Lsi10G005570 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G005570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 8129991 .. 8130377 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTTACCATTTTCAAGCCATATGCCAATGTGCTATTCTTCTACTCACCATCTTCATAGCCTTTGGAACTCATCAAAGCCAAGGAAGGCCTTTGAAACCTCATTCTTCATCTCAAATTCCTCTCCACTCCTCTCCCGGTTACGGTTTTCGGGAGTCCGACGTGGGTAGCAAAGACGATTTTCGCCCCACGACACCCGGAAACAGCCCCGGAGTCGGCCACCATTCGGTCGGGAGAAGTGGTGTCATCGCTGCCATTGCTGCTGCCGGTCGATCGGTGCACAATACGGAAGGGTTGAAGGATGATTTCCGGCCAACCGCACCGGGACATAGCCCCGGCATTGGCCATGTTCTCCATCGCTTTGCTTCCAAACCAAATGCTTAG

mRNA sequence

ATGGGAATTTACCATTTTCAAGCCATATGCCAATGTGCTATTCTTCTACTCACCATCTTCATAGCCTTTGGAACTCATCAAAGCCAAGGAAGGCCTTTGAAACCTCATTCTTCATCTCAAATTCCTCTCCACTCCTCTCCCGGTTACGGTTTTCGGGAGTCCGACGTGGGTAGCAAAGACGATTTTCGCCCCACGACACCCGGAAACAGCCCCGGAGTCGGCCACCATTCGGTCGGGAGAAGTGGTGTCATCGCTGCCATTGCTGCTGCCGGTCGATCGGTGCACAATACGGAAGGGTTGAAGGATGATTTCCGGCCAACCGCACCGGGACATAGCCCCGGCATTGGCCATGTTCTCCATCGCTTTGCTTCCAAACCAAATGCTTAG

Coding sequence (CDS)

ATGGGAATTTACCATTTTCAAGCCATATGCCAATGTGCTATTCTTCTACTCACCATCTTCATAGCCTTTGGAACTCATCAAAGCCAAGGAAGGCCTTTGAAACCTCATTCTTCATCTCAAATTCCTCTCCACTCCTCTCCCGGTTACGGTTTTCGGGAGTCCGACGTGGGTAGCAAAGACGATTTTCGCCCCACGACACCCGGAAACAGCCCCGGAGTCGGCCACCATTCGGTCGGGAGAAGTGGTGTCATCGCTGCCATTGCTGCTGCCGGTCGATCGGTGCACAATACGGAAGGGTTGAAGGATGATTTCCGGCCAACCGCACCGGGACATAGCCCCGGCATTGGCCATGTTCTCCATCGCTTTGCTTCCAAACCAAATGCTTAG

Protein sequence

MGIYHFQAICQCAILLLTIFIAFGTHQSQGRPLKPHSSSQIPLHSSPGYGFRESDVGSKDDFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNTEGLKDDFRPTAPGHSPGIGHVLHRFASKPNA

Homology

[Close]

BLAST of Lsi10G005570 vs. TrEMBL
Match: A0A0A0LMN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285370 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.6e-54
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 1


Query: 1   MGIYHFQAICQCAILLLTIFIAFGTHQSQGRPLKPHSSSQIPLHSSPGYGFRESDVGSKD 60
           MG YHFQ ICQCAILLLTIFIAFGT+Q QGRP KP +SS IP HSS G GFRESDVGSKD
Sbjct: 1   MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPFKPLTSSHIPSHSSLGDGFRESDVGSKD 60

Query: 61  DFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNTEGLKDDFRPTAPGHSPGIGHVLH 120
           DFRPTTPGNSPGVGHHS+ RSG +AAIA+ GR+VH TEGLKDDFRPTAPGHSPGIGHV H
Sbjct: 61  DFRPTTPGNSPGVGHHSIRRSGTMAAIASDGRAVHITEGLKDDFRPTAPGHSPGIGHVQH 120

Query: 121 RFASKPNA 129
             ASKPNA
Sbjct: 121 HIASKPNA 128

[Close]

BLAST of Lsi10G005570 vs. TrEMBL
Match: F6H4L8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00900 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.8e-14
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 40  QIPLHSSPGY--GFRESDVGSKDDFRPTTPGNSPGVGHHSVGRSGVI--AAIAAAGRSVH 99
           ++P    P Y  GF +S   SKDDFRPTTPG+SPGVGHHSV         A+  +     
Sbjct: 131 ELPPPMLPNYSVGFGDSTAVSKDDFRPTTPGSSPGVGHHSVPTKDDTQPKALRNSPSVRQ 190

Query: 100 NTEGLKDDFRPTAPGHSPGIGHVLHRFASKPNA 129
           +    KDD+RPT PGHSPG+GH L +  ++PNA
Sbjct: 191 SVTAYKDDYRPTKPGHSPGVGHSLQKTNAEPNA 223

[Close]

BLAST of Lsi10G005570 vs. TrEMBL
Match: A0A067GHU6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g043660mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-11
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 28  SQGRPLKPHS-----SSQIPLHSSPGYGFRESDVG-SKDDFRPTTPGNSPGVGH--HSVG 87
           S+GR +K  +     S++      P  G++ES     +DDFRPTTPGNSPGVGH  H++ 
Sbjct: 7   SEGRQIKSMNRKETISTEGKKEILPPIGYQESAAAHEEDDFRPTTPGNSPGVGHSHHTLD 66

Query: 88  RSGVIAAIAAAGRSV---HNTEGLKDDFRPTAPGHSPGIGH 118
               + +      ++   H+  G KDDFRPT+PGHSPGIGH
Sbjct: 67  NIEDVESKVLGTSNIAAGHSVAGFKDDFRPTSPGHSPGIGH 107

[Close]

BLAST of Lsi10G005570 vs. TrEMBL
Match: A0A061DHT1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000585 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-11
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 41  IPLHSSPGYGFRESDVGSKDDFRPTTPGNSPGVGHHSVGRSGVI---AAIAAAGRSVHNT 100
           IP  SS    F +S  G KDDFRPTTPGNSPGVGH  V     +   +   +     H++
Sbjct: 81  IPTKSSD---FGDSLAGYKDDFRPTTPGNSPGVGHQFVEDDEDVEQKSGSFSPSNDSHSS 140

Query: 101 EGLKDDFRPTAPGHSPGIGH 118
            G K+DFRPT PGHSPG+GH
Sbjct: 141 AGGKEDFRPTNPGHSPGVGH 157

[Close]

BLAST of Lsi10G005570 vs. TrEMBL
Match: A0A059AZM4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H02001 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.6e-10
Identity = 38/78 (48.72%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 53  ESDVGSKDDFRPTTPGNSPGVGHHSVG--RSGVIAAIAAAGRSVHNTEGLKDDFRPTAPG 112
           ES+   KDDFRPTTPG+SPGVGH  VG  + G  A   +          +  DFRPT PG
Sbjct: 86  ESNAVYKDDFRPTTPGSSPGVGHSFVGSKKEGAQAKAPSGNEERLTITEILGDFRPTEPG 145

Query: 113 HSPGIGHVLHRFASKPNA 129
           HSPG+GHV      +P A
Sbjct: 146 HSPGVGHVFESKIDEPKA 163

[Close]

BLAST of Lsi10G005570 vs. TAIR10
Match: AT5G66816.1 (AT5G66816.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 7.3e-12
Identity = 34/73 (46.58%), Postives = 41/73 (56.16%), Query Frame = 1


Query: 56  VGSKDDFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNTEGLKDDFRPTAPGHSPGI 115
           VG  DDF PT+PGNSPG+GH                 +  N  G KDDF PT PGHSPG+
Sbjct: 44  VGYTDDFGPTSPGNSPGIGHKMK-------------ENEENAGGYKDDFEPTTPGHSPGV 101

Query: 116 GHVLHRFASKPNA 129
           GH +    ++PNA
Sbjct: 104 GHAVKN--NEPNA 101

[Close]

BLAST of Lsi10G005570 vs. TAIR10
Match: AT3G50610.1 (AT3G50610.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 29/63 (46.03%), Postives = 33/63 (52.38%), Query Frame = 1


Query: 57  GSKDDFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNTEGLKDDFRPTAPGHSPGIG 116
           GS DDF PTTPGNSPG+GH                          DDF+PT PGHSPG+G
Sbjct: 183 GSTDDFAPTTPGNSPGMGHKK-----------------------GDDFKPTTPGHSPGVG 222

Query: 117 HVL 120
           H +
Sbjct: 243 HAV 222

[Close]

BLAST of Lsi10G005570 vs. NCBI nr
Match: gi|659116194|ref|XP_008457955.1| (PREDICTED: uncharacterized protein LOC103497520 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 5.0e-55
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 1   MGIYHFQAICQCAILLLTIFIAFGTHQSQGRPLKPHSSSQIPLHSSPGYGFRESDVGSKD 60
           MG YHFQ ICQCAILLLTIFIAFGT+Q QGRPLKPH+SS IP HSS G GFRES+VGSKD
Sbjct: 1   MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGDGFRESNVGSKD 60

Query: 61  DFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNTEGLKDDFRPTAPGHSPGIGHVLH 120
           DFRPTTPGNSPGVGHHSV RSG +AAIA+  + VHNTEGLKDDFRPTAPGHSPGIGHVLH
Sbjct: 61  DFRPTTPGNSPGVGHHSVQRSGTMAAIASNNQLVHNTEGLKDDFRPTAPGHSPGIGHVLH 120

Query: 121 RFASKPNA 129
             ASKPNA
Sbjct: 121 GIASKPNA 128

[Close]

BLAST of Lsi10G005570 vs. NCBI nr
Match: gi|778674197|ref|XP_011650158.1| (PREDICTED: uncharacterized protein LOC105434739 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 9.5e-54
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 1


Query: 1   MGIYHFQAICQCAILLLTIFIAFGTHQSQGRPLKPHSSSQIPLHSSPGYGFRESDVGSKD 60
           MG YHFQ ICQCAILLLTIFIAFGT+Q QGRP KP +SS IP HSS G GFRESDVGSKD
Sbjct: 1   MGNYHFQTICQCAILLLTIFIAFGTYQIQGRPFKPLTSSHIPSHSSLGDGFRESDVGSKD 60

Query: 61  DFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNTEGLKDDFRPTAPGHSPGIGHVLH 120
           DFRPTTPGNSPGVGHHS+ RSG +AAIA+ GR+VH TEGLKDDFRPTAPGHSPGIGHV H
Sbjct: 61  DFRPTTPGNSPGVGHHSIRRSGTMAAIASDGRAVHITEGLKDDFRPTAPGHSPGIGHVQH 120

Query: 121 RFASKPNA 129
             ASKPNA
Sbjct: 121 HIASKPNA 128

[Close]

BLAST of Lsi10G005570 vs. NCBI nr
Match: gi|359480691|ref|XP_003632513.1| (PREDICTED: uncharacterized protein LOC100854101 [Vitis vinifera])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 40  QIPLHSSPGY--GFRESDVGSKDDFRPTTPGNSPGVGHHSVGRSGVI--AAIAAAGRSVH 99
           ++P    P Y  GF +S   SKDDFRPTTPG+SPGVGHHSV         A+  +     
Sbjct: 81  ELPPPMLPNYSVGFGDSTAVSKDDFRPTTPGSSPGVGHHSVPTKDDTQPKALRNSPSVRQ 140

Query: 100 NTEGLKDDFRPTAPGHSPGIGHVLHRFASKPNA 129
           +    KDD+RPT PGHSPG+GH L +  ++PNA
Sbjct: 141 SVTAYKDDYRPTKPGHSPGVGHSLQKTNAEPNA 173

[Close]

BLAST of Lsi10G005570 vs. NCBI nr
Match: gi|296082442|emb|CBI21447.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 78.6 bits (192), Expect = 9.0e-12
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 1


Query: 40  QIPLHSSPGY--GFRESDVGSKDDFRPTTPGNSPGVGHHSVGRSGVIAAIAAAGRSVHNT 99
           ++P    P Y  GF +S   SKDDFRPTTPG+SPGVGHHS                    
Sbjct: 177 ELPPPMLPNYSVGFGDSTAVSKDDFRPTTPGSSPGVGHHS-------------------- 236

Query: 100 EGLKDDFRPTAPGHSPGIGHVLHRFASKPNA 129
               DD+RPT PGHSPG+GH L +  ++PNA
Sbjct: 237 ----DDYRPTKPGHSPGVGHSLQKTNAEPNA 243

[Close]

BLAST of Lsi10G005570 vs. NCBI nr
Match: gi|731397785|ref|XP_010653007.1| (PREDICTED: uncharacterized protein LOC104879943 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1


Query: 42  PLHSSPGYGFRESDVGSKDDFRPTTPGNSPGVGHHSVGRSGVIA--AIAAAGRSVHNTEG 101
           P+  +   GF +S    KD FRPTTPG+SPG+GH  V     I   A+  +    H+   
Sbjct: 85  PITPNYSIGFGDSTAVYKDGFRPTTPGSSPGIGHQFVPTKEDIQPKALGNSPSVRHSVTA 144

Query: 102 LKDDFRPTAPGHSPGIGHVLHRFASKPNA 129
            KDD+RPT PGHSPG+GH L +  ++PNA
Sbjct: 145 YKDDYRPTMPGHSPGVGHSLQKKNAEPNA 173

The following BLAST results are available for this feature:

BLAST of Lsi10G005570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G005570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMN4_CUCSA	6.6e-54	82.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285370 PE=4 SV=1	[more]
F6H4L8_VITVI	8.8e-14	48.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00900 PE=4 SV=...	[more]
A0A067GHU6_CITSI	5.3e-11	43.56	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g043660mg PE=4 S...	[more]
A0A061DHT1_THECC	9.1e-11	51.25	Uncharacterized protein OS=Theobroma cacao GN=TCM_000585 PE=4 SV=1	[more]
A0A059AZM4_EUCGR	2.6e-10	48.72	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H02001 PE=4 ...	[more]

BLAST of Lsi10G005570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66816.1	7.3e-12	46.58	unknown protein	[more]
AT3G50610.1	2.0e-09	46.03	unknown protein	[more]

BLAST of Lsi10G005570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116194\|ref\|XP_008457955.1\|	5.0e-55	84.38	PREDICTED: uncharacterized protein LOC103497520 [Cucumis melo]	[more]
gi\|778674197\|ref\|XP_011650158.1\|	9.5e-54	82.81	PREDICTED: uncharacterized protein LOC105434739 [Cucumis sativus]	[more]
gi\|359480691\|ref\|XP_003632513.1\|	1.3e-13	48.39	PREDICTED: uncharacterized protein LOC100854101 [Vitis vinifera]	[more]
gi\|296082442\|emb\|CBI21447.3\|	9.0e-12	46.15	unnamed protein product [Vitis vinifera]	[more]
gi\|731397785\|ref\|XP_010653007.1\|	1.5e-11	44.94	PREDICTED: uncharacterized protein LOC104879943 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G005570.1	Lsi10G005570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33348:SF1	SUBFAMILY NOT NAMED	coord: 51..119 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G005570	Csa2G285370	Cucumber (Chinese Long) v2	culsiB093
Lsi10G005570	CSPI02G14240	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G005570	Cucsa.366920	Cucumber (Gy14) v1	cgylsiB594
Lsi10G005570	CmaCh02G005810	Cucurbita maxima (Rimu)	cmalsiB553
Lsi10G005570	Cla020199	Watermelon (97103) v1	lsiwmB065
Lsi10G005570	MELO3C020904	Melon (DHL92) v3.5.1	lsimeB046
Lsi10G005570	ClCG02G012670	Watermelon (Charleston Gray)	lsiwcgB045
Lsi10G005570	MELO3C020904.2	Melon (DHL92) v3.6.1	lsimedB048
Lsi10G005570	Cla97C02G038350	Watermelon (97103) v2	lsiwmbB044
Lsi10G005570	Bhi10G001700	Wax gourd	lsiwgoB082
Lsi10G005570	Cp4.1LG05g11020	Cucurbita pepo (Zucchini)	cpelsiB595
Lsi10G005570	CsGy2G014120	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G005570	Carg11650	Silver-seed gourd	carlsiB968
Lsi10G005570	CsaV3_2G016780	Cucumber (Chinese Long) v3	cuclsiB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G005570	Bottle gourd (USVL1VR-Ls)	lsilsiB027
Lsi10G005570	Cucurbita maxima (Rimu)	cmalsiB512
Lsi10G005570	Cucurbita maxima (Rimu)	cmalsiB546
Lsi10G005570	Cucurbita moschata (Rifu)	cmolsiB488
Lsi10G005570	Cucurbita moschata (Rifu)	cmolsiB530
Lsi10G005570	Cucurbita pepo (Zucchini)	cpelsiB604
Lsi10G005570	Cucumber (Chinese Long) v2	culsiB420
Lsi10G005570	Melon (DHL92) v3.5.1	lsimeB054
Lsi10G005570	Cucumber (Gy14) v2	cgyblsiB388
Lsi10G005570	Melon (DHL92) v3.6.1	lsimedB056
Lsi10G005570	Silver-seed gourd	carlsiB738
Lsi10G005570	Silver-seed gourd	carlsiB963
Lsi10G005570	Cucumber (Chinese Long) v3	cuclsiB446
Lsi10G005570	Watermelon (97103) v2	lsiwmbB038