Lsi10G003710 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G003710
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription factor
Locationchr10 : 5721018 .. 5726132 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTCCCCCCTAATTTCTTTCTTCTCTCTCACATTATTTATATATCTCTTCTCTTCTTTTTACTTTCATTCAACAACCAACAAAAACCACAAAACTACTCAACCCAATATTAACTCTTTTGGGCTGCCGGCCGGAGACATGTTCAAGTCAGAGATGACGGTATCGGCTCGACTCAAACGACGGCGACCCCTCGGTGACTGTCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCGACCATTTCGAGGATCTAGTTGCACCCAGAAGTTGGCCCGAGTTGGTCAAGTACGAGATCTCTTCTACGAAGTTTCGAACCAATCAGACGTGTTCGCCCCCCGTAGAGGTGATGGTTCGTTCAGTTAAATCATCACTAAACTCAAAAGTTTTAAGCTACAATCTATTCAATTGTATATTTATAACATTTTCTTAAGGTTATAATTATACTCGTTATTAAGGTGATACTTCTTTTCTTTTTTTATTTTAAGTTCGAGTGAGAGGATTCAAAACTCTAATTTTGAGAAGAATTAGTAACGCTTATATTGGCAATACTACACTAATTTCAAATGTCAGATCAAATATTAAGTTATTAATAGTAACAAAAGTTTAAATGGAAAGATTATTGTACATTATTTAAGTTACGATCTAATAACCAATTTGTTTTTTTAAAATAATGTTAGTTTTTTCACAATTTTTTATAAGCTTTTCACCTTGGTTAGAAACTCATTTGAATCATCAACCAAATTTAAAAAACCAAACCAAAATTTTAAAAGCGACTTAGTTTAAGTTTTCAAAGTTTAGCACGATTTAATTATTTTTTTAGTAGGTGATACAATGAGAAAACTATGTGTAAAAGTAATGTTTATGGATAAATTTAAAAAACATAAAAACTAAAAAAAAATGGTTATGTCACGAATAAAAAAAAACACAACCCCATTTAGTTTTTAATTATTGAAATTTAAATTTATAAAGATTACTGTTTTAATTTAGAGACATTTTAAAAATTCCAGTTGAGTTCTAAAAATTAAAAAGAATTATTTTTACAATTATTTTTTCATATTTTTGAAATTTGACTATGAATTCAAATATTTTTTTAAAAAAGAAACTATCATAAAAAAAAACCGTAAAAAATAAAAATGAAACCAGCACAAATTTAAAAAGCGAGTGAACGTGAAAAGAAGAAATGGGAGTCATAGAAACGAAAACTTCTTATTTCAAAAATGAAAAATCTAAGTAAGTTAAATCGTTATATTTAATCATTTATTTATATTGTTCGATGCAGGCGAACTTGGTGATCGAGGGAGAGATTTTGAAAAAGAGGAAAGGAAAGAAGAAAGAAATGAAATTAAAAGTGAGAAATGATGATAGTAATGTTGAATGTGAGGATGGAAAAAATTACAGAGAAAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAAATGAATCAAAGATTACAGAGGAAAAAGAGAGATGGAAACACAATTCAAAAGCTTCAAAAGAAGTTCAAATTTCAGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACAGACAGCCATAGTCTTGCAGAAAGAGTAAGAATTTTTTTTATTTATTTTTTATTTTTGAAAAAGTACTTTTTTTAGTCTAGTTTTCATTTGGTCCATACATTTTGAAATGTTACCCTTTTAGTACTTAGTTTTGAGTTTGATTTTAATTTGATCTCTAGATTTAGAGATTTAGGGTGTATTTGGTTTAACTTTTCAAGTGTTTAATTTTGAAAATGAGTCATTTTAAAAAAAATAAAATTAAAGTATTCGACAACCACTCAAAATAGCTTTTGAAATGCTTTTAAAGTTTAAATAATTTCTATTAGAAGAATTTAAATAATAATGACCTTTTTGAAAAAAAAAAATATTTTTTTCTCTAGTCAATTCAAACGGGTCATTGACTCATTACAATTTTAACCTTAATTTTTTCACTAAATACTCAATTTATAATCTTAATGTTAATGTTTATTAATTAATTGAAAAGAATTAAATTTACTTAAGTTTCACTATCAAAATTAATTTTAAAATTTCACTTTGTAATTATTTAAAATTAATTTATAGACATTTAGGAAAAATTTGAGGTTAAAAGTGCAAATCTTGAAATCTAGGGATCAAGTTGAAATAAAACTCAAATCTCATTGGTAAAAGTGAAATATTTTTAAATTGAAATAAAATTCAAAACTTAAGGACTAAAAGTGTAGCATTTTGAAATTTATGAACCAAATGAAAACTAGACCCAAAACTTAGGGACCAAAAATGTATTTTTTTTCCCCCATTTTTTGGGTTTAAATTACAAATTTTATATTTAAACTTTCAATTTTATGTTAAATAGGTCCCAAACTTTAAAAAAATATATTTAATAAATTCTCAAACTTTCAATTTTGTGTTTAATAGATATGTCTTTGACCTCAGCTTTGACATATTTTTTAAAATTAATGTATATAATAAACATAAAATTGAAGGATTTCATTAGACAAAATTCGATTTTGTATCAAATAGATCAATTATCAATTATTCTTTTTTAAAAAATTGAATATACACAAACCCTCTACTAAATACAAAATTGAAAGTCTAAAAACTTATTAGACGCAAAATTAAAAATTCATAAACTTATTATACACTTTTAAAAGTTTAGGGATCAAATAGATACAAACTTAAAAGTTGAGGACTAAACTTGTAATTTAACATTTTTTTTTAAATTTTTTTATAGTCTGTTTTTATTTGTTTATGGGGAAAATGGAATGATGTAAATATGTGAATATGCAGGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGCTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAGCAACAAGTTGAGGTAAAAAATTCATCTAAATTAACCACAAAAAAGAAAAAGAGAAAAAAAAAAAAAAAAACTTTTGAAAATTTGCACTAAAGGGCTTCTTTTTTTTTGTTTTCAATGTTGTGCAGTTCTTATCAATGAAGGTGGCTGCTTTAAATCACAGAGTTGATTTCATCAATGTAGATGAACTCTTGGCCAAACAGGTGAGAATAGATAGATAATCATTCACTCCCAATTTTATAAATTATTTTTTGGGCTTTTTTTTTTCAAATATAAAAAAATGAGTCAAACTATTTATAAATATAGAAAAATTTTACTATCTATCGGCGATAAACTGCGATAGAATTCTATCACTTGAACGATAGACAATTATAGAAGTTTATTAAATAGACAGTGGAACTTTTCTAATTTGTACATAGTTTGATATTTTTTCTATTTATAATAATTTTCTTTATTTTTTTTATAGATAATAATAAACGATTTCGAATAAAATGATATGATCTTTTGGACATGTAGAAATGCTTTAATTACTTAACTAAGATTAGGTTGTCAAATGGAATAGGTTATGTATATTCCATCGATAATAAAATATATAGTATTTGTAATTTAATAAATAAAACGTAGGGTAAATTATACTTTTAGCCTCTAGAATTTGTACAACTTATGTCTATTTAAGTTCATAGGTTTCAAAATTGTGCAATTATATTCAAGTTTCTTTTGCGCACACAAAAAATAATTACTTAATCATTTGAAAAAAAAAAAAAAACAAATTGTCACATGACAATTTTTTATTGGATGTTGCACAATAAATGGGTGCAACCTACGCTGTACCTAAGTTTTTCTCTTTGATCCAAATGTTAGAGTGTTACTTTTTGTTTAAAAAAAAGTATAAAGAAATTCATCCTTCCTCTTCTAGGCTCTCCCTTTTCTCCTACCTCTACTTCCTCCAATCCCTCATCTGGGGACTGCATCACAACCTATGTATCTCGTCGTTGTGCATTGCTCGAAGTCTCATCCAGATCTGGGTGAGGAACGCTTATTCCACATAACCATTTGGGAGGCAACAACGAGAGTGTTAGATAACATGAAGTTCCACCTCAAAACCAATTAGTAATAGGAGGAGTATAGTTCGTGTATCTTATAAAAATTGTGAGGTCTCTCAATTTTTTTCAATGTAGGATCTTCAAAATACCTTTTCAAGATGGTGCATCTCTGAGTTCATCATTCTTAGCTCGGAGCCTTTTTTTTTCTTTTTTTTTACCAAATACCCATTTAGATTTAAACCGAGTAAGTGGAAAGAGAATAAAGAAAAGAGGAAAGGGGCTAAAGGAGGGGGAGGAATAATATATATATATTTTCTTAAAAAAAATAACACATCACCACTTTTTTTATTATAAAAATGTCACGTCAAGGACTCAAATTCAAATTATATAATTTTCTAAACTAGAGGATAAGATCGCATAATTTTAAATTCCTCTTTTCTCTAAAACTTTAAAAACTAAAAGTATAATTTACTCTAAATTTTCCTCATTTTATTTAATCGTTAATTTCAACATTTTTGTATTCCGTAACGAAAATAATTTTTGTTCAACATTCTAACAAAGAAAATTTTCCAGGTATTTCCAACGATAACGGCTAATTCTTCATCCTACTTTAATCAACTTGGAATGGGCTCAAGCTCTCAAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTTAATTACTGTAATTTCCTTTTTCCACTTTTTTTTCCCTCAATAATTCAAATTCTTCATTTTTTAAATGATTTTTTTTTATTCTTTTTTATAGCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAGAGGTTTGAAGAAGGAGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCGCAACAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTATGGACCACCACAAAGTTGTTCCACTTTAATTTAACATTAAATTAATGTTATTGCAGATATATTATAATATATTCAAAATCCAACAAAATGTTTTATCATGAAAATTCACTAAAGTGTTGGCTGATGTTAGTAATTGATAAATTCAATTTTTATATGGATGGAATATTTGGTATTTTTCAATACCATATTCTTTTCCTTTTTTTTTCATTGTAATTAAGTAGGGATATTAATAAATGGTTCTTAG

mRNA sequence

CTTTTTCCCCCCTAATTTCTTTCTTCTCTCTCACATTATTTATATATCTCTTCTCTTCTTTTTACTTTCATTCAACAACCAACAAAAACCACAAAACTACTCAACCCAATATTAACTCTTTTGGGCTGCCGGCCGGAGACATGTTCAAGTCAGAGATGACGGTATCGGCTCGACTCAAACGACGGCGACCCCTCGGTGACTGTCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCGACCATTTCGAGGATCTAGTTGCACCCAGAAGTTGGCCCGAGTTGGTCAAGTACGAGATCTCTTCTACGAAGTTTCGAACCAATCAGACGTGTTCGCCCCCCGTAGAGGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGCTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAGCAACAAGTTGAGAAATGCTTTAATTACTTAACTAAGATTAGGTTGTCAAATGGAATAGGTTATGTATTTCCAACGATAACGGCTAATTCTTCATCCTACTTTAATCAACTTGGAATGGGCTCAAGCTCTCAAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTTAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAGAGGTTTGAAGAAGGAGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCGCAACAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTATGGACCACCACAAAGTTGTTCCACTTTAATTTAACATTAAATTAATGTTATTGCAGATATATTATAATATATTCAAAATCCAACAAAATGTTTTATCATGAAAATTCACTAAAGTGTTGGCTGATGTTAGTAATTGATAAATTCAATTTTTATATGGATGGAATATTTGGTATTTTTCAATACCATATTCTTTTCCTTTTTTTTTCATTGTAATTAAGTAGGGATATTAATAAATGGTTCTTAG

Coding sequence (CDS)

ATGTTCAAGTCAGAGATGACGGTATCGGCTCGACTCAAACGACGGCGACCCCTCGGTGACTGTCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCGACCATTTCGAGGATCTAGTTGCACCCAGAAGTTGGCCCGAGTTGGTCAAGTACGAGATCTCTTCTACGAAGTTTCGAACCAATCAGACGTGTTCGCCCCCCGTAGAGGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGCTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAGCAACAAGTTGAGAAATGCTTTAATTACTTAACTAAGATTAGGTTGTCAAATGGAATAGGTTATGTATTTCCAACGATAACGGCTAATTCTTCATCCTACTTTAATCAACTTGGAATGGGCTCAAGCTCTCAAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTTAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAGAGGTTTGAAGAAGGAGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCGCAACAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTATGGACCACCACAAAGTTGTTCCACTTTAA

Protein sequence

MFKSEMTVSARLKRRRPLGDCRSLSSVSTPASRVDHFEDLVAPRSWPELVKYEISSTKFRTNQTCSPPVEARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIGYVFPTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFMDHHKVVPL
Homology
[Close]
BLAST of Lsi10G003710 vs. Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-15
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 19  GDCRSLSSVSTPASRVDHFEDLVAPRSWPELVKYEISSTKFRTNQTC---SPPVEARREK 78
           G  +S+  +   A + ++     + +   EL K +    + R  Q     S     RREK
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193

Query: 79  ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           ISERMK+LQ+LVPGC+KI GKAGMLDEIINYVQSLQ+Q+E
Sbjct: 194 ISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233

[Close]
BLAST of Lsi10G003710 vs. Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 71  ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           ARREKIS++MK LQ++VPGCNK+ GKAGMLDEIINYVQSLQQQVE
Sbjct: 158 ARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202

[Close]
BLAST of Lsi10G003710 vs. Swiss-Prot
Match: HBI1_ARATH (Transcription factor HBI1 OS=Arabidopsis thaliana GN=HBI1 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 71  ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           ARREKIS++MKYLQ++VPGCNK+ GKAGMLDEIINYVQ LQ+QVE
Sbjct: 202 ARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246

[Close]
BLAST of Lsi10G003710 vs. Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIG 131
           RREKISERMK+LQ+LVPGC+K+ GKA MLDEIINYVQSLQ Q+E          LS  + 
Sbjct: 241 RREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIE---------FLSMKLS 300

Query: 132 YVFPTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLITHFELSSTWGGDLQRFEEGGP 191
            V P +  N  S   +  + SS+ T P      +N+S++       +  G +Q       
Sbjct: 301 AVNPVLDFNLESLLAKDALQSSAPTFP------HNMSMLYPPVSYLSQTGFMQ------- 360

Query: 192 PLLSPSSFLS-----QQCSGIEDENETLFMDHHK 221
           P +S  S LS     Q+  G E ++  L   +H+
Sbjct: 361 PNISSMSLLSGGLKRQETHGYESDHHNLVHMNHE 372

[Close]
BLAST of Lsi10G003710 vs. Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-14
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           RREKISERMK+LQ+LVPGCNK+ GKA MLDEIINYVQSLQ+QVE
Sbjct: 321 RREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364

[Close]
BLAST of Lsi10G003710 vs. TrEMBL
Match: A0A0A0LIZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247590 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.6e-32
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 133 VFPTITANSSSYFNQLG-MGSSSQTVPQTPLINNNLSLITHFELSSTWGGDLQRFEE--G 192
           +FPTIT N SSY  QLG MGSSS T+PQTPLIN+NLS ITHFE+SSTWGG+LQRFEE  G
Sbjct: 203 MFPTITDNRSSYDTQLGIMGSSSLTIPQTPLINSNLSSITHFEVSSTWGGELQRFEEGGG 262

Query: 193 GPPLLSPSSFLSQQCSGIEDENETLFMDHHKVVP 224
           GPPLLSPSSFLS QCS IEDENETLFMDH  ++P
Sbjct: 263 GPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLP 296

[Close]
BLAST of Lsi10G003710 vs. TrEMBL
Match: C0JP13_LOTJA (Putative basic helix-loop-helix protein BHLH7 OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-16
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIG 131
           RREKISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVE          LS  + 
Sbjct: 185 RREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVE---------FLSMKLA 244

Query: 132 YVFPTITANSSSYFNQLGMGSSSQTVPQTPLIN 165
            V P +  NS   F+++   S   T P   L N
Sbjct: 245 TVNPALEFNSDDLFDKVVFPSCDSTFPAINLTN 268

[Close]
BLAST of Lsi10G003710 vs. TrEMBL
Match: M0ZJ90_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000711 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKI--RLSNG 131
           RREKISERM++LQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVE     L  +  RL   
Sbjct: 255 RREKISERMRFLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDID 314

Query: 132 IGYVF-PTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLI 171
           +   F   I A S+S F+ +G G+SS+ +       N+L  I
Sbjct: 315 VDNFFNKDIFATSTSTFSTVGAGTSSEMLSMAQRQFNSLQQI 356

[Close]
BLAST of Lsi10G003710 vs. TrEMBL
Match: M0ZJ88_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000711 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKI--RLSNG 131
           RREKISERM++LQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVE     L  +  RL   
Sbjct: 255 RREKISERMRFLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDID 314

Query: 132 IGYVF-PTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLI 171
           +   F   I A S+S F+ +G G+SS+ +       N+L  I
Sbjct: 315 VDNFFNKDIFATSTSTFSTVGAGTSSEMLSMAQRQFNSLQQI 356

[Close]
BLAST of Lsi10G003710 vs. TrEMBL
Match: G7J737_MEDTR (BHLH transcription factor OS=Medicago truncatula GN=MTR_3g116770 PE=4 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 61/141 (43.26%), Postives = 76/141 (53.90%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKI--RLSNG 131
           RREKISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVE     L  +  RL   
Sbjct: 209 RREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPRLDFN 268

Query: 132 IG-----YVFPTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLITHFELSSTWG-GDL 191
           I       VFP   AN+S  F  +GM +   +       N+    + +  L +     D+
Sbjct: 269 IDDLFEKEVFPNCDANAS--FQAMGMSTGLNSNNPYLQFNSPQQFVPYGGLDAGMNPSDM 328

Query: 192 QRFEEGGPPLLSPSSFLSQQC 205
                   P+  P +F+   C
Sbjct: 329 GLRRSISAPVSIPQTFIDSSC 347

[Close]
BLAST of Lsi10G003710 vs. TAIR10
Match: AT4G34530.1 (AT4G34530.1 cryptochrome-interacting basic-helix-loop-helix 1)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-16
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 19  GDCRSLSSVSTPASRVDHFEDLVAPRSWPELVKYEISSTKFRTNQTC---SPPVEARREK 78
           G  +S+  +   A + ++     + +   EL K +    + R  Q     S     RREK
Sbjct: 134 GSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREK 193

Query: 79  ISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           ISERMK+LQ+LVPGC+KI GKAGMLDEIINYVQSLQ+Q+E
Sbjct: 194 ISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233

[Close]
BLAST of Lsi10G003710 vs. TAIR10
Match: AT2G18300.3 (AT2G18300.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-16
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 71  ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           ARREKIS++MKYLQ++VPGCNK+ GKAGMLDEIINYVQ LQ+QVE
Sbjct: 202 ARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246

[Close]
BLAST of Lsi10G003710 vs. TAIR10
Match: AT4G36540.1 (AT4G36540.1 BR enhanced expression 2)

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-16
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 

Query: 71  ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           ARREKIS++MK LQ++VPGCNK+ GKAGMLDEIINYVQSLQQQVE
Sbjct: 158 ARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202

[Close]
BLAST of Lsi10G003710 vs. TAIR10
Match: AT1G26260.1 (AT1G26260.1 cryptochrome-interacting basic-helix-loop-helix 5)

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-16
Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIG 131
           RREKISERMK+LQ+LVPGC+K+ GKA MLDEIINYVQSLQ Q+E          LS  + 
Sbjct: 241 RREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIE---------FLSMKLS 300

Query: 132 YVFPTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLITHFELSSTWGGDLQRFEEGGP 191
            V P +  N  S   +  + SS+ T P      +N+S++       +  G +Q       
Sbjct: 301 AVNPVLDFNLESLLAKDALQSSAPTFP------HNMSMLYPPVSYLSQTGFMQ------- 360

Query: 192 PLLSPSSFLS-----QQCSGIEDENETLFMDHHK 221
           P +S  S LS     Q+  G E ++  L   +H+
Sbjct: 361 PNISSMSLLSGGLKRQETHGYESDHHNLVHMNHE 372

[Close]
BLAST of Lsi10G003710 vs. TAIR10
Match: AT1G68920.1 (AT1G68920.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE 116
           RREKISERMK+LQ+LVPGCNK+ GKA MLDEIINYVQSLQ+QVE
Sbjct: 321 RREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364

[Close]
BLAST of Lsi10G003710 vs. NCBI nr
Match: gi|778669339|ref|XP_004148863.2| (PREDICTED: transcription factor bHLH78 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 4.0e-55
Identity = 121/166 (72.89%), Postives = 133/166 (80.12%), Query Frame = 1 

Query: 71  ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGI 130
           ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE  F  +    L++ +
Sbjct: 178 ARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE--FLSMKVAALNHRV 237

Query: 131 GYV----------FPTITANSSSYFNQLG-MGSSSQTVPQTPLINNNLSLITHFELSSTW 190
            ++          FPTIT N SSY  QLG MGSSS T+PQTPLIN+NLS ITHFE+SSTW
Sbjct: 238 DFINVDDLLAKQMFPTITDNRSSYDTQLGIMGSSSLTIPQTPLINSNLSSITHFEVSSTW 297

Query: 191 GGDLQRFEE--GGPPLLSPSSFLSQQCSGIEDENETLFMDHHKVVP 224
           GG+LQRFEE  GGPPLLSPSSFLS QCS IEDENETLFMDH  ++P
Sbjct: 298 GGELQRFEEGGGGPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLP 341

[Close]
BLAST of Lsi10G003710 vs. NCBI nr
Match: gi|659122042|ref|XP_008460940.1| (PREDICTED: transcription factor bHLH49 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 110/158 (69.62%), Postives = 121/158 (76.58%), Query Frame = 1 

Query: 80  MKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIGYV------ 139
           MKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE  F  +    L++ + ++      
Sbjct: 1   MKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVE--FLSMKVAALNHRVDFINVDDLL 60

Query: 140 ----FPTITA-NSSSYFNQLG-MGSSSQTVPQTPLINNNLSLITHFELSSTWGGDLQRFE 199
               F TIT  N SSY NQ G MGSSS  +PQTPLINNNLS IT FE+SSTWGG+LQRFE
Sbjct: 61  AKQMFSTITGDNCSSYDNQFGIMGSSSLAIPQTPLINNNLSSITQFEVSSTWGGELQRFE 120

Query: 200 E--GGPPLLSPSSFLSQQCSGIEDENETLFMDHHKVVP 224
           E  GGPPLLSPSSFLS QCS IEDENETLFMDH  ++P
Sbjct: 121 EGGGGPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLP 156

[Close]
BLAST of Lsi10G003710 vs. NCBI nr
Match: gi|700206679|gb|KGN61798.1| (hypothetical protein Csa_2G247590 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 74/94 (78.72%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 133 VFPTITANSSSYFNQLG-MGSSSQTVPQTPLINNNLSLITHFELSSTWGGDLQRFEE--G 192
           +FPTIT N SSY  QLG MGSSS T+PQTPLIN+NLS ITHFE+SSTWGG+LQRFEE  G
Sbjct: 203 MFPTITDNRSSYDTQLGIMGSSSLTIPQTPLINSNLSSITHFEVSSTWGGELQRFEEGGG 262

Query: 193 GPPLLSPSSFLSQQCSGIEDENETLFMDHHKVVP 224
           GPPLLSPSSFLS QCS IEDENETLFMDH  ++P
Sbjct: 263 GPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLP 296

[Close]
BLAST of Lsi10G003710 vs. NCBI nr
Match: gi|502130899|ref|XP_004500808.1| (PREDICTED: transcription factor bHLH63-like [Cicer arietinum])

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-16
Identity = 58/142 (40.85%), Postives = 78/142 (54.93%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIG 131
           RREKISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVE     L  +   +   
Sbjct: 167 RREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRHDFN 226

Query: 132 Y-------VFPTITANSSSYFNQLGMGSSSQTVPQTPLINNNLSLITHFELSSTW--GGD 191
                   VFP   AN++  F+ +G+ S   ++      N+    +++  L +T     D
Sbjct: 227 IDDLFEKEVFPNCDANAT--FSAMGISSELNSINPYVQFNSPQQFVSYGGLDNTGMNPSD 286

Query: 192 LQRFEEGGPPLLSPSSFLSQQC 205
           +        P+  P +F+   C
Sbjct: 287 MGLRRTISAPVSLPETFIDSSC 306

[Close]
BLAST of Lsi10G003710 vs. NCBI nr
Match: gi|223702402|gb|ACN21632.1| (putative basic helix-loop-helix protein BHLH7 [Lotus japonicus])

HSP 1 Score: 92.8 bits (229), Expect = 8.1e-16
Identity = 53/93 (56.99%), Postives = 60/93 (64.52%), Query Frame = 1 

Query: 72  RREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEKCFNYLTKIRLSNGIG 131
           RREKISERMKYLQ+LVPGCNKI GKAGMLDEIINYVQSLQ+QVE          LS  + 
Sbjct: 185 RREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVE---------FLSMKLA 244

Query: 132 YVFPTITANSSSYFNQLGMGSSSQTVPQTPLIN 165
            V P +  NS   F+++   S   T P   L N
Sbjct: 245 TVNPALEFNSDDLFDKVVFPSCDSTFPAINLTN 268

The following BLAST results are available for this feature:
BLAST of Lsi10G003710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH063_ARATH3.1e-1547.00Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1[more]
BEE2_ARATH1.2e-1484.44Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1[more]
HBI1_ARATH1.2e-1482.22Transcription factor HBI1 OS=Arabidopsis thaliana GN=HBI1 PE=1 SV=3[more]
BH076_ARATH1.2e-1438.96Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=1 SV=1[more]
BH049_ARATH3.4e-1486.36Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1[more]
BLAST of Lsi10G003710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIZ7_CUCSA9.6e-3278.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247590 PE=4 SV=1[more]
C0JP13_LOTJA5.6e-1656.99Putative basic helix-loop-helix protein BHLH7 OS=Lotus japonicus PE=4 SV=1[more]
M0ZJ90_SOLTU1.6e-1553.92Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000711 PE=4 SV=1[more]
M0ZJ88_SOLTU1.6e-1553.92Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000711 PE=4 SV=1[more]
G7J737_MEDTR2.1e-1543.26BHLH transcription factor OS=Medicago truncatula GN=MTR_3g116770 PE=4 SV=2[more]
BLAST of Lsi10G003710 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34530.11.7e-1647.00 cryptochrome-interacting basic-helix-loop-helix 1[more]
AT2G18300.36.6e-1682.22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G36540.16.6e-1684.44 BR enhanced expression 2[more]
AT1G26260.16.6e-1638.96 cryptochrome-interacting basic-helix-loop-helix 5[more]
AT1G68920.11.9e-1586.36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Lsi10G003710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778669339|ref|XP_004148863.2|4.0e-5572.89PREDICTED: transcription factor bHLH78 [Cucumis sativus][more]
gi|659122042|ref|XP_008460940.1|1.4e-4769.62PREDICTED: transcription factor bHLH49 [Cucumis melo][more]
gi|700206679|gb|KGN61798.1|1.4e-3178.72hypothetical protein Csa_2G247590 [Cucumis sativus][more]
gi|502130899|ref|XP_004500808.1|4.7e-1640.85PREDICTED: transcription factor bHLH63-like [Cicer arietinum][more]
gi|223702402|gb|ACN21632.1|8.1e-1656.99putative basic helix-loop-helix protein BHLH7 [Lotus japonicus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G003710.1Lsi10G003710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 73..116
score: 7.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 67..116
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 60..110
score: 10
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 72..124
score: 5.23
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 72..115
score: 2.2
NoneNo IPR availablePANTHERPTHR12565:SF126SUBFAMILY NOT NAMEDcoord: 72..115
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G003710Csa2G247590Cucumber (Chinese Long) v2culsiB093
Lsi10G003710CSPI02G12240Wild cucumber (PI 183967)cpilsiB091
Lsi10G003710CmaCh20G008470Cucurbita maxima (Rimu)cmalsiB507
Lsi10G003710CmoCh20G008570Cucurbita moschata (Rifu)cmolsiB491
Lsi10G003710CmoCh02G004000Cucurbita moschata (Rifu)cmolsiB533
Lsi10G003710ClCG11G004370Watermelon (Charleston Gray)lsiwcgB039
Lsi10G003710MELO3C013453.2Melon (DHL92) v3.6.1lsimedB068
Lsi10G003710MELO3C023299.2Melon (DHL92) v3.6.1lsimedB047
Lsi10G003710Cla97C11G211110Watermelon (97103) v2lsiwmbB043
Lsi10G003710Cla97C02G031850Watermelon (97103) v2lsiwmbB056
Lsi10G003710Bhi10G001613Wax gourdlsiwgoB080
Lsi10G003710Bhi05G001112Wax gourdlsiwgoB062
Lsi10G003710Cp4.1LG16g02370Cucurbita pepo (Zucchini)cpelsiB220
Lsi10G003710Cp4.1LG15g05430Cucurbita pepo (Zucchini)cpelsiB195
Lsi10G003710Cp4.1LG05g12530Cucurbita pepo (Zucchini)cpelsiB589
Lsi10G003710CsGy2G012230Cucumber (Gy14) v2cgyblsiB086
Lsi10G003710CsGy7G000110Cucumber (Gy14) v2cgyblsiB456
Lsi10G003710Carg19402Silver-seed gourdcarlsiB288
Lsi10G003710Carg22942Silver-seed gourdcarlsiB808
Lsi10G003710CsaV3_2G014750Cucumber (Chinese Long) v3cuclsiB104
Lsi10G003710CsaV3_7G000080Cucumber (Chinese Long) v3cuclsiB524
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi10G003710Lsi11G011120Bottle gourd (USVL1VR-Ls)lsilsiB021
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G003710Bottle gourd (USVL1VR-Ls)lsilsiB044
Lsi10G003710Cucumber (Gy14) v1cgylsiB145
Lsi10G003710Cucumber (Gy14) v1cgylsiB609
Lsi10G003710Cucurbita maxima (Rimu)cmalsiB548
Lsi10G003710Cucurbita moschata (Rifu)cmolsiB454
Lsi10G003710Cucurbita pepo (Zucchini)cpelsiB436
Lsi10G003710Wild cucumber (PI 183967)cpilsiB497
Lsi10G003710Cucumber (Chinese Long) v2culsiB489
Lsi10G003710Melon (DHL92) v3.5.1lsimeB045
Lsi10G003710Melon (DHL92) v3.5.1lsimeB064
Lsi10G003710Watermelon (Charleston Gray)lsiwcgB057
Lsi10G003710Watermelon (97103) v1lsiwmB079
Lsi10G003710Watermelon (97103) v1lsiwmB084
Lsi10G003710Silver-seed gourdcarlsiB425
Lsi10G003710Cucumber (Chinese Long) v3cuclsiB176