Cp4.1LG16g02370 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG16g02370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG16 : 4493168 .. 4495844 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAACAAACAAAACCCATTAACTCATTTGCGCCGCCGACCGGAGACATGTTCGCGGCGGAGACGACAGTGTCGGAAACACAAACGGGTCGAGTAAAATGGCGGCGAACAGACGGCGATTGCAGGAGCTTGTGCTCTGTCTCGACTCCGGCGAGCCGGGTCGAGCATTTTGAGGATCTGATAGCGGCCGGTGATTGGCCGGAGCTGCGAAGCAATCGGAGTGGATCGAGAAATCAGAAGAGGAAAACAGAGACATCGAAACAGAGCTCAAAAGATTGTAAAGAAGTTCAAAAATTGGATTATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCCGAAAGAGTAAGAATCCGGTCGTGTTTTTAAATATATTTTTAAATTTTTTAAAATTTTAATAATATTTTTAAAAAGAAATTCAAAAATATTATTATTGTAATACCACATTTACTATATATTAAAATTATAATATATGGACAAAAACTATATATTATATCGCTCATAAAAGAAAAATTATAATTTTTTTAAAAAAATATTTAAGAATTTTCGCGTTGTTTTTTAAAGTTTATAGATCTTTTTGAAATGTGATAATAATAGTTTCGTTCACATACTAACGATATAATATATATATTAATGAAATTTTTGAAAATTTAAGAATATTGTTGAAATATTTTTTTAAGGTTTAAGGGTATTTTTTAAACAATTTTATTTTCTATCTGAGACTAAAATAAAAAGTATTTTTTTAAATATTACTGAGTATTTTTTTAAAAAATGTGGTACTAATGTACCCGTTCATATATTAATTAGTATTTTTAAAATTTTAAAGAAATTAAAGTATTAATGAAAATTTTAAAAACTCGAAGATATAATCAAAATACTTTTAAAAGTTGTAAAACTATTCGTCAAACCGTATTTATAATATATATATATATATATATATATATATTTAAATTTTTTTTTTGAATGTATGATATATATTTTTTTAATTTAAATTGAATGGATATTTTTGAAACGTGATACTAATAATTTTGTTCATACCGTAAAAGTTTTTCTTTTTTTTTAAGATTTAAAAAATATTTAAAGGTATTTTTGAAACAAAGTATCTGAAATGACGGGAATTTGCAGGTGAGGAGAGAGAAGATAAGTAAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGCAACAAAATCACTGGAAAAGTTGGAATGCTTGATGAAATTATAAACTATGTTCAATCTCTACAGCAACAAGTCGAGGTCATAAATTCATCCAAATCAATAAATTAACAATTTTTTTTTTTTTTTTCACTAAAAGTTTTGATTTTTTTTTTTTTTTTTTTTTTTTTAGTTCTTATCCATGAACTTGGCCGCTTTGAATCACGAATTCGATCTCGTCAATGGCCATGACCTCTTCGTCGAGCAGGTGAAGATTGTTCGTTTAAAAAATACTCTTGAACTTTCGAAGTTTCATTCATTCGTACCCTTAAATTCTTTAGAAATTTCAAAAAAGTCATTAATTTTTTATATATTTACGGTCCCGATAAGGGTAATTTTGAATTTTTTTGAAAATGGAGGTAAGAAGTTTTAAAGGTATTTTTATTAATTTAGCGTTAAGTATTTAACTAAGCTTAGGTTGATGTTTATTCGATTGTGTTAAAATATATATTATTTTGCGAGTAATTAATAAAATATAGGGTAAATTACAGTTTTGACCTTTGAAGTTTGAGCAACGTGATGATCGTGTTCCTATTTCTTCTAGAAACCTCATCTAGATTTAGGCAATGAGTGCATGTTCTGTGTCACTATTTGGGGGACGATAGCAGGAGATGGAAGCCAGCCCAAACGTATTGCTAGTAGATATTGTCCTCAAGGTTCTAAAATGTATATATTAGGGAGACGTTTCCACACCCTTCTAAGGAATATTTCGTTCAGTCTCTCCGGTCGATATGAGATCCCACACATCACCACTTTTTATTATAAAAAAGACGTCACGTCAAGAGACCAAACTAGATGATTTTCTGACCTCGAGAATAAGATCGTTCAATTTTAAAACCTAGAGACAAAATATCGGGATGTTCAAATTTAGAGACTAAAAATCTAAATAATTACTTAAAAAAACAATAGTTTTCATTCAACGTTCTAATAAATTTTCCGTCAAAATTTACAGGTGTTTCCGACGATAGAAATCTCACCCGAAACGGCTAATTACTCGTCCAACTTTAATGAACTCGAAATCGGCTCGAGCTCAAGCTCTTTAACAGTCCCAGAAACTTCATTTTTCAACTCATCTTCTATTACTGTAATTTCCTTTCTCAATTTCTTCTCTCAGCTTCGAATTCTTCTTTTGTTTTTTGCTTTAATGGTTTTTTTCTTCTTTTCTATAGCATTTTGAACACTCTTCAACTTGGGGAGGTGATTTACAGAGTCTTCATGGTATGAGCTTTGAAGAAGAAGGACCGCCATTGTTGTCGCCATCGAGCTTTTTAACGCAGCAATGTTCATACATTGAAGATGAAAATGAAACATTTCTAGACCAAAAACATGTTTCATTTTAACGTTAAATTAGTATTTCAGTGTCGAGTTATGGTAGAAATATTGTTTAAATGCTAATTTAGTGTCATATGTTTTATTTATATTAATAAAAATTATTATCGGGTTT

mRNA sequence

CAACAACAAACAAAACCCATTAACTCATTTGCGCCGCCGACCGGAGACATGTTCGCGGCGGAGACGACAGTGTCGGAAACACAAACGGGTCGAGTAAAATGGCGGCGAACAGACGGCGATTGCAGGAGCTTGTGCTCTGTCTCGACTCCGGCGAGCCGGGTCGAGCATTTTGAGGATCTGATAGCGGCCGGTGATTGGCCGGAGCTGCGAAGCAATCGGAGTGGATCGAGAAATCAGAAGAGGAAAACAGAGACATCGAAACAGAGCTCAAAAGATTGTAAAGAAGTTCAAAAATTGGATTATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCCGAAAGAGTGAGGAGAGAGAAGATAAGTAAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGCAACAAAATCACTGGAAAAGTTGGAATGCTTGATGAAATTATAAACTATGTTCAATCTCTACAGCAACAAGTCGAGGTGTTTCCGACGATAGAAATCTCACCCGAAACGGCTAATTACTCGTCCAACTTTAATGAACTCGAAATCGGCTCGAGCTCAAGCTCTTTAACAGTCCCAGAAACTTCATTTTTCAACTCATCTTCTATTACTCATTTTGAACACTCTTCAACTTGGGGAGGTGATTTACAGAGTCTTCATGGTATGAGCTTTGAAGAAGAAGGACCGCCATTGTTGTCGCCATCGAGCTTTTTAACGCAGCAATGTTCATACATTGAAGATGAAAATGAAACATTTCTAGACCAAAAACATGTTTCATTTTAACGTTAAATTAGTATTTCAGTGTCGAGTTATGGTAGAAATATTGTTTAAATGCTAATTTAGTGTCATATGTTTTATTTATATTAATAAAAATTATTATCGGGTTT

Coding sequence (CDS)

ATGTTCGCGGCGGAGACGACAGTGTCGGAAACACAAACGGGTCGAGTAAAATGGCGGCGAACAGACGGCGATTGCAGGAGCTTGTGCTCTGTCTCGACTCCGGCGAGCCGGGTCGAGCATTTTGAGGATCTGATAGCGGCCGGTGATTGGCCGGAGCTGCGAAGCAATCGGAGTGGATCGAGAAATCAGAAGAGGAAAACAGAGACATCGAAACAGAGCTCAAAAGATTGTAAAGAAGTTCAAAAATTGGATTATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACCGACAGCCATAGTCTTGCCGAAAGAGTGAGGAGAGAGAAGATAAGTAAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGCAACAAAATCACTGGAAAAGTTGGAATGCTTGATGAAATTATAAACTATGTTCAATCTCTACAGCAACAAGTCGAGGTGTTTCCGACGATAGAAATCTCACCCGAAACGGCTAATTACTCGTCCAACTTTAATGAACTCGAAATCGGCTCGAGCTCAAGCTCTTTAACAGTCCCAGAAACTTCATTTTTCAACTCATCTTCTATTACTCATTTTGAACACTCTTCAACTTGGGGAGGTGATTTACAGAGTCTTCATGGTATGAGCTTTGAAGAAGAAGGACCGCCATTGTTGTCGCCATCGAGCTTTTTAACGCAGCAATGTTCATACATTGAAGATGAAAATGAAACATTTCTAGACCAAAAACATGTTTCATTTTAA

Protein sequence

MFAAETTVSETQTGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLIAAGDWPELRSNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFNELEIGSSSSSLTVPETSFFNSSSITHFEHSSTWGGDLQSLHGMSFEEEGPPLLSPSSFLTQQCSYIEDENETFLDQKHVSF
BLAST of Cp4.1LG16g02370 vs. Swiss-Prot
Match: HBI1_ARATH (Transcription factor HBI1 OS=Arabidopsis thaliana GN=HBI1 PE=1 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-30
Identity = 84/178 (47.19%), Postives = 108/178 (60.67%), Query Frame = 1

Query: 57  RSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKY 116
           +S   N +  ++TSK++SK   E QKLDY+HVRARRGQATD HSLAER RREKISK+MKY
Sbjct: 154 KSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKY 213

Query: 117 LQNLVPGCNKITGKVGMLDEIINYVQSLQQQVEVF--------PTIEISPETAN---YSS 176
           LQ++VPGCNK+TGK GMLDEIINYVQ LQ+QVE          P +E++ E  +   + +
Sbjct: 214 LQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVKQFQA 273

Query: 177 NFNELEIGSSSSSLTVP----------ETSFFNSSSITHFE-HSSTWGGDLQSLHGMS 213
            F  +     S  + VP          + S  N +  T  E  S +W    QSL+  S
Sbjct: 274 YFTNVVASKQSIMVDVPLFPLDQQGSLDLSAINPNQTTSIEAPSGSWETQSQSLYNTS 331

BLAST of Cp4.1LG16g02370 vs. Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-29
Identity = 79/156 (50.64%), Postives = 104/156 (66.67%), Query Frame = 1

Query: 5   ETTVSETQTGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLIAAGDWPE--LRSNRSGS-- 64
           ETT+    TG  K R+ D + +  C+       +   +DL+  G+  +  +    +GS  
Sbjct: 83  ETTLG---TGNFKKRKFDTETKD-CNEKKKKMTMNR-DDLVEEGEEEKSKITEQNNGSTK 142

Query: 65  -------RNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKR 124
                  + +K +   S  SSK  KE++K DY+HVRARRGQATDSHS+AERVRREKIS+R
Sbjct: 143 SIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISER 202

Query: 125 MKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVE 150
           MK+LQ+LVPGC+KITGK GMLDEIINYVQSLQ+Q+E
Sbjct: 203 MKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233

BLAST of Cp4.1LG16g02370 vs. Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-27
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1

Query: 13  TGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLIAAGDWPELRSNRSGSRNQKRKTETSKQ 72
           +   K R+ +G   S  + S  + + E   D     +  E R++     +  +K+ + KQ
Sbjct: 232 SSNTKKRKRNGQKNSEAAQSHRSQQSEEEPD----NNGDEKRNDEQSPNSPGKKSNSGKQ 291

Query: 73  SSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCNKITGKVG 132
             K   +  K  Y+HVRARRGQAT+SHSLAERVRREKIS+RMK+LQ+LVPGCNK+TGK  
Sbjct: 292 QGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAV 351

Query: 133 MLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFN----------ELEIGSSSSSLTVP 186
           MLDEIINYVQSLQ+QVE    + +   T N   +FN          +L  GSSS++   P
Sbjct: 352 MLDEIINYVQSLQRQVEF---LSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPP 407

BLAST of Cp4.1LG16g02370 vs. Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.3e-26
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 66  KTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCN 125
           K +++  +++   E+QK DY+HVRARRG+ATD HSLAER RREKISK+MK LQ++VPGCN
Sbjct: 119 KGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCN 178

Query: 126 KITGKVGMLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFNELEIGSSSSSLTVPETS 185
           K+TGK GMLDEIINYVQSLQQQVE F ++++S        + ++L      +  T P   
Sbjct: 179 KVTGKAGMLDEIINYVQSLQQQVE-FLSMKLSVINPELECHIDDLSAKQFQAYFTGPPEG 238

Query: 186 FFNSSSITHF 196
               S +  F
Sbjct: 239 DSKQSIMADF 247

BLAST of Cp4.1LG16g02370 vs. Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-26
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 1

Query: 60  SRNQKRKTE--TSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYL 119
           S N K   E   SK+  +  KE    DY+HVRARRGQATDSHSLAERVRREKIS+RM+ L
Sbjct: 106 SNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTL 165

Query: 120 QNLVPGCNKITGKVGMLDEIINYVQSLQQQVEV--FPTIEISPETANYSSNFNELEIGSS 179
           QNLVPGC+K+TGK  MLDEIINYVQ+LQ QVE        ISP   ++ S+ + L + S 
Sbjct: 166 QNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVYDFGSDLDGLILQSE 225

Query: 180 SSSLTVPETSFFNSSSIT 194
             S  V  TSF N+   T
Sbjct: 226 MGSPEV-GTSFTNAMPTT 242

BLAST of Cp4.1LG16g02370 vs. TrEMBL
Match: A0A124SHV3_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010887 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-32
Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 1

Query: 67  TETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCNK 126
           TETS +      E +K +Y+HVRARRGQATDSHSLAERVRREKIS+RMKYLQ+LVPGCNK
Sbjct: 164 TETSSKEKPKLTEAKKQEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNK 223

Query: 127 ITGKVGMLDEIINYVQSLQQQVEVFPTIEI-----SPETAN--YSSNFNELEIG------ 186
           ITGK GMLDEIINYVQSLQ+QVE+F + E+     S E AN  Y    + LE+G      
Sbjct: 224 ITGKAGMLDEIINYVQSLQRQVEMFVSGEVSAVGYSSEMANSTYLQLNSLLEMGTNPIDM 283

Query: 187 ---SSSSSLTVPETSFFNSSSITHFEHSSTWGGDLQSLHGMSFEEE 217
              S  S +++PET F  SS     + + TW  DLQ+L+ M  + +
Sbjct: 284 VLRSIGSPVSIPET-FVVSSCFNQIQPTVTWDADLQNLYRMELQHD 328

BLAST of Cp4.1LG16g02370 vs. TrEMBL
Match: A0A0D2TUJ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036400 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-32
Identity = 86/172 (50.00%), Postives = 121/172 (70.35%), Query Frame = 1

Query: 55  SNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRM 114
           +N+S +  ++   + SK++SK   EVQK D++HVRARRGQATDSHSLAERVRREKIS+RM
Sbjct: 194 TNKSSNNKKEASGDASKENSK-VSEVQKPDFIHVRARRGQATDSHSLAERVRREKISERM 253

Query: 115 KYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFNELEI-- 174
           KYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE  P  ++ P         N  ++  
Sbjct: 254 KYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFNPIQQVVP-CCGVEMGINSPDMTL 313

Query: 175 -GSSSSSLTVPETSFFNSSSIT--------HFEHSSTWGGDLQSLHGMSFEE 216
             + S+ +++P+ SF +SS +T          + ++TW  +LQ+L+ ++F++
Sbjct: 314 RRTISAPVSIPDASFLDSSCLTMHQCSAMQQIQPTATWDVELQNLYNVAFDQ 363

BLAST of Cp4.1LG16g02370 vs. TrEMBL
Match: A0A061DZ57_THECC (Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 6 (Fragment) OS=Theobroma cacao GN=TCM_006871 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = 1

Query: 55  SNRSGSRNQKRKTETSKQSSKD---CKEVQKLDYVHVRARRGQATDSHSLAERVRREKIS 114
           +N+S S N   K E+S  +SK+     EVQK DY+HVRARRGQATDSHSLAERVRREKIS
Sbjct: 202 TNKSSSNNNNNKKESSTDTSKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKIS 261

Query: 115 KRMKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVE--------VFPTIEISPET--- 174
           +RMKYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE        V P ++ + E    
Sbjct: 262 ERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVENLFA 321

Query: 175 -----ANYSSNFNELEIGSS----------SSSLTVPETSFFNSSSITHFEHSSTW 202
                  +  +   LE+G +          S+ +++P+ SF +SS     + S+TW
Sbjct: 322 KEVSPVQHVVSCCGLEMGMNTPDMAPRRTISAPVSIPDASFLDSSCFPQIQPSATW 377

BLAST of Cp4.1LG16g02370 vs. TrEMBL
Match: A0A061DYZ2_THECC (Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 5 OS=Theobroma cacao GN=TCM_006871 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.6e-30
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = 1

Query: 55  SNRSGSRNQKRKTETSKQSSKD---CKEVQKLDYVHVRARRGQATDSHSLAERVRREKIS 114
           +N+S S N   K E+S  +SK+     EVQK DY+HVRARRGQATDSHSLAERVRREKIS
Sbjct: 202 TNKSSSNNNNNKKESSTDTSKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKIS 261

Query: 115 KRMKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVEV 151
           +RMKYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE+
Sbjct: 262 ERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEL 300

BLAST of Cp4.1LG16g02370 vs. TrEMBL
Match: A0A061DZ54_THECC (Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 1 OS=Theobroma cacao GN=TCM_006871 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.9e-30
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1

Query: 55  SNRSGSRNQKRKTETSKQSSKD---CKEVQKLDYVHVRARRGQATDSHSLAERVRREKIS 114
           +N+S S N   K E+S  +SK+     EVQK DY+HVRARRGQATDSHSLAERVRREKIS
Sbjct: 202 TNKSSSNNNNNKKESSTDTSKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKIS 261

Query: 115 KRMKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVE 150
           +RMKYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE
Sbjct: 262 ERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVE 299

BLAST of Cp4.1LG16g02370 vs. TAIR10
Match: AT2G18300.3 (AT2G18300.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-31
Identity = 84/178 (47.19%), Postives = 108/178 (60.67%), Query Frame = 1

Query: 57  RSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKY 116
           +S   N +  ++TSK++SK   E QKLDY+HVRARRGQATD HSLAER RREKISK+MKY
Sbjct: 154 KSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKY 213

Query: 117 LQNLVPGCNKITGKVGMLDEIINYVQSLQQQVEVF--------PTIEISPETAN---YSS 176
           LQ++VPGCNK+TGK GMLDEIINYVQ LQ+QVE          P +E++ E  +   + +
Sbjct: 214 LQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVKQFQA 273

Query: 177 NFNELEIGSSSSSLTVP----------ETSFFNSSSITHFE-HSSTWGGDLQSLHGMS 213
            F  +     S  + VP          + S  N +  T  E  S +W    QSL+  S
Sbjct: 274 YFTNVVASKQSIMVDVPLFPLDQQGSLDLSAINPNQTTSIEAPSGSWETQSQSLYNTS 331

BLAST of Cp4.1LG16g02370 vs. TAIR10
Match: AT4G34530.1 (AT4G34530.1 cryptochrome-interacting basic-helix-loop-helix 1)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-30
Identity = 79/156 (50.64%), Postives = 104/156 (66.67%), Query Frame = 1

Query: 5   ETTVSETQTGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLIAAGDWPE--LRSNRSGS-- 64
           ETT+    TG  K R+ D + +  C+       +   +DL+  G+  +  +    +GS  
Sbjct: 83  ETTLG---TGNFKKRKFDTETKD-CNEKKKKMTMNR-DDLVEEGEEEKSKITEQNNGSTK 142

Query: 65  -------RNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKR 124
                  + +K +   S  SSK  KE++K DY+HVRARRGQATDSHS+AERVRREKIS+R
Sbjct: 143 SIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISER 202

Query: 125 MKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVE 150
           MK+LQ+LVPGC+KITGK GMLDEIINYVQSLQ+Q+E
Sbjct: 203 MKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233

BLAST of Cp4.1LG16g02370 vs. TAIR10
Match: AT1G68920.1 (AT1G68920.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 81/183 (44.26%), Postives = 108/183 (59.02%), Query Frame = 1

Query: 13  TGRVKWRRTDGDCRSLCSVSTPASRVEHFEDLIAAGDWPELRSNRSGSRNQKRKTETSKQ 72
           +   K R+ +G   S  + S  + + E   D     +  E R++     +  +K+ + KQ
Sbjct: 232 SSNTKKRKRNGQKNSEAAQSHRSQQSEEEPD----NNGDEKRNDEQSPNSPGKKSNSGKQ 291

Query: 73  SSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCNKITGKVG 132
             K   +  K  Y+HVRARRGQAT+SHSLAERVRREKIS+RMK+LQ+LVPGCNK+TGK  
Sbjct: 292 QGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAV 351

Query: 133 MLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFN----------ELEIGSSSSSLTVP 186
           MLDEIINYVQSLQ+QVE    + +   T N   +FN          +L  GSSS++   P
Sbjct: 352 MLDEIINYVQSLQRQVEF---LSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPP 407

BLAST of Cp4.1LG16g02370 vs. TAIR10
Match: AT4G36540.1 (AT4G36540.1 BR enhanced expression 2)

HSP 1 Score: 119.8 bits (299), Expect = 2.4e-27
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 66  KTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCN 125
           K +++  +++   E+QK DY+HVRARRG+ATD HSLAER RREKISK+MK LQ++VPGCN
Sbjct: 119 KGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCN 178

Query: 126 KITGKVGMLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFNELEIGSSSSSLTVPETS 185
           K+TGK GMLDEIINYVQSLQQQVE F ++++S        + ++L      +  T P   
Sbjct: 179 KVTGKAGMLDEIINYVQSLQQQVE-FLSMKLSVINPELECHIDDLSAKQFQAYFTGPPEG 238

Query: 186 FFNSSSITHF 196
               S +  F
Sbjct: 239 DSKQSIMADF 247

BLAST of Cp4.1LG16g02370 vs. TAIR10
Match: AT5G50915.1 (AT5G50915.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-27
Identity = 77/138 (55.80%), Postives = 91/138 (65.94%), Query Frame = 1

Query: 60  SRNQKRKTE--TSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYL 119
           S N K   E   SK+  +  KE    DY+HVRARRGQATDSHSLAERVRREKIS+RM+ L
Sbjct: 106 SNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTL 165

Query: 120 QNLVPGCNKITGKVGMLDEIINYVQSLQQQVEV--FPTIEISPETANYSSNFNELEIGSS 179
           QNLVPGC+K+TGK  MLDEIINYVQ+LQ QVE        ISP   ++ S+ + L + S 
Sbjct: 166 QNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVYDFGSDLDGLILQSE 225

Query: 180 SSSLTVPETSFFNSSSIT 194
             S  V  TSF N+   T
Sbjct: 226 MGSPEV-GTSFTNAMPTT 242

BLAST of Cp4.1LG16g02370 vs. NCBI nr
Match: gi|778669339|ref|XP_004148863.2| (PREDICTED: transcription factor bHLH78 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 2.3e-48
Identity = 126/203 (62.07%), Postives = 140/203 (68.97%), Query Frame = 1

Query: 73  SSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCNKITGKVG 132
           +SK  +E++K+DYVHVRARRG+ATDSHSLAER RREKIS+RMKYLQNLVPGCNKI GK G
Sbjct: 146 NSKGSEEIKKMDYVHVRARRGKATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAG 205

Query: 133 MLDEIINYVQSLQQQVE-------------------------VFPTIEISPETANYSSNF 192
           MLDEIINYVQSLQQQVE                         +FPTI     T N SS  
Sbjct: 206 MLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQMFPTI-----TDNRSSYD 265

Query: 193 NELEIGSSSSSLTVPETSFFNS--SSITHFEHSSTWGGDLQSLHGMSFEE--EGPPLLSP 246
            +L I   SSSLT+P+T   NS  SSITHFE SSTWGG+LQ      FEE   GPPLLSP
Sbjct: 266 TQLGI-MGSSSLTIPQTPLINSNLSSITHFEVSSTWGGELQ-----RFEEGGGGPPLLSP 325

BLAST of Cp4.1LG16g02370 vs. NCBI nr
Match: gi|976926884|gb|KVI10728.1| (hypothetical protein Ccrd_010887 [Cynara cardunculus var. scolymus])

HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32
Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 1

Query: 67  TETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRMKYLQNLVPGCNK 126
           TETS +      E +K +Y+HVRARRGQATDSHSLAERVRREKIS+RMKYLQ+LVPGCNK
Sbjct: 164 TETSSKEKPKLTEAKKQEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNK 223

Query: 127 ITGKVGMLDEIINYVQSLQQQVEVFPTIEI-----SPETAN--YSSNFNELEIG------ 186
           ITGK GMLDEIINYVQSLQ+QVE+F + E+     S E AN  Y    + LE+G      
Sbjct: 224 ITGKAGMLDEIINYVQSLQRQVEMFVSGEVSAVGYSSEMANSTYLQLNSLLEMGTNPIDM 283

Query: 187 ---SSSSSLTVPETSFFNSSSITHFEHSSTWGGDLQSLHGMSFEEE 217
              S  S +++PET F  SS     + + TW  DLQ+L+ M  + +
Sbjct: 284 VLRSIGSPVSIPET-FVVSSCFNQIQPTVTWDADLQNLYRMELQHD 328

BLAST of Cp4.1LG16g02370 vs. NCBI nr
Match: gi|763812321|gb|KJB79173.1| (hypothetical protein B456_013G036400 [Gossypium raimondii])

HSP 1 Score: 147.5 bits (371), Expect = 3.1e-32
Identity = 86/172 (50.00%), Postives = 121/172 (70.35%), Query Frame = 1

Query: 55  SNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKRM 114
           +N+S +  ++   + SK++SK   EVQK D++HVRARRGQATDSHSLAERVRREKIS+RM
Sbjct: 194 TNKSSNNKKEASGDASKENSK-VSEVQKPDFIHVRARRGQATDSHSLAERVRREKISERM 253

Query: 115 KYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVEVFPTIEISPETANYSSNFNELEI-- 174
           KYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE  P  ++ P         N  ++  
Sbjct: 254 KYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFNPIQQVVP-CCGVEMGINSPDMTL 313

Query: 175 -GSSSSSLTVPETSFFNSSSIT--------HFEHSSTWGGDLQSLHGMSFEE 216
             + S+ +++P+ SF +SS +T          + ++TW  +LQ+L+ ++F++
Sbjct: 314 RRTISAPVSIPDASFLDSSCLTMHQCSAMQQIQPTATWDVELQNLYNVAFDQ 363

BLAST of Cp4.1LG16g02370 vs. NCBI nr
Match: gi|802564213|ref|XP_012067265.1| (PREDICTED: transcription factor bHLH63 isoform X2 [Jatropha curcas])

HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32
Identity = 96/199 (48.24%), Postives = 127/199 (63.82%), Query Frame = 1

Query: 54  RSNRSGSRNQKRKTETSKQSSKDCKEVQKLDYVHVRARRGQATDSHSLAERVRREKISKR 113
           ++N S + N++   ETSK +SK   E+QK DY+HVRARRGQATDSHSLAERVRREKIS+R
Sbjct: 190 KTNSSKNINKENSAETSKDNSK-VTEIQKPDYIHVRARRGQATDSHSLAERVRREKISER 249

Query: 114 MKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVE--------VFPTIEISPETANYSS 173
           MKYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE        V P ++ + +   ++ 
Sbjct: 250 MKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDNL-FAK 309

Query: 174 NFNE------------------LEIG-----------SSSSSLTVPETSFFNSSSITHFE 216
            FN                   L+IG           + S+ +++PE  F +SS  T  +
Sbjct: 310 EFNPVQQQQQHQQQQQLVTCCGLDIGINNPSDIVLRRTISAPISMPE-MFVDSSCFTQIQ 369

BLAST of Cp4.1LG16g02370 vs. NCBI nr
Match: gi|590685712|ref|XP_007042174.1| (Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 6, partial [Theobroma cacao])

HSP 1 Score: 141.0 bits (354), Expect = 2.9e-30
Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = 1

Query: 55  SNRSGSRNQKRKTETSKQSSKD---CKEVQKLDYVHVRARRGQATDSHSLAERVRREKIS 114
           +N+S S N   K E+S  +SK+     EVQK DY+HVRARRGQATDSHSLAERVRREKIS
Sbjct: 202 TNKSSSNNNNNKKESSTDTSKENSKVSEVQKPDYIHVRARRGQATDSHSLAERVRREKIS 261

Query: 115 KRMKYLQNLVPGCNKITGKVGMLDEIINYVQSLQQQVE--------VFPTIEISPET--- 174
           +RMKYLQ+LVPGCNKITGK GMLDEIINYVQSLQ+QVE        V P ++ + E    
Sbjct: 262 ERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVENLFA 321

Query: 175 -----ANYSSNFNELEIGSS----------SSSLTVPETSFFNSSSITHFEHSSTW 202
                  +  +   LE+G +          S+ +++P+ SF +SS     + S+TW
Sbjct: 322 KEVSPVQHVVSCCGLEMGMNTPDMAPRRTISAPVSIPDASFLDSSCFPQIQPSATW 377

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HBI1_ARATH3.8e-3047.19Transcription factor HBI1 OS=Arabidopsis thaliana GN=HBI1 PE=1 SV=3[more]
BH063_ARATH4.1e-2950.64Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1[more]
BH049_ARATH3.9e-2744.26Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1[more]
BEE2_ARATH4.3e-2651.54Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1[more]
BH137_ARATH5.6e-2655.80Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A124SHV3_CYNCS2.1e-3254.82Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_010887 PE=4 ... [more]
A0A0D2TUJ2_GOSRA2.1e-3250.00Uncharacterized protein OS=Gossypium raimondii GN=B456_013G036400 PE=4 SV=1[more]
A0A061DZ57_THECC2.0e-3050.57Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 6 (Fragment)... [more]
A0A061DYZ2_THECC7.6e-3074.75Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 5 OS=Theobro... [more]
A0A061DZ54_THECC9.9e-3075.51Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 1 OS=Theobro... [more]
Match NameE-valueIdentityDescription
AT2G18300.32.1e-3147.19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G34530.12.3e-3050.64 cryptochrome-interacting basic-helix-loop-helix 1[more]
AT1G68920.12.2e-2844.26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G36540.12.4e-2751.54 BR enhanced expression 2[more]
AT5G50915.13.2e-2755.80 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778669339|ref|XP_004148863.2|2.3e-4862.07PREDICTED: transcription factor bHLH78 [Cucumis sativus][more]
gi|976926884|gb|KVI10728.1|3.1e-3254.82hypothetical protein Ccrd_010887 [Cynara cardunculus var. scolymus][more]
gi|763812321|gb|KJB79173.1|3.1e-3250.00hypothetical protein B456_013G036400 [Gossypium raimondii][more]
gi|802564213|ref|XP_012067265.1|4.0e-3248.24PREDICTED: transcription factor bHLH63 isoform X2 [Jatropha curcas][more]
gi|590685712|ref|XP_007042174.1|2.9e-3050.57Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 6, partial [... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042545 cell wall modification
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005618 cell wall
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0030599 pectinesterase activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g02370.1Cp4.1LG16g02370.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 94..149
score: 1.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 98..145
score: 5.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 100..150
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 94..144
score: 14
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 92..153
score: 2.88
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 61..149
score: 2.7
NoneNo IPR availablePANTHERPTHR12565:SF149SUBFAMILY NOT NAMEDcoord: 61..149
score: 2.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g02370Cp4.1LG15g05430Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG16g02370Cp4.1LG04g00930Cucurbita pepo (Zucchini)cpecpeB307
Cp4.1LG16g02370Cp4.1LG05g12530Cucurbita pepo (Zucchini)cpecpeB309