGTTAACTTTCTTCAGGCTTTGAACGCATTTTTTTCCTTTTTGTTCTTGTACACACGAAAAGGTATTTTCTTGTCCCCTTTTCCTCTGATATCCTAAAGTGTTATTAGCGGATGATATCTTCAAGAATAATCTTTTATTCTTTCGGAACTTGCATTCTGTTATGGCTTCCCTGTACTTTCTTCCCAAGTTAGGAGCTTCCATTATTATTTAGCTTCTCTAATGGCAGTTAATAGCATGTGGAAATGTTCAGAGAGGAAGAGAGAACTAGTTTTAAAAGATCATCTTTTAAATCTTTTGAGTTCCCTGATACGGAGATTGGAATGTAATCAGGATTACTTAAAATCATGGAAATGTTAGAATGCGTGAGAGCAAAATGGAAATGGAATCATGAAGCGTGAAAATAGGTAGAAAAGAGAATTGGGATGAAAACTGTGGGAAAAGAATAAGTTTGGTATTACAAATCAGACCCAAAACGCTCCATCCAAACATGGATTTTAGATTACATTACGACCCAATCTCATTTCAAACTTGATCCTCAAACAGCTCCGGAAAGTT

Coding sequence (CDS)

ATGGCGACCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCATTTCTTCCCCCAACCACCAAAATTCCAAGCTCTTCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTTGCTACTCTTCCAGTCCTCTCTTTCACCGGAGAAAAGGTCGGCGAAACCTACCTCGATCTCAAATCCGCTCCACCTGAAACCGCCCGCGCCGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACTGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTAGTGGAGGATTTTGGGGACAAGTTCGAAAAGCCGAAAACTAAAGAGTTCATCGCGGCATTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCGTTGTTCTTAATGACGGAGGTTTCTGATACTGTGCGGCTATCTAGCCGTAATATCGGTACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGACAAGTTGGTTTTGACGCCGGCGGCAGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGGGCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGA

Protein sequence

MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAEAGEDSDAAE
Homology
[Close]
BLAST of Lsi10G014180 vs. Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2)

HSP 1 Score: 365.9 bits (938), Expect = 3.9e-100
Identity = 192/279 (68.82%), Postives = 237/279 (84.95%), Query Frame = 1 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAE 278
           L++DKLVLTPAAVE+LN RYG++  EEE++  ++ EG+E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSE 280

[Close]
BLAST of Lsi10G014180 vs. Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-97
Identity = 193/281 (68.68%), Postives = 235/281 (83.63%), Query Frame = 1 

Query: 8   SSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGET 67
           +SLSFF+SS+F+S+PN Q+SK      P  L       +I SE+AT+P+LSF G +VG T
Sbjct: 3   ASLSFFSSSIFLSNPNIQSSKHLLFRSPKQLSVAAIA-TIRSEVATIPILSFDGAEVGST 62

Query: 68  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGS 127
            L+LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS
Sbjct: 63  TLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGS 122

Query: 128 MRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTK 187
            RTPLRPGGGVVFGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTK
Sbjct: 123 NRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTK 182

Query: 188 EFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLT 247
           EFI  ++RWG+DPKEKSLFLMT+VSD V LSSRNIGTLK+LTPRTLNLFDILDS+KLVLT
Sbjct: 183 EFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLT 242

Query: 248 PAAVEYLNERYG--INYEEEEEEGGEDEEGAEAGEDSDAAE 287
            +AV++LNERYG    +E+EEE+  ED +G EA E ++++E
Sbjct: 243 KSAVDFLNERYGDENEWEDEEEDDQEDNDGGEAEESTESSE 282

[Close]
BLAST of Lsi10G014180 vs. Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.7e-90
Identity = 181/292 (61.99%), Postives = 227/292 (77.74%), Query Frame = 1 

Query: 1   MATSTTPS-SLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSF 60
           MATST+ S SLSFF+SS+F S   + +SK       +S    +  LSI SEL  LP+L+F
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  TGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 120
           +GEKVGET+L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGGRKPY QKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 180
           TG+ARRGS  +PLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F +
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDIL 240
            FEKPKTK+FIAA++RWG+DP EKSLF + ++ + V  S RNI TLKLLTPR+LNLFD+L
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 DSDKLVLTPAAVEYLNERYGIN-------YEEEEEEGGEDEEGAEAGEDSDA 285
           +++KLV T   ++YLN+RYG++        EEEEEEG E ++G E G    A
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPA 292

[Close]
BLAST of Lsi10G014180 vs. Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-56
Identity = 111/204 (54.41%), Postives = 149/204 (73.04%), Query Frame = 1 

Query: 56  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 115
           V  + G   GE  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGGRKP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 116 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 175
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 176 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNL 235
           DF D   +PKTKE + AL+RWGI+P++K L L  ++++TV LS+RN+ TLKLL    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 236 FDILDSDKLVLTPAAVEYLNERYG 260
           FD+L +D++V T  A+  + E YG
Sbjct: 186 FDLLYADRIVATTGAIAKIQEVYG 209

[Close]
BLAST of Lsi10G014180 vs. Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.6e-55
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 1 

Query: 56  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 115
           +  + G +VGET L+L+ A  E A  +VHRA+     N R+GTAST TRAEV GGGRKP+
Sbjct: 6   IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPW 65

Query: 116 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 175
           +QK TG+AR GS R+PL  GGGV+FGPKPRD+SIK+N KE+RLA+ TA+ S + + IVVE
Sbjct: 66  RQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRLALRTALISRSDSLIVVE 125

Query: 176 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNL 235
           DF DK  +PKTKE  AA+ RWG+ P +K L ++ +  DT+ LS+RNI T+KL+   +LN+
Sbjct: 126 DFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNV 185

Query: 236 FDILDSDKLVLTPAAVEYLNERYG 260
           FD+L++D +V T  A+  + E YG
Sbjct: 186 FDLLNADWIVATVEALGKIQEVYG 209

[Close]
BLAST of Lsi10G014180 vs. TrEMBL
Match: A0A0A0KFB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187950 PE=3 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 7.7e-135
Identity = 262/288 (90.97%), Postives = 273/288 (94.79%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MATS +PSSLSFFTSSVF+SSP+HQN  LF N KPNSLKPQTK LSISSELATLPVLSFT
Sbjct: 155 MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSLKPQTKTLSISSELATLPVLSFT 214

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G+KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPY+QKKT
Sbjct: 215 GQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQKKT 274

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEK+LAISTAVASAAVNTIVVE+FGDK
Sbjct: 275 GRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAVNTIVVEEFGDK 334

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 335 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 394

Query: 241 SDKLVLTPAAVEYLNERYGINYE---EEEEEGGEDEEGAEAGEDSDAA 286
           SDKLVLTP AV+YLNERYGINYE   EE EE  E+EEG EAGEDSDAA
Sbjct: 395 SDKLVLTPTAVDYLNERYGINYEEGIEEGEEEEEEEEGVEAGEDSDAA 442

[Close]
BLAST of Lsi10G014180 vs. TrEMBL
Match: W9S021_9ROSA (50S ribosomal protein L4 OS=Morus notabilis GN=L484_022055 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 3.7e-113
Identity = 226/278 (81.29%), Postives = 247/278 (88.85%), Query Frame = 1 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWK-PNSLK-PQTKPLSISSELATLPVLSF 61
           AT+T PSSLSFF+SSVF +S   Q  K F ++K PNSLK P  KPLSI SELATLPVLSF
Sbjct: 5   ATTTAPSSLSFFSSSVFFTSSQRQTLKPFLSFKTPNSLKSPTPKPLSIISELATLPVLSF 64

Query: 62  TGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 121
           TGEKVGET+LDLKSAPPETARAVVHR IITD QNKRRGTASTLTR EV GGGRKPY QKK
Sbjct: 65  TGEKVGETFLDLKSAPPETARAVVHRGIITDLQNKRRGTASTLTRGEVRGGGRKPYPQKK 124

Query: 122 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 181
           TG+AR GS+R+PLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD
Sbjct: 125 TGRARSGSIRSPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 184

Query: 182 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDIL 241
           KFE+PKTKEFIAALKRWGIDPKEKS FLM +V++ + LSSRNIGTLK+LTPRTLNLFDIL
Sbjct: 185 KFERPKTKEFIAALKRWGIDPKEKSTFLMMDVTENLVLSSRNIGTLKILTPRTLNLFDIL 244

Query: 242 DSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAE 278
           ++DKLVLTP AV YLNERYG+++E E EE  +DEE AE
Sbjct: 245 NADKLVLTPGAVYYLNERYGVDFEGESEE--DDEESAE 280

[Close]
BLAST of Lsi10G014180 vs. TrEMBL
Match: M5WJ64_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009351mg PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.5e-109
Identity = 222/299 (74.25%), Postives = 248/299 (82.94%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA S TP SLSFFTSS+F++S +H   K      PN+     KPL+ISSELATLPVLSFT
Sbjct: 1   MAASATPLSLSFFTSSIFLTSSSH---KTLSTLIPNNSFKTPKPLTISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G+KVGET+LDLK+A P+TARAVVHRAIITD QNKRRGTASTLTRAEV GGGRKPY QKKT
Sbjct: 61  GDKVGETFLDLKAALPDTARAVVHRAIITDLQNKRRGTASTLTRAEVRGGGRKPYPQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+AR+GS RTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDF D+
Sbjct: 121 GRARQGSTRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAENTIVVEDFSDE 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAA+KRWG+DP EK+ FLM EV+D VRLSSRNIGTLK+LTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAAMKRWGLDPNEKTTFLMREVADNVRLSSRNIGTLKMLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINYE-------------EEEEEGGEDEEGAEAGEDSDAAE 287
           +DKL+LTP  V+YLN RYG+NYE             EEE EGG + +GA + E SDAAE
Sbjct: 241 ADKLILTPEIVDYLNARYGLNYEGDDEDEEGAEEQDEEEGEGGSEVQGAVSEESSDAAE 296

[Close]
BLAST of Lsi10G014180 vs. TrEMBL
Match: A0A0D2RRA8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G006900 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.2e-105
Identity = 214/291 (73.54%), Postives = 245/291 (84.19%), Query Frame = 1 

Query: 1   MATS-TTPSSLSFFTSSVFISSPNHQ-NSKLFCNWKPNSLKPQTKPLSISSELATLPVLS 60
           MATS TT SSLSFF+SS+F+SSP+ + ++ L  ++KP+S       LSISS+L+TLP+LS
Sbjct: 1   MATSATTLSSLSFFSSSLFLSSPSAKLSTSLSFSFKPSS----NPSLSISSQLSTLPILS 60

Query: 61  FTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQK 120
           FTGEK+GETYLDLKSAPPETARAVVHRAIITD QNKRRGTASTLTR EV GGG+KPY QK
Sbjct: 61  FTGEKIGETYLDLKSAPPETARAVVHRAIITDLQNKRRGTASTLTRGEVRGGGKKPYPQK 120

Query: 121 KTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFG 180
           KTG+ARRGS RTPLRPGGGV+FGPKPRDWS+KIN+KEKRLAISTA++SAA NTIVVEDFG
Sbjct: 121 KTGRARRGSTRTPLRPGGGVIFGPKPRDWSVKINKKEKRLAISTALSSAAENTIVVEDFG 180

Query: 181 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 240
           DKFEKPKTKEFI ALKRWG+DPK+KS+FLM EV +TV  SSRNIGTL++LTPRTLNLFDI
Sbjct: 181 DKFEKPKTKEFIEALKRWGLDPKQKSMFLMMEVPETVNKSSRNIGTLRMLTPRTLNLFDI 240

Query: 241 LDSDKLVLTPAAVEYLNERYGIN-----------YEEEEEEGGEDEEGAEA 279
           L+ D LVLTP  V+YLN RYG +           YEEEEE+ GEDE G  A
Sbjct: 241 LNCDNLVLTPDTVDYLNGRYGEDYEGDTEDDNEEYEEEEEQSGEDENGDAA 287

[Close]
BLAST of Lsi10G014180 vs. TrEMBL
Match: F6GUU0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06140 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.6e-103
Identity = 206/286 (72.03%), Postives = 238/286 (83.22%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAT+ T  S+SFF+SS+F SS + QN      +KPNS     KPLS+ S+L  +P+LSFT
Sbjct: 1   MATTATSPSISFFSSSIFGSS-SRQNPNFLSTFKPNSFLKPLKPLSVRSDLVAIPILSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET L+LKSAP +TARAVVHR IITD QN+RRGTASTLTR EV GGG+KPY QKKT
Sbjct: 61  GEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGGGKKPYPQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGS RTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTA++SAAVNTIVVEDF DK
Sbjct: 121 GRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAAVNTIVVEDFSDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           F+KPKTKEFI+A+KRWGIDPKEKS+FLMTEVSD VRLSSRNIGTLK+LTPRTLNLFDIL+
Sbjct: 181 FDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGI----NYEEEEEEGGEDEEGAEAGEDS 283
           SDKLVLT   V+YLN  Y +       ++EEE  + +EG EA +++
Sbjct: 241 SDKLVLTQETVDYLNRMYAVEAIGEEADDEEEYEDGDEGLEAADEN 285

[Close]
BLAST of Lsi10G014180 vs. TAIR10
Match: AT1G07320.1 (AT1G07320.1 ribosomal protein L4)

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-101
Identity = 192/279 (68.82%), Postives = 237/279 (84.95%), Query Frame = 1 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAE 278
           L++DKLVLTPAAVE+LN RYG++  EEE++  ++ EG+E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSE 280

[Close]
BLAST of Lsi10G014180 vs. TAIR10
Match: AT2G20060.1 (AT2G20060.1 Ribosomal protein L4/L1 family)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-19
Identity = 63/206 (30.58%), Postives = 111/206 (53.88%), Query Frame = 1 

Query: 54  LPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRK 113
           +PV +F  E+ G   L          + ++H  +      +++GT ST T +EVSG GRK
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 114 PYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV--NT 173
           P+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL +  A+ + A     
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 174 IVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPR 233
           +V +D G      KTK  +    +   + K+  +     + + ++L+++N+  + ++   
Sbjct: 211 LVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 270

Query: 234 TLNLFDILDSDKLVLTPAAVEYLNER 258
            LN++ IL  D L+++  AV  + ER
Sbjct: 271 GLNVYSILLHDTLLMSRDAVNKIVER 293

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: gi|659128117|ref|XP_008464054.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 501.5 bits (1290), Expect = 9.6e-139
Identity = 270/291 (92.78%), Postives = 276/291 (94.85%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF+SSP HQN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-----EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY     EEEEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: gi|659128115|ref|XP_008464053.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 4.8e-138
Identity = 270/297 (90.91%), Postives = 276/297 (92.93%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF+SSP HQN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-----------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY           EEEEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEEEGVEAGEDSDAAE 297

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: gi|449450794|ref|XP_004143147.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic [Cucumis sativus])

HSP 1 Score: 488.0 bits (1255), Expect = 1.1e-134
Identity = 262/288 (90.97%), Postives = 273/288 (94.79%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MATS +PSSLSFFTSSVF+SSP+HQN  LF N KPNSLKPQTK LSISSELATLPVLSFT
Sbjct: 1   MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSLKPQTKTLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G+KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPY+QKKT
Sbjct: 61  GQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEK+LAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYE---EEEEEGGEDEEGAEAGEDSDAA 286
           SDKLVLTP AV+YLNERYGINYE   EE EE  E+EEG EAGEDSDAA
Sbjct: 241 SDKLVLTPTAVDYLNERYGINYEEGIEEGEEEEEEEEGVEAGEDSDAA 288

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: gi|700191898|gb|KGN47102.1| (hypothetical protein Csa_6G187950 [Cucumis sativus])

HSP 1 Score: 488.0 bits (1255), Expect = 1.1e-134
Identity = 262/288 (90.97%), Postives = 273/288 (94.79%), Query Frame = 1 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MATS +PSSLSFFTSSVF+SSP+HQN  LF N KPNSLKPQTK LSISSELATLPVLSFT
Sbjct: 155 MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSLKPQTKTLSISSELATLPVLSFT 214

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G+KVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPY+QKKT
Sbjct: 215 GQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQKKT 274

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEK+LAISTAVASAAVNTIVVE+FGDK
Sbjct: 275 GRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAVNTIVVEEFGDK 334

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 335 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 394

Query: 241 SDKLVLTPAAVEYLNERYGINYE---EEEEEGGEDEEGAEAGEDSDAA 286
           SDKLVLTP AV+YLNERYGINYE   EE EE  E+EEG EAGEDSDAA
Sbjct: 395 SDKLVLTPTAVDYLNERYGINYEEGIEEGEEEEEEEEGVEAGEDSDAA 442

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: gi|703130657|ref|XP_010104677.1| (50S ribosomal protein L4 [Morus notabilis])

HSP 1 Score: 416.0 bits (1068), Expect = 5.3e-113
Identity = 226/278 (81.29%), Postives = 247/278 (88.85%), Query Frame = 1 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWK-PNSLK-PQTKPLSISSELATLPVLSF 61
           AT+T PSSLSFF+SSVF +S   Q  K F ++K PNSLK P  KPLSI SELATLPVLSF
Sbjct: 5   ATTTAPSSLSFFSSSVFFTSSQRQTLKPFLSFKTPNSLKSPTPKPLSIISELATLPVLSF 64

Query: 62  TGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 121
           TGEKVGET+LDLKSAPPETARAVVHR IITD QNKRRGTASTLTR EV GGGRKPY QKK
Sbjct: 65  TGEKVGETFLDLKSAPPETARAVVHRGIITDLQNKRRGTASTLTRGEVRGGGRKPYPQKK 124

Query: 122 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 181
           TG+AR GS+R+PLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD
Sbjct: 125 TGRARSGSIRSPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 184

Query: 182 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDIL 241
           KFE+PKTKEFIAALKRWGIDPKEKS FLM +V++ + LSSRNIGTLK+LTPRTLNLFDIL
Sbjct: 185 KFERPKTKEFIAALKRWGIDPKEKSTFLMMDVTENLVLSSRNIGTLKILTPRTLNLFDIL 244

Query: 242 DSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAE 278
           ++DKLVLTP AV YLNERYG+++E E EE  +DEE AE
Sbjct: 245 NADKLVLTPGAVYYLNERYGVDFEGESEE--DDEESAE 280

The following BLAST results are available for this feature:
BLAST of Lsi10G014180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK4_ARATH3.9e-10068.8250S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=... [more]
RK4_TOBAC1.1e-9768.6850S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1[more]
RK4_SPIOL1.7e-9061.9950S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1[more]
RL4_THEEB1.6e-5654.4150S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD ... [more]
RL4_CYAP48.6e-5553.4350S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpl... [more]
BLAST of Lsi10G014180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFB8_CUCSA7.7e-13590.97Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187950 PE=3 SV=1[more]
W9S021_9ROSA3.7e-11381.2950S ribosomal protein L4 OS=Morus notabilis GN=L484_022055 PE=3 SV=1[more]
M5WJ64_PRUPE1.5e-10974.25Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009351mg PE=3 SV=1[more]
A0A0D2RRA8_GOSRA2.2e-10573.54Uncharacterized protein OS=Gossypium raimondii GN=B456_004G006900 PE=3 SV=1[more]
F6GUU0_VITVI1.6e-10372.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06140 PE=3 SV=... [more]
BLAST of Lsi10G014180 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07320.12.2e-10168.82 ribosomal protein L4[more]
AT2G20060.12.8e-1930.58 Ribosomal protein L4/L1 family[more]
BLAST of Lsi10G014180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128117|ref|XP_008464054.1|9.6e-13992.78PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo][more]
gi|659128115|ref|XP_008464053.1|4.8e-13890.91PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo][more]
gi|449450794|ref|XP_004143147.1|1.1e-13490.97PREDICTED: 50S ribosomal protein L4, chloroplastic [Cucumis sativus][more]
gi|700191898|gb|KGN47102.1|1.1e-13490.97hypothetical protein Csa_6G187950 [Cucumis sativus][more]
gi|703130657|ref|XP_010104677.1|5.3e-11381.2950S ribosomal protein L4 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023574Ribosomal_L4_dom_sf
IPR013005Ribosomal_uL4/L1e
IPR002136Ribosomal_L4/L1e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G014180.1Lsi10G014180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 78..257
score: 8.8
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 59..259
score: 29
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 1..281
score: 1.3E
IPR01300550S ribosomal protein uL4TIGRFAMsTIGR03953TIGR03953coord: 77..256
score: 3.0
IPR023574Ribosomal protein L4 domainGENE3DG3DSA:3.40.1370.10coord: 108..258
score: 2.3
IPR023574Ribosomal protein L4 domainunknownSSF52166Ribosomal protein L4coord: 53..259
score: 4.06
NoneNo IPR availablePANTHERPTHR10746:SF1050S RIBOSOMAL PROTEIN L4, CHLOROPLASTICcoord: 1..281
score: 1.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G014180Csa6G187950Cucumber (Chinese Long) v2culsiB413
Lsi10G014180CSPI06G13990Wild cucumber (PI 183967)cpilsiB416
Lsi10G014180Cucsa.139100Cucumber (Gy14) v1cgylsiB222
Lsi10G014180CmaCh20G003600Cucurbita maxima (Rimu)cmalsiB506
Lsi10G014180CmaCh02G007600Cucurbita maxima (Rimu)cmalsiB547
Lsi10G014180CmoCh20G003890Cucurbita moschata (Rifu)cmolsiB490
Lsi10G014180CmoCh02G007640Cucurbita moschata (Rifu)cmolsiB532
Lsi10G014180Cla013346Watermelon (97103) v1lsiwmB078
Lsi10G014180MELO3C025869Melon (DHL92) v3.5.1lsimeB044
Lsi10G014180ClCG02G019690Watermelon (Charleston Gray)lsiwcgB054
Lsi10G014180MELO3C025869.2Melon (DHL92) v3.6.1lsimedB046
Lsi10G014180Bhi10G000615Wax gourdlsiwgoB068
Lsi10G014180Cp4.1LG05g09600Cucurbita pepo (Zucchini)cpelsiB588
Lsi10G014180Cp4.1LG16g06520Cucurbita pepo (Zucchini)cpelsiB219
Lsi10G014180CsGy6G013870Cucumber (Gy14) v2cgyblsiB378
Lsi10G014180Carg03353Silver-seed gourdcarlsiB303
Lsi10G014180Carg23841Silver-seed gourdcarlsiB469
Lsi10G014180CsaV3_6G016380Cucumber (Chinese Long) v3cuclsiB438
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G014180Wax gourdlsiwgoB096
Lsi10G014180Cucumber (Gy14) v1cgylsiB292
Lsi10G014180Cucurbita maxima (Rimu)cmalsiB196
Lsi10G014180Cucurbita maxima (Rimu)cmalsiB632
Lsi10G014180Cucurbita maxima (Rimu)cmalsiB745
Lsi10G014180Cucurbita moschata (Rifu)cmolsiB186
Lsi10G014180Cucurbita moschata (Rifu)cmolsiB738
Lsi10G014180Cucurbita pepo (Zucchini)cpelsiB318
Lsi10G014180Cucurbita pepo (Zucchini)cpelsiB412
Lsi10G014180Cucurbita pepo (Zucchini)cpelsiB487
Lsi10G014180Cucurbita pepo (Zucchini)cpelsiB700
Lsi10G014180Wild cucumber (PI 183967)cpilsiB335
Lsi10G014180Cucumber (Chinese Long) v2culsiB335
Lsi10G014180Melon (DHL92) v3.5.1lsimeB071
Lsi10G014180Watermelon (Charleston Gray)lsiwcgB071
Lsi10G014180Watermelon (97103) v1lsiwmB049
Lsi10G014180Watermelon (97103) v1lsiwmB056
Lsi10G014180Watermelon (97103) v1lsiwmB057
Lsi10G014180Cucumber (Gy14) v2cgyblsiB002
Lsi10G014180Silver-seed gourdcarlsiB137
Lsi10G014180Silver-seed gourdcarlsiB348
Lsi10G014180Silver-seed gourdcarlsiB910
Lsi10G014180Cucumber (Chinese Long) v3cuclsiB359
Lsi10G014180Watermelon (97103) v2lsiwmbB052
Lsi10G014180Watermelon (97103) v2lsiwmbB069