Cp4.1LG16g06520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g06520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description50S ribosomal protein L4
LocationCp4.1LG16 : 6885398 .. 6888232 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTGAAAAAGGAAAGAAGGTCATATTTTCGTCTTTGCCACTGATCTCAGTTACAGTGGATAACGGAAACTCAAAGAGCGCCTCAAAGCTCCTCCATTGCACCAACAATGGCGACCTTTCCGACGCCATTGTCGCTCTCTTTCTTTTCTTCGTCGATCTTCCTTTCCTCCACCAACGATAATTTGAAGCTATTCGGCAATTGGAAACCTAACTCCCGTATACCCCAAAACAAGCCCTTATCGATTTCCTCACAGCTCGCTACCCTTCCAGTCCTCTCTTTCGCCGGAGAAGAGGTCGGCAAGACCTACCTCGACCTCAAATCCGCTCCACCGGAAACCGCCCGCGCCGTCGTTCACCGAGCTATTATCACCGACCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACTAGAGCTGAGGTTAGTGGAGGCGGTAGGAAACCCTACCAGCAGAAGAAAACCGGTAAGGCCCGTCGCGGTTCGATGCGTACTCCTCTACGACCTGGCGGAGGTGTGATTTTCGGGCCGAAACCTAGAGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAAGATTTCGGCGATAAGTTCGAGAAGCCGAAAACTAAAGAGTTCATTGCTGCGCTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCACTGTTCTTAATGACGGAGGTTTCTGATAACGTACGATTATCTAGCCGTAACGTCGGAACGTTGAAATTGTTGACGCCGAGAACGCTGAATTTGTTCGATATTTTGAATTCCGATAAGTTAGTCTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAAACAATTACGAAGAAGGAATCGCAGACGAGGAAGAAGAAGACGAAGAAGGTTGATTTTCTTACCTTTCTCCATTTCAATTGTTCAATTATAGAAATCAAGAACCACCATTATCGTTCCATACTTGAGTTTTGCCTAATTCAACATTCAAATCACATTAGAATTATGCTATGAATTCTGGTTCTGCATCTGTTAACATGGCAAATGCTGGCTTAGGCAATAGTCTGCTTGCTTCCAAATGGGTTCTGCATCATCATTTTGTTGAATCGATTTTCATTCAGATTTCTTGTATTCTCTGTTTTGTTTCATTTCTGTCAGAAATCTTAGAGGAGTAATCAAAATGGAAAGCTTATTCAGGATTGATATTGACTTTCTTCACTCTAAAACCTATGGTTTTCTTAACATTGCTCTTTCTTGCTGCTGCTTCCATTGTTTCACACAGAAACTAATGTCTAGAGTGAGCAATTGTAATTCTTCCATTAATTCCTTCTACTGTTTCACATCAAAATGGAGAAGCTCTTGATGAACTCTCTCTTGGAAGTGTGGCTCGAGAGAAATAGTAGAATTTTTAGGGGTTGGAGAAGTCAATGGAGGATGTGTGGGAGGTGGTGAGGGCAACATATGCTCAAACCTCTAGCAAAACCAAGTCCACCACTAGCCGATATTGTCCTCTTTGTGTTTTTCCCTTTCAGGCTTCCCCTCAAGGTTTCAAAGAAACGTTAAGGAGAGACTTTCACACCATGTGGGATCTCACCCTTATAAGCAATGTTTTGTTCCCCTCCCACCGATGTGGGATCTCACAATCCACCCCCCTTGTCCAGCCTCTTCGCTGGCACATCGCCCGGTGTCTAGCTCTAATACCATTTGTAACAGCCAAACCCCACCGCACCGCTAGCAGATATTGTCCTCTTTGGATTTTTTCCTTTCGGTCTTTCCCTCAAGGTTTTTAAACGCGTTGGTTAGGAAGAGTTTTCCAGACCCTTTTAATGAATGTTTGTTCCCCTCTCCAACCATTGTGGGATCTCACATCGTGTCTTTCTTTTTTCGGATTGGAATCCGTTCTTGGATCTTGTTGTGAATTTCTTTTATGGGCTTGCTTTTTGTAGAAATCTCAGTTTCTTACTACAAAAACAGAACACACCTACTGAAGTTAATAGGGAGAGAGATTGAAGTTCTTCCATTAACATCTTCTTCACTTTTGAAAACAGGGCTGGAGGAGGTAGGTGAGGATTCGGACGCAGCATAATGAATCTGCCATGTGCAAATCATGAAAGGAGCTTACAGGGTATGTTAACTTTCAAGCTTGAACGTATTCTTTTTTTGTTCTTATACACACACAAAGGTATCTTCTTGTCCTTTTATCCTCCGATATCCTAAAGTGTTATTAGCTGATGATCTCTTCAACAACAATCTTTTATTCTTTTGGAACTTGCATTCTGTTTAGGCTTCCCTCTACTTTCTTCCTAAGTTAGGAGCTTCCATTAGTATTCTGAGTCTCCTATGGCACTTCCTTTGTCCATAACATATGAAAACGTTCCGAGAGAAAGAGAACGAGTTTGCAGAAGATGATACTTAAAATGTTTTGAGTTCCTTGAGAGTCTTCCTAAAAACGGCCCCTTTTACGGATGTTTTTAGTTCAACGAGTGAGGTTGAGAGATTCGAACTTTTGACATCTTTGGTCCATAATGTATGTCTAAATCGTTTGAGCTATGATCAGATTGGCTAAAGTTGAAGACGGGAGTTGCCCGTAAATCTAAGACATGTAGCTCAAAGATTGTCCGACCCTTTATAAACTAGGAAAAATGTGGCTTATAATAGAGTCATGCTTAAATTTTTAGATGATAACCTATGTCTTATTAACGGAGATATGCTTCGTTTGAAAAAACCGTCCCATGTATTTGACTATTTCTAGAAAGGTTTGTTTTTCTATATCTTAAGATTGATAACAACCAATAA

mRNA sequence

TGGTGAAAAAGGAAAGAAGGTCATATTTTCGTCTTTGCCACTGATCTCAGTTACAGTGGATAACGGAAACTCAAAGAGCGCCTCAAAGCTCCTCCATTGCACCAACAATGGCGACCTTTCCGACGCCATTGTCGCTCTCTTTCTTTTCTTCGTCGATCTTCCTTTCCTCCACCAACGATAATTTGAAGCTATTCGGCAATTGGAAACCTAACTCCCGTATACCCCAAAACAAGCCCTTATCGATTTCCTCACAGCTCGCTACCCTTCCAGTCCTCTCTTTCGCCGGAGAAGAGGTCGGCAAGACCTACCTCGACCTCAAATCCGCTCCACCGGAAACCGCCCGCGCCGTCGTTCACCGAGCTATTATCACCGACCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACTAGAGCTGAGGTTAGTGGAGGCGGTAGGAAACCCTACCAGCAGAAGAAAACCGGTAAGGCCCGTCGCGGTTCGATGCGTACTCCTCTACGACCTGGCGGAGGTGTGATTTTCGGGCCGAAACCTAGAGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAAGATTTCGGCGATAAGTTCGAGAAGCCGAAAACTAAAGAGTTCATTGCTGCGCTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCACTGTTCTTAATGACGGAGGTTTCTGATAACGTACGATTATCTAGCCGTAACGTCGGAACGTTGAAATTGTTGACGCCGAGAACGCTGAATTTGTTCGATATTTTGAATTCCGATAAGTTAGTCTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAAACAATTACGAAGAAGGAATCGCAGACGAGGAAGAAGAAGACGAAGAAGGGCTGGAGGAGATTGATAACAACCAATAA

Coding sequence (CDS)

ATGGCGACCTTTCCGACGCCATTGTCGCTCTCTTTCTTTTCTTCGTCGATCTTCCTTTCCTCCACCAACGATAATTTGAAGCTATTCGGCAATTGGAAACCTAACTCCCGTATACCCCAAAACAAGCCCTTATCGATTTCCTCACAGCTCGCTACCCTTCCAGTCCTCTCTTTCGCCGGAGAAGAGGTCGGCAAGACCTACCTCGACCTCAAATCCGCTCCACCGGAAACCGCCCGCGCCGTCGTTCACCGAGCTATTATCACCGACCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACTAGAGCTGAGGTTAGTGGAGGCGGTAGGAAACCCTACCAGCAGAAGAAAACCGGTAAGGCCCGTCGCGGTTCGATGCGTACTCCTCTACGACCTGGCGGAGGTGTGATTTTCGGGCCGAAACCTAGAGATTGGTCCATTAAGATCAACAGAAAGGAGAAGAGATTGGCAATATCGACGGCGGTGGCTAGCGCGGCGGTAAATACGATAGTGGTGGAAGATTTCGGCGATAAGTTCGAGAAGCCGAAAACTAAAGAGTTCATTGCTGCGCTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCACTGTTCTTAATGACGGAGGTTTCTGATAACGTACGATTATCTAGCCGTAACGTCGGAACGTTGAAATTGTTGACGCCGAGAACGCTGAATTTGTTCGATATTTTGAATTCCGATAAGTTAGTCTTGACGCCGGCGGCGGTAGATTATCTGAATGAGAGATATGGAAACAATTACGAAGAAGGAATCGCAGACGAGGAAGAAGAAGACGAAGAAGGGCTGGAGGAGATTGATAACAACCAATAA

Protein sequence

MATFPTPLSLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAGEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNSDKLVLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEEIDNNQ
Homology
[Close]
BLAST of Cp4.1LG16g06520 vs. Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2)

HSP 1 Score: 359.8 bits (922), Expect = 2.8e-98
Identity = 190/275 (69.09%), Postives = 231/275 (84.00%), Query Frame = 1 

Query: 7   PLSLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAGEEVGKT 66
           P SLSFFSSS+FLSS++   K + +         +KPLS+SSQLATLP+LSF GE+VG+T
Sbjct: 8   PNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGEKVGET 67

Query: 67  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGS 126
           YLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG ARRGS
Sbjct: 68  YLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGS 127

Query: 127 MRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGDKFEKP 186
            RTPLRPGGGV+FGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+KFEKP
Sbjct: 128 QRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKP 187

Query: 187 KTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNSDKL 246
           KTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRN+GTL++LTPRTLNLFDILN+DKL
Sbjct: 188 KTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKL 247

Query: 247 VLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEE 279
           VLTPAAV++LN RYG +  E   D++E++ EG EE
Sbjct: 248 VLTPAAVEFLNARYGVDAVEE-EDDDEDETEGSEE 281

[Close]
BLAST of Cp4.1LG16g06520 vs. Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.2e-95
Identity = 185/266 (69.55%), Postives = 223/266 (83.83%), Query Frame = 1 

Query: 9   SLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAGEEVGKTYL 68
           SLSFFSSSIFLS+ N        ++   ++      +I S++AT+P+LSF G EVG T L
Sbjct: 4   SLSFFSSSIFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVATIPILSFDGAEVGSTTL 63

Query: 69  DLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMR 128
           +LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS R
Sbjct: 64  NLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNR 123

Query: 129 TPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEF 188
           TPLRPGGGV+FGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTKEF
Sbjct: 124 TPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTKEF 183

Query: 189 IAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNSDKLVLTPA 248
           I  ++RWG+DPKEKSLFLMT+VSDNV LSSRN+GTLK+LTPRTLNLFDIL+S+KLVLT +
Sbjct: 184 IDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKS 243

Query: 249 AVDYLNERYGNNYEEGIADEEEEDEE 275
           AVD+LNERYG+  E    DEEE+D+E
Sbjct: 244 AVDFLNERYGD--ENEWEDEEEDDQE 267

[Close]
BLAST of Cp4.1LG16g06520 vs. Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.7e-90
Identity = 176/275 (64.00%), Postives = 221/275 (80.36%), Query Frame = 1 

Query: 8   LSLSFFSSSIFLS-STNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAGEEVGKT 67
           LSLSFFSSS+F S S N + K       +S    +  LSI S+L  LP+L+F+GE+VG+T
Sbjct: 9   LSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNFSGEKVGET 68

Query: 68  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGS 127
           +L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGGRKPY QKKTG+ARRGS
Sbjct: 69  FLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGS 128

Query: 128 MRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTK 187
             +PLRPGGGVIFGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F + FEKPKTK
Sbjct: 129 QGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAENFEKPKTK 188

Query: 188 EFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNSDKLVLT 247
           +FIAA++RWG+DP EKSLF + ++ +NV  S RN+ TLKLLTPR+LNLFD+LN++KLV T
Sbjct: 189 DFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFT 248

Query: 248 PAAVDYLNERYGNNYEEGIADEEEEDEEGLEEIDN 282
              + YLN+RYG +  E   +EEEE+EEG EE+D+
Sbjct: 249 EGTIQYLNQRYGVDTLEDEDEEEEEEEEG-EEVDD 282

[Close]
BLAST of Cp4.1LG16g06520 vs. Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.7e-56
Identity = 111/205 (54.15%), Postives = 150/205 (73.17%), Query Frame = 1 

Query: 55  VLSFAGEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 114
           V  + G + G+  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGGRKP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 115 QQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 174
           +QK TG+AR GS+R+PL  GGGVIFGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 175 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNL 234
           DF D   +PKTKE + AL+RWGI+P++K L L  ++++ V LS+RNV TLKLL    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 235 FDILNSDKLVLTPAAVDYLNERYGN 260
           FD+L +D++V T  A+  + E YG+
Sbjct: 186 FDLLYADRIVATTGAIAKIQEVYGD 210

[Close]
BLAST of Cp4.1LG16g06520 vs. Swiss-Prot
Match: RL4_MICAN (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) GN=rplD PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.9e-56
Identity = 107/204 (52.45%), Postives = 152/204 (74.51%), Query Frame = 1 

Query: 55  VLSFAGEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 114
           V ++ GEE G   L+LK+A PETA+ ++HR +++     R+G AS+ TR+EV GGGRKP+
Sbjct: 6   VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPW 65

Query: 115 QQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 174
           +QK TG+AR GS+R+PL  GGGVIFGPKPRD+ +K+NRKEKRLA+ TA+ S A N IVVE
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQADNFIVVE 125

Query: 175 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNL 234
            F ++F +PKTKE  AAL RWG  P+EK L ++TE+ +NV LS RN+  LK++   +LN+
Sbjct: 126 SFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRADSLNV 185

Query: 235 FDILNSDKLVLTPAAVDYLNERYG 259
           +D++ +D+++ T AA+  + E YG
Sbjct: 186 YDVILADRVIATAAALAKIEEVYG 209

[Close]
BLAST of Cp4.1LG16g06520 vs. TrEMBL
Match: A0A0A0KFB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187950 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.9e-125
Identity = 242/280 (86.43%), Postives = 262/280 (93.57%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSS-TNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFA 60
           MAT  +P SLSFF+SS+FLSS ++ NL LF N KPNS  PQ K LSISS+LATLPVLSF 
Sbjct: 155 MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSLKPQTKTLSISSELATLPVLSFT 214

Query: 61  GEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G++VG+TYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPY+QKKT
Sbjct: 215 GQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQKKT 274

Query: 121 GKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGSMRTPLRPGGGV+FGPKPRDWSIKINRKEK+LAISTAVASAAVNTIVVE+FGDK
Sbjct: 275 GRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAVNTIVVEEFGDK 334

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILN 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRN+GTLKLLTPRTLNLFDIL+
Sbjct: 335 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 394

Query: 241 SDKLVLTPAAVDYLNERYGNNYEEGI--ADEEEEDEEGLE 278
           SDKLVLTP AVDYLNERYG NYEEGI   +EEEE+EEG+E
Sbjct: 395 SDKLVLTPTAVDYLNERYGINYEEGIEEGEEEEEEEEGVE 434

[Close]
BLAST of Cp4.1LG16g06520 vs. TrEMBL
Match: M5WJ64_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009351mg PE=3 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.6e-108
Identity = 213/283 (75.27%), Postives = 241/283 (85.16%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAG 60
           MA   TPLSLSFF+SSIFL+S++   K      PN+     KPL+ISS+LATLPVLSF G
Sbjct: 1   MAASATPLSLSFFTSSIFLTSSSH--KTLSTLIPNNSFKTPKPLTISSELATLPVLSFTG 60

Query: 61  EEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120
           ++VG+T+LDLK+A P+TARAVVHRAIITD QNKRRGTASTLTRAEV GGGRKPY QKKTG
Sbjct: 61  DKVGETFLDLKAALPDTARAVVHRAIITDLQNKRRGTASTLTRAEVRGGGRKPYPQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           +AR+GS RTPLRPGGGV+FGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDF D+F
Sbjct: 121 RARQGSTRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAENTIVVEDFSDEF 180

Query: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNS 240
           EKPKTKEFIAA+KRWG+DP EK+ FLM EV+DNVRLSSRN+GTLK+LTPRTLNLFDILN+
Sbjct: 181 EKPKTKEFIAAMKRWGLDPNEKTTFLMREVADNVRLSSRNIGTLKMLTPRTLNLFDILNA 240

Query: 241 DKLVLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEEIDNNQ 284
           DKL+LTP  VDYLN RYG NYE      ++EDEEG EE D  +
Sbjct: 241 DKLILTPEIVDYLNARYGLNYE-----GDDEDEEGAEEQDEEE 276

[Close]
BLAST of Cp4.1LG16g06520 vs. TrEMBL
Match: W9S021_9ROSA (50S ribosomal protein L4 OS=Morus notabilis GN=L484_022055 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 3.6e-108
Identity = 220/287 (76.66%), Postives = 245/287 (85.37%), Query Frame = 1 

Query: 2   ATFPTPLSLSFFSSSIFL-SSTNDNLKLFGNWK-PNS-RIPQNKPLSISSQLATLPVLSF 61
           AT   P SLSFFSSS+F  SS    LK F ++K PNS + P  KPLSI S+LATLPVLSF
Sbjct: 5   ATTTAPSSLSFFSSSVFFTSSQRQTLKPFLSFKTPNSLKSPTPKPLSIISELATLPVLSF 64

Query: 62  AGEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 121
            GE+VG+T+LDLKSAPPETARAVVHR IITD QNKRRGTASTLTR EV GGGRKPY QKK
Sbjct: 65  TGEKVGETFLDLKSAPPETARAVVHRGIITDLQNKRRGTASTLTRGEVRGGGRKPYPQKK 124

Query: 122 TGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 181
           TG+AR GS+R+PLRPGGGV+FGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD
Sbjct: 125 TGRARSGSIRSPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 184

Query: 182 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDIL 241
           KFE+PKTKEFIAALKRWGIDPKEKS FLM +V++N+ LSSRN+GTLK+LTPRTLNLFDIL
Sbjct: 185 KFERPKTKEFIAALKRWGIDPKEKSTFLMMDVTENLVLSSRNIGTLKILTPRTLNLFDIL 244

Query: 242 NSDKLVLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEE---IDNN 283
           N+DKLVLTP AV YLNERYG ++E    + EE+DEE  EE   +D N
Sbjct: 245 NADKLVLTPGAVYYLNERYGVDFE---GESEEDDEESAEEEGTVDEN 288

[Close]
BLAST of Cp4.1LG16g06520 vs. TrEMBL
Match: A0A061GWI6_THECC (50S ribosomal protein L4 isoform 1 OS=Theobroma cacao GN=TCM_041662 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.7e-106
Identity = 204/271 (75.28%), Postives = 236/271 (87.08%), Query Frame = 1 

Query: 5   PTPLSLSFFSSSIFLSSTNDNLKLFG-NWKPNSRIPQNKPLSISSQLATLPVLSFAGEEV 64
           PTP SLSFFSSS+FLSS +  L     ++K +S    N  L I+SQL+TL +LSF GE++
Sbjct: 6   PTPTSLSFFSSSLFLSSPSTKLPCLSLSFKTSS----NPNLCIASQLSTLSILSFTGEKI 65

Query: 65  GKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKAR 124
           G+TYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTR+EV GGG+KPY QKKTG+AR
Sbjct: 66  GETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRSEVRGGGKKPYPQKKTGRAR 125

Query: 125 RGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKP 184
           RGSMR+PLRPGGGVIFGPKPRDWSIKIN+KEKRLAISTA++SAA NTIVVE+FGDKFEKP
Sbjct: 126 RGSMRSPLRPGGGVIFGPKPRDWSIKINKKEKRLAISTALSSAAQNTIVVEEFGDKFEKP 185

Query: 185 KTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNSDKL 244
           KTK+F+ ALKRWG+DPK+KS+FLM EV +NV LSSRN+GTL++LTPRTLNLFDILN D L
Sbjct: 186 KTKDFMEALKRWGLDPKQKSMFLMMEVPENVNLSSRNIGTLRMLTPRTLNLFDILNCDNL 245

Query: 245 VLTPAAVDYLNERYGNNYEEGIADEEEEDEE 275
           VLTP AVDYLN RYG +YE    D++EE+EE
Sbjct: 246 VLTPDAVDYLNGRYGEDYEGDTEDDDEEEEE 272

[Close]
BLAST of Cp4.1LG16g06520 vs. TrEMBL
Match: F6GUU0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06140 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 1.3e-105
Identity = 210/285 (73.68%), Postives = 234/285 (82.11%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAG 60
           MAT  T  S+SFFSSSIF SS+  N      +KPNS +   KPLS+ S L  +P+LSF G
Sbjct: 1   MATTATSPSISFFSSSIFGSSSRQNPNFLSTFKPNSFLKPLKPLSVRSDLVAIPILSFTG 60

Query: 61  EEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120
           E+VG+T L+LKSAP +TARAVVHR IITD QN+RRGTASTLTR EV GGG+KPY QKKTG
Sbjct: 61  EKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGGGKKPYPQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           +ARRGS RTPLRPGGGV+FGPKPRDWSIKINRKEKRLAISTA++SAAVNTIVVEDF DKF
Sbjct: 121 RARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAAVNTIVVEDFSDKF 180

Query: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNS 240
           +KPKTKEFI+A+KRWGIDPKEKS+FLMTEVSDNVRLSSRN+GTLK+LTPRTLNLFDILNS
Sbjct: 181 DKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNS 240

Query: 241 DKLVLTPAAVDYLNERYGNNYEEGIADEEEEDE---EGLEEIDNN 283
           DKLVLT   VDYLN  Y        AD+EEE E   EGLE  D N
Sbjct: 241 DKLVLTQETVDYLNRMYAVEAIGEEADDEEEYEDGDEGLEAADEN 285

[Close]
BLAST of Cp4.1LG16g06520 vs. TAIR10
Match: AT1G07320.1 (AT1G07320.1 ribosomal protein L4)

HSP 1 Score: 359.8 bits (922), Expect = 1.6e-99
Identity = 190/275 (69.09%), Postives = 231/275 (84.00%), Query Frame = 1 

Query: 7   PLSLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAGEEVGKT 66
           P SLSFFSSS+FLSS++   K + +         +KPLS+SSQLATLP+LSF GE+VG+T
Sbjct: 8   PNSLSFFSSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGEKVGET 67

Query: 67  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGS 126
           YLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG ARRGS
Sbjct: 68  YLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGS 127

Query: 127 MRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFGDKFEKP 186
            RTPLRPGGGV+FGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG+KFEKP
Sbjct: 128 QRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKP 187

Query: 187 KTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNSDKL 246
           KTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRN+GTL++LTPRTLNLFDILN+DKL
Sbjct: 188 KTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKL 247

Query: 247 VLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEE 279
           VLTPAAV++LN RYG +  E   D++E++ EG EE
Sbjct: 248 VLTPAAVEFLNARYGVDAVEE-EDDDEDETEGSEE 281

[Close]
BLAST of Cp4.1LG16g06520 vs. TAIR10
Match: AT2G20060.1 (AT2G20060.1 Ribosomal protein L4/L1 family)

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-20
Identity = 64/206 (31.07%), Postives = 112/206 (54.37%), Query Frame = 1 

Query: 53  LPVLSFAGEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRK 112
           +PV +F  EE G   L          + ++H  +      +++GT ST T +EVSG GRK
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 113 PYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAV--NT 172
           P+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL +  A+ + A     
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 173 IVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPR 232
           +V +D G      KTK  +    +   + K+  +     + + ++L+++N+  + ++   
Sbjct: 211 LVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 270

Query: 233 TLNLFDILNSDKLVLTPAAVDYLNER 257
            LN++ IL  D L+++  AV+ + ER
Sbjct: 271 GLNVYSILLHDTLLMSRDAVNKIVER 293

[Close]
BLAST of Cp4.1LG16g06520 vs. NCBI nr
Match: gi|659128117|ref|XP_008464054.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 463.4 bits (1191), Expect = 2.9e-127
Identity = 246/279 (88.17%), Postives = 260/279 (93.19%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSST-NDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFA 60
           MA   +P SLSFF+SS+FLSS  + N  LF N KPNS  PQ KPLSISS+LATLPVLSF 
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GE+VG+TYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGV+FGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILN 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRN+GTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEE 279
           SDKLVLTPAAVDYLNERYG NYEEGI +EEEE+EE  EE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEE 279

[Close]
BLAST of Cp4.1LG16g06520 vs. NCBI nr
Match: gi|659128115|ref|XP_008464053.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 462.6 bits (1189), Expect = 4.9e-127
Identity = 246/284 (86.62%), Postives = 262/284 (92.25%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSST-NDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFA 60
           MA   +P SLSFF+SS+FLSS  + N  LF N KPNS  PQ KPLSISS+LATLPVLSF 
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GE+VG+TYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGV+FGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILN 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRN+GTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEEIDNNQ 284
           SDKLVLTPAAVDYLNERYG NYEEGI +EEEE+EE  EE +  +
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEE 284

[Close]
BLAST of Cp4.1LG16g06520 vs. NCBI nr
Match: gi|449450794|ref|XP_004143147.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 2.7e-125
Identity = 242/280 (86.43%), Postives = 262/280 (93.57%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSS-TNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFA 60
           MAT  +P SLSFF+SS+FLSS ++ NL LF N KPNS  PQ K LSISS+LATLPVLSF 
Sbjct: 1   MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSLKPQTKTLSISSELATLPVLSFT 60

Query: 61  GEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G++VG+TYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPY+QKKT
Sbjct: 61  GQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGSMRTPLRPGGGV+FGPKPRDWSIKINRKEK+LAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILN 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRN+GTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVDYLNERYGNNYEEGI--ADEEEEDEEGLE 278
           SDKLVLTP AVDYLNERYG NYEEGI   +EEEE+EEG+E
Sbjct: 241 SDKLVLTPTAVDYLNERYGINYEEGIEEGEEEEEEEEGVE 280

[Close]
BLAST of Cp4.1LG16g06520 vs. NCBI nr
Match: gi|700191898|gb|KGN47102.1| (hypothetical protein Csa_6G187950 [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 2.7e-125
Identity = 242/280 (86.43%), Postives = 262/280 (93.57%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSS-TNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFA 60
           MAT  +P SLSFF+SS+FLSS ++ NL LF N KPNS  PQ K LSISS+LATLPVLSF 
Sbjct: 155 MATSISPSSLSFFTSSVFLSSPSHQNLNLFFNSKPNSLKPQTKTLSISSELATLPVLSFT 214

Query: 61  GEEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           G++VG+TYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPY+QKKT
Sbjct: 215 GQKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYKQKKT 274

Query: 121 GKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           G+ARRGSMRTPLRPGGGV+FGPKPRDWSIKINRKEK+LAISTAVASAAVNTIVVE+FGDK
Sbjct: 275 GRARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKKLAISTAVASAAVNTIVVEEFGDK 334

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILN 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRN+GTLKLLTPRTLNLFDIL+
Sbjct: 335 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 394

Query: 241 SDKLVLTPAAVDYLNERYGNNYEEGI--ADEEEEDEEGLE 278
           SDKLVLTP AVDYLNERYG NYEEGI   +EEEE+EEG+E
Sbjct: 395 SDKLVLTPTAVDYLNERYGINYEEGIEEGEEEEEEEEGVE 434

[Close]
BLAST of Cp4.1LG16g06520 vs. NCBI nr
Match: gi|645216299|ref|XP_008220485.1| (PREDICTED: 50S ribosomal protein L4, chloroplastic [Prunus mume])

HSP 1 Score: 402.1 bits (1032), Expect = 7.9e-109
Identity = 214/283 (75.62%), Postives = 244/283 (86.22%), Query Frame = 1 

Query: 1   MATFPTPLSLSFFSSSIFLSSTNDNLKLFGNWKPNSRIPQNKPLSISSQLATLPVLSFAG 60
           MA   TPLSLSFF+SSIFL+S++   K      P + +   KPL+ISS+LATLPVLSF+G
Sbjct: 1   MAASATPLSLSFFTSSIFLTSSSH--KPLSTLIPKNSLRTPKPLTISSELATLPVLSFSG 60

Query: 61  EEVGKTYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 120
           ++VG+T+LDLK+A P+TARAVVHRAIITD QNKRRGTASTLTRAEV GGGRKPY QKKTG
Sbjct: 61  DKVGETFLDLKAALPDTARAVVHRAIITDLQNKRRGTASTLTRAEVRGGGRKPYPQKKTG 120

Query: 121 KARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKF 180
           +AR+GS RTPLRPGGGV+FGPKPRDWSIKINRKEKRLAISTAVASAA NTIVVEDF D+F
Sbjct: 121 RARQGSTRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAENTIVVEDFSDEF 180

Query: 181 EKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNVGTLKLLTPRTLNLFDILNS 240
           EKPKTKEFIAA+KRWG+DP EK+ FLM EV+DNVRLSSRN+GTLK+LTPRTLNLFDILN+
Sbjct: 181 EKPKTKEFIAAMKRWGLDPNEKTTFLMREVADNVRLSSRNIGTLKMLTPRTLNLFDILNA 240

Query: 241 DKLVLTPAAVDYLNERYGNNYEEGIADEEEEDEEGLEEIDNNQ 284
           DKL+LTP  VDYLN RYG NYE    DE+EED+EG EE D  +
Sbjct: 241 DKLILTPEIVDYLNARYGLNYEGD--DEDEEDDEGAEEEDEEE 279

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g06520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK4_ARATH2.8e-9869.0950S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=... [more]
RK4_TOBAC2.2e-9569.5550S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1[more]
RK4_SPIOL3.7e-9064.0050S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1[more]
RL4_THEEB2.7e-5654.1550S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD ... [more]
RL4_MICAN5.9e-5652.4550S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) GN=rplD PE=... [more]
BLAST of Cp4.1LG16g06520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFB8_CUCSA1.9e-12586.43Uncharacterized protein OS=Cucumis sativus GN=Csa_6G187950 PE=3 SV=1[more]
M5WJ64_PRUPE1.6e-10875.27Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009351mg PE=3 SV=1[more]
W9S021_9ROSA3.6e-10876.6650S ribosomal protein L4 OS=Morus notabilis GN=L484_022055 PE=3 SV=1[more]
A0A061GWI6_THECC5.7e-10675.2850S ribosomal protein L4 isoform 1 OS=Theobroma cacao GN=TCM_041662 PE=3 SV=1[more]
F6GUU0_VITVI1.3e-10573.68Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06140 PE=3 SV=... [more]
BLAST of Cp4.1LG16g06520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07320.11.6e-9969.09 ribosomal protein L4[more]
AT2G20060.14.3e-2031.07 Ribosomal protein L4/L1 family[more]
BLAST of Cp4.1LG16g06520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128117|ref|XP_008464054.1|2.9e-12788.17PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo][more]
gi|659128115|ref|XP_008464053.1|4.9e-12786.62PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo][more]
gi|449450794|ref|XP_004143147.1|2.7e-12586.43PREDICTED: 50S ribosomal protein L4, chloroplastic [Cucumis sativus][more]
gi|700191898|gb|KGN47102.1|2.7e-12586.43hypothetical protein Csa_6G187950 [Cucumis sativus][more]
gi|645216299|ref|XP_008220485.1|7.9e-10975.62PREDICTED: 50S ribosomal protein L4, chloroplastic [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023574Ribosomal_L4_dom_sf
IPR013005Ribosomal_uL4/L1e
IPR002136Ribosomal_L4/L1e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g06520.1Cp4.1LG16g06520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 77..256
score: 6.9
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 58..258
score: 2
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 1..283
score: 3.2E
IPR01300550S ribosomal protein uL4TIGRFAMsTIGR03953TIGR03953coord: 76..254
score: 1.6
IPR023574Ribosomal protein L4 domainGENE3DG3DSA:3.40.1370.10coord: 107..257
score: 1.2
IPR023574Ribosomal protein L4 domainunknownSSF52166Ribosomal protein L4coord: 52..258
score: 4.71
NoneNo IPR availablePANTHERPTHR10746:SF1050S RIBOSOMAL PROTEIN L4, CHLOROPLASTICcoord: 1..283
score: 3.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g06520Cucsa.139100Cucumber (Gy14) v1cgycpeB0374
Cp4.1LG16g06520CmaCh20G003600Cucurbita maxima (Rimu)cmacpeB564
Cp4.1LG16g06520CmaCh02G007600Cucurbita maxima (Rimu)cmacpeB625
Cp4.1LG16g06520CmoCh02G007640Cucurbita moschata (Rifu)cmocpeB574
Cp4.1LG16g06520CmoCh20G003890Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g06520Cla013346Watermelon (97103) v1cpewmB303
Cp4.1LG16g06520Csa6G187950Cucumber (Chinese Long) v2cpecuB290
Cp4.1LG16g06520MELO3C025869Melon (DHL92) v3.5.1cpemeB247
Cp4.1LG16g06520ClCG02G019690Watermelon (Charleston Gray)cpewcgB266
Cp4.1LG16g06520CSPI06G13990Wild cucumber (PI 183967)cpecpiB292
Cp4.1LG16g06520Lsi10G014180Bottle gourd (USVL1VR-Ls)cpelsiB219
Cp4.1LG16g06520MELO3C025869.2Melon (DHL92) v3.6.1cpemedB292
Cp4.1LG16g06520CsaV3_6G016380Cucumber (Chinese Long) v3cpecucB0359
Cp4.1LG16g06520Bhi10G000615Wax gourdcpewgoB0353
Cp4.1LG16g06520CsGy6G013870Cucumber (Gy14) v2cgybcpeB767
Cp4.1LG16g06520Carg23841Silver-seed gourdcarcpeB0727
Cp4.1LG16g06520Carg03353Silver-seed gourdcarcpeB0465
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g06520Cp4.1LG05g09600Cucurbita pepo (Zucchini)cpecpeB308
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g06520Cucurbita pepo (Zucchini)cpecpeB303
Cp4.1LG16g06520Cucurbita pepo (Zucchini)cpecpeB325
Cp4.1LG16g06520Cucurbita maxima (Rimu)cmacpeB821
Cp4.1LG16g06520Cucurbita moschata (Rifu)cmocpeB775
Cp4.1LG16g06520Silver-seed gourdcarcpeB0224
Cp4.1LG16g06520Silver-seed gourdcarcpeB1386