Lsi10G002120 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G002120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding region RNP-1
Location	chr10 : 3477849 .. 3482226 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAAGTGAAGTTTCCTGACATTACTAATTTTCCTGCTCTTTATCTCTCCCACGCTTTGTCTGGTGATACTCCCTTCTTTCAAATTGCTTCCAAGCTCCAACCTCTACAACTTCCTCTTTCTCCAAGAAATTCGTCGAATTCTTCGATCATTAGCTATGCAGGTAACAAATCCCTCAATTTCCACTTCTTTCTTTCAACTTTTGCTCTCTGATTTCCGTAATCAACTTCAAATTTTCCTTGTTTTTTCATCTTCATTTCTTCTGTTCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCATATAGAGATTCAATGGTAGGTGATTAACTCTCTGTTCCTGTAAACAGAGTTTCAAAAAGTGGTAAAAGAGAAGATGTGCGTGATTGATTGATTAATTATGATTCTCTTTTCTATGCTGCTGATTTAGTTTTAGGTTTCTTATTGTTTGGCTTCCGAGGGAAAGTAGTTAGCAATTAAGCATGCGAGTTTTGTGGATTTCTCTTTATTTTTCTTTTTGATTCTTGTTTTTCTTTATCAATAATAAGTGTGAGGGTTGTAATTGTTATAGCTGACAAGTAATTAAGATTGACAAGTAATTAAGATTGTTATTCTAATTTTTTTCTTGTTGCTGCAGTGAACAAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGTATTTCATTATCTCGATTCTCTTTCATTTTCACGAAGTCAGTTATTGGGATGTGTTTGTTGAACTTGTGGTCTTACAATGAATGTCAAAGAGCGTCATGTTGAAGTTTGGTTCATGTGGGTCTACATTTGGCTGTGTTTACCTTCTTATTTAAGCCATTTGATTTGTTAGTGTCTAGTTAGTTCTATAGCCTCTTTACTTTTATTTCCTTCATTTTCGTGCCATTAGTTTTGATTGAATTGAAAAGTGAAGGATGAGTAGAATCTCGGTTTATTTTATTTTATTTTTTTTAATGAAAATACTTTTTCTTCATAAGAAGATTTTTCTACACGTAATCTCAAACATACAGGAGAAATTTCTTTAGAGCTGTCATATACGATCTTTTAGTTGAAGCTACCCTGCTTTTGCATTTTGTATTTCTCATCACCACCCCACTCTTTCTAATAAAATAATACTAATATTAAATCATAGATTAGTTATCAAACTAATGTTAAAAGTGGCATGCTCTGGGATAGTTCTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGTGAAGAAAGAAAGAAAGAAGAAGAAGAAGAAGAAGATGATGAGAGTTGAGTAATGGTTGAAACTTGAAAGTGAAAACTATTAAACTGAACTTTATGAATAAACATCTGCCTTGCTTTTACTTTTTGTTACGAATAAAAGCATTAGTGAGAATTACTAAATGGACATGTTTCTAGAAAAAGAAGGAAGCTAATACCTTTTCTTTGCATGATCATTTCTTTATGCAATAGTGGAATTATTTGATATTTTCATCACGCAATACTGGAAATATACCTTTTCTTCTTCATATCTGGCTGATGCCATAAGCTACTATAAACAATTTCTATTGTTTATTTGTTTGTTATTTAGGGAGCAACTATTGTAGATCAGATCGTGAGCATATCTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGTATTATTCTTGTGTTTGAATATTTTTCCAGGCCCGTCTAGCTTATTATATATTCAATATTTTAAATTTTCTATGTTTGCAGGAAGTACGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGTAAATGTGTTGACCTCAATCTATGAATATCAAGTATTTGTGTAGCATATTCTTTCACGTTGATCTACTATTTAAAGAAAAACCAAGGCGGGGGAGTTTCATCAAATGGGAAAGTTTAGGACATGTTTCATGTTTTCTGTATTTAGATTTTCTTAAATTGATGTAGATGGATGATAAGTAAAACCTCAATTGAATGCATGTCGTCATGGACCTCACTACACTTGCTAAAACCATGGTGAAGAACTGGTGAAACAGTTTCACACTTTTAGTTTTCATGTGGATCTTCATTTCCGTGATTTGTGCACCTTTTCTTTTTTTCCCACCTTAAATCTTTTTGTGTTTATAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTAGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGGTTAACAGCTAGTGCATCTGCAAAGGTATTATCCTTTGACAGAAGGGTTGGGCTCACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTAGATCAAAAACTTCACGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGTTCTGCTGTCAAAACAAGCAAGTATGAATCATCCTTCTTGAGGAAACATACGTTGCCATTTTTATTTGCACTGCTCTATTTTGTTAGCTTATCCCCTAAGAAATTTTTACTTCCCTTCTGCTATCTTCAAATTTTAGAACTTGAATATTCTCCACTCCTAGCAAGAAAGCAGAAAATTAGATTTCTAGAATAGCTCCCAAACAACTCCCTAGTGTTTCAACTTCTTGAGAACTTTAGATCATCGTATATTTCTTTTATCCCAAATAAATTACAAATGGATCTACTATTCGTTCAGAATAAATCAGTTATGACAATAGACGGAAGTGAATTAATTGAATTGTTTCACTCCATCTTGGCGTTGAACAGGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAAGTCGCAAAAGCAGGGCAGGCAGCAGGTACGAAAACCAGAGAGAAGTTCAATTTGGCTATGTCAAACTTAGTTTCAAAGGTGCGTTTATGAAACCCTTTTATTTAAGTCAGAATTCTTCGAAAATCGCTTTGCTGTGAGTAACTTAAGGACAAGCTTAGGAACAACAGTTTTGATGAATTAGTTCTCAAATATATTTTTCTAGTCTTTTGTTTTATGCATTAGCCAAAACCATGCCAAAAGAAGAGAAAGCTCCCTAA

mRNA sequence

TGGAAAGTGAAGTTTCCTGACATTACTAATTTTCCTGCTCTTTATCTCTCCCACGCTTTGTCTGGTGATACTCCCTTCTTTCAAATTGCTTCCAAGCTCCAACCTCTACAACTTCCTCTTTCTCCAAGAAATTCGTCGAATTCTTCGATCATTAGCTATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGATGAACAAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACTATTGTAGATCAGATCGTGAGCATATCTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGAAGTACGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTAGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGGTTAACAGCTAGTGCATCTGCAAAGGTATTATCCTTTGACAGAAGGGTTGGGCTCACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTAGATCAAAAACTTCACGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGTTCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAAGTCGCAAAAGCAGGGCAGGCAGCAGCCAAAACCATGCCAAAAGAAGAGAAAGCTCCCTAA

Coding sequence (CDS)

ATGCAGTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGATGAACAAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACTATTGTAGATCAGATCGTGAGCATATCTCCTGCTGAAAATCATGTACCAAGAAGAGAAATGCAGGAAGTACGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTAGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGACGAAAAACATCGGTTAACAGCTAGTGCATCTGCAAAGGTATTATCCTTTGACAGAAGGGTTGGGCTCACAGAGAAATTAACAGTTGGGATATCAGTGGTTAACGAGAAAGTCAAGTCTGTAGATCAAAAACTTCACGTTTCAGATAAAACAATGGCTGCAATCTTCGCAGCTGAGAGGAAACTCAATGATACAGGTTCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAAGTCGCAAAAGCAGGGCAGGCAGCAGCCAAAACCATGCCAAAAGAAGAGAAAGCTCCCTAA

Protein sequence

MQSQTRTVQVKHVSDLATEREIHDEQGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAAKTMPKEEKAP

Homology

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BLAST of Lsi10G002120 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.7e-38
Identity = 100/253 (39.53%), Postives = 150/253 (59.29%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIH------------DEQGESKTAFVTFRDPKALEIALLL 60
           M SQ R+V+V ++S  ATE +I             D Q    +A+VTF++ +  E A+LL
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHSAYVTFKETQGAETAVLL 60

Query: 61  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 120
           SGA+I DQ V I  A N+ P                       P+   + +Q S  +  V
Sbjct: 61  SGASIADQSVIIELAPNYSP-----------------------PAAPHAETQSSGAESVV 120

Query: 121 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 180
            +A++VV+++LAKG  +G+DA+ KAKAFDEKH  T++A+A V S D+++GL++KLT G S
Sbjct: 121 QKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTS 180

Query: 181 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAK- 240
           +VNEK+K+VDQ   V+++T +   AAE+ ++  GSAV  ++YV  G +W  GAF +VA+ 
Sbjct: 181 LVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQA 230

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BLAST of Lsi10G002120 vs. TrEMBL
Match: A0A0A0LNE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.1e-110
Identity = 227/254 (89.37%), Postives = 231/254 (90.94%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSDLATEREIH+               EQGESKTAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVD+IVSI+PAENHVPRREMQEVRV DNAACLTPTENN PSIEDSASQPSSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

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BLAST of Lsi10G002120 vs. TrEMBL
Match: A0A0A0KYL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 2.2e-90
Identity = 198/254 (77.95%), Postives = 206/254 (81.10%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI++               EQG+S+TAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVDQIVSISP ENHVPRREMQ                      DS SQ SSGK
Sbjct: 61  LLLSGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGSAIGQDAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGK+
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKI 232

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BLAST of Lsi10G002120 vs. TrEMBL
Match: M5VRI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 9.2e-89
Identity = 185/253 (73.12%), Postives = 211/253 (83.40%), Query Frame = 1


Query: 2   QSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIAL 61
           Q QTRTVQVK +SDLA++REIH+               E G+SKTAFVTF+DPKALEIAL
Sbjct: 3   QLQTRTVQVKQLSDLASDREIHEFFSFSGEIERIQIQREPGQSKTAFVTFKDPKALEIAL 62

Query: 62  LLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKM 121
           LLSGATIVDQIV ISP EN+VP+ ++ EVR+V++A C  P     P+ ED  S P++G++
Sbjct: 63  LLSGATIVDQIVIISPVENYVPKTDVLEVRMVESAVCAAPDGILSPNAEDRNSPPTNGRV 122

Query: 122 YVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVG 181
           YVNRAQ+VV  ++AKGSAIGQDA+NKAKAFDEKHRLTASAS KV+SFD+RVGLTEKLTVG
Sbjct: 123 YVNRAQDVVTCIVAKGSAIGQDAVNKAKAFDEKHRLTASASEKVISFDKRVGLTEKLTVG 182

Query: 182 ISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVA 239
            SVVNEKVKSVDQ+LHVSDKTMAAIFAAERKLNDTGSAVKTS+YVTAGAAWLNGAFGKVA
Sbjct: 183 FSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGAAWLNGAFGKVA 242

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BLAST of Lsi10G002120 vs. TrEMBL
Match: W9QLV2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014722 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.9e-87
Identity = 186/251 (74.10%), Postives = 208/251 (82.87%), Query Frame = 1


Query: 4   QTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIALLL 63
           QTRTVQVK VS+LATEREIH+               E G+SKTAFVTF+DPKALEIALLL
Sbjct: 177 QTRTVQVKQVSNLATEREIHEFFSFSGEIQHIEIRSEPGQSKTAFVTFKDPKALEIALLL 236

Query: 64  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 123
           SGATIVDQIVSISP EN+V + EMQEVRVVDNA C+ P EN   ++ED  +   +G++YV
Sbjct: 237 SGATIVDQIVSISPVENYVSKCEMQEVRVVDNAVCVAP-ENVSQNVEDKTNPTGNGRVYV 296

Query: 124 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 183
            RAQ+VVA VLAKGSAI QDA+N+AKAFDEKH+L A ASAKVLSFD+RVGLTEK TVGIS
Sbjct: 297 GRAQDVVANVLAKGSAIRQDAINRAKAFDEKHQLRAGASAKVLSFDKRVGLTEKFTVGIS 356

Query: 184 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKA 239
           VVNEKVKSVDQ+LHVSDKTMAAIFAAERKLN+TGSAVKTS+YVTAGAAWLNGAF KVA+A
Sbjct: 357 VVNEKVKSVDQRLHVSDKTMAAIFAAERKLNNTGSAVKTSRYVTAGAAWLNGAFSKVARA 416

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BLAST of Lsi10G002120 vs. TrEMBL
Match: A0A067L6H7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02699 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 186/253 (73.52%), Postives = 213/253 (84.19%), Query Frame = 1


Query: 4   QTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIALLL 63
           Q RTVQVK++SDLA+EREIH+               E G+SKTAFVTF++ KALEIALLL
Sbjct: 2   QARTVQVKNLSDLASEREIHEFFSFSGEIEHIEIQRENGQSKTAFVTFKEAKALEIALLL 61

Query: 64  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPS-IEDSASQPS-SGKM 123
           SGATIVDQIVSI+PAEN+VP RE+QEVR VDNA    P E  FPS +E+S + P+ +G++
Sbjct: 62  SGATIVDQIVSITPAENYVPNRELQEVRRVDNAVSAIPAEG-FPSDVEESKTSPTGNGRV 121

Query: 124 YVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVG 183
           YV++AQEVV+ +LAKGSA GQDAMNKAKAFDEKHRLTASASAKV+SFDRRVGLTEKLTVG
Sbjct: 122 YVSKAQEVVSNMLAKGSAFGQDAMNKAKAFDEKHRLTASASAKVISFDRRVGLTEKLTVG 181

Query: 184 ISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVA 239
           IS VNEKVKSVDQ+LHVSDKTMAAIFAAERK+NDTGSAVK+S+YVTAG AWLNGAF KVA
Sbjct: 182 ISAVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKSSRYVTAGTAWLNGAFSKVA 241

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BLAST of Lsi10G002120 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 294.3 bits (752), Expect = 7.0e-80
Identity = 170/250 (68.00%), Postives = 200/250 (80.00%), Query Frame = 1


Query: 5   TRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIALLLS 64
           TR+VQV +VSDLATEREIH+               E G+S+ AFVTF DPKALEIALLLS
Sbjct: 4   TRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLS 63

Query: 65  GATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVN 124
           GATIVDQIV+I+ AEN+V RRE QEVR++DNA  L   E+   + +   +   + + YV+
Sbjct: 64  GATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQES---TTQTKTNMDGNSRAYVS 123

Query: 125 RAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISV 184
           +AQ+VVATVLAKGSA+GQDA+NKAKAFDEKH+L A+ASAKV SFD+RVGLTEKL+VGIS 
Sbjct: 124 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISA 183

Query: 185 VNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAG 239
           VNEKVKSVDQKL VSDKTMAAIFAAERKLNDTGSAVK+S+YVTAGAAW +GAF KVA+ G
Sbjct: 184 VNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVG 243

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BLAST of Lsi10G002120 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-41
Identity = 102/239 (42.68%), Postives = 149/239 (62.34%), Query Frame = 1


Query: 7   TVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIALLLSGA 66
           TV+V +VS  AT+R++ +               E   +K A+VTF+D +  E A+LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNRA 126
           TIVD  V +S A ++    E          A L P        +DS   P +G   + +A
Sbjct: 65  TIVDSSVIVSMAPDYQLSPEA--------LASLEP--------KDSNKSPKAGDSVLRKA 124

Query: 127 QEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVN 186
           ++VV+++LAKG  +G+DA+ KAK+ DEKH+LT++ASAKV SFD+++G T+K+  G  VV 
Sbjct: 125 EDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVG 184

Query: 187 EKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQ 231
           EKV+ VDQK  VS+KT +AI AAE+ +++ GSA+  ++YV  GA W+ GAF KVAKA +
Sbjct: 185 EKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAE 227

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BLAST of Lsi10G002120 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-39
Identity = 98/254 (38.58%), Postives = 150/254 (59.06%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD-------------EQGESKTAFVTFRDPKALEIALL 60
           M SQ R+V+V ++S  ATE +I +             +     +A+VTF++ +  E A+L
Sbjct: 1   MASQVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHSAYVTFKETQGAETAVL 60

Query: 61  LSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMY 120
           LSGA+I DQ V I  A N+ P                       P+   + +Q S  +  
Sbjct: 61  LSGASIADQSVIIELAPNYSP-----------------------PAAPHAETQSSGAESV 120

Query: 121 VNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGI 180
           V +A++VV+++LAKG  +G+DA+ KAKAFDEKH  T++A+A V S D+++GL++KLT G 
Sbjct: 121 VQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGT 180

Query: 181 SVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAK 240
           S+VNEK+K+VDQ   V+++T +   AAE+ ++  GSAV  ++YV  G +W  GAF +VA+
Sbjct: 181 SLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQ 231

[Close]

BLAST of Lsi10G002120 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 93/240 (38.75%), Postives = 154/240 (64.17%), Query Frame = 1


Query: 7   TVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIALLLSGA 66
           TV+V +VS  ATER++ +               E   SK A+VTF+D +  E A+LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDQIVSISPAENH-VPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNR 126
           TIVD  V+++ + ++ +P   +  +  +  +      +++ P+ ED +           +
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKES-----NKSSSPTREDVS--------VFRK 124

Query: 127 AQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVV 186
           A++VV+ +++KG  +G+DA+ KAK+ DEKH+LT++ASA+V SFD+R+G TEK+  G +VV
Sbjct: 125 AEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVV 184

Query: 187 NEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQ 231
           +EKVK VDQK  V++KT +AI AAE+ +++ GSA+  ++YV  GA W+ GAF +V+KA +
Sbjct: 185 SEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAE 231

[Close]

BLAST of Lsi10G002120 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 137.9 bits (346), Expect = 8.4e-33
Identity = 84/241 (34.85%), Postives = 141/241 (58.51%), Query Frame = 1


Query: 3   SQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIALL 62
           S  +TV++ +VS + +++++ +               E  ES+ A+VTF+D +  E A+L
Sbjct: 26  SGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAML 85

Query: 63  LSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMY 122
           L+GA I D  VSI+PA N+         ++   A  L   E++F                
Sbjct: 86  LTGAVIADLRVSITPAVNY---------QLPPEALALDSQEHSFNGFS------------ 145

Query: 123 VNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGI 182
           V +A++VV  ++ +G A+G+DAM KAKAFD++H L ++ASA + S D ++GL+EKL++G 
Sbjct: 146 VKKAEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGT 205

Query: 183 SVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKVAK 229
           +VVNEK++ +D++  V + T +A+ AAE       +A+  + YV++GA+W + AFG V K
Sbjct: 206 TVVNEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTK 245

[Close]

BLAST of Lsi10G002120 vs. NCBI nr
Match: gi|449468279|ref|XP_004151849.1| (PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus])

HSP 1 Score: 407.5 bits (1046), Expect = 1.6e-110
Identity = 227/254 (89.37%), Postives = 231/254 (90.94%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSDLATEREIH+               EQGESKTAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVD+IVSI+PAENHVPRREMQEVRV DNAACLTPTENN PSIEDSASQPSSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

[Close]

BLAST of Lsi10G002120 vs. NCBI nr
Match: gi|659125669|ref|XP_008462804.1| (PREDICTED: uncharacterized protein LOC103501087 [Cucumis melo])

HSP 1 Score: 403.3 bits (1035), Expect = 3.0e-109
Identity = 225/254 (88.58%), Postives = 230/254 (90.55%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVSDLATEREIH+               EQGESKTAFVTF DPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVD+IVSI+PAENHVPRRE+QEVRV DNAACLTPTENN PS EDSASQPSSGK
Sbjct: 61  LLLSGATIVDKIVSITPAENHVPRREIQEVRVADNAACLTPTENNSPSREDSASQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTA AAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKV 240

[Close]

BLAST of Lsi10G002120 vs. NCBI nr
Match: gi|659082717|ref|XP_008441995.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 1.1e-103
Identity = 217/254 (85.43%), Postives = 223/254 (87.80%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI++               EQGES+TAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVDQ VSISP ENHVPRREMQ   VVDNAACLTPTENNFP+ EDS SQPSSGK
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQ---VVDNAACLTPTENNFPNTEDSGSQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGS IGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKL+DTGSAVKTSKYVTA AAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKV 240

[Close]

BLAST of Lsi10G002120 vs. NCBI nr
Match: gi|1000952708|ref|XP_002525721.2| (PREDICTED: binding partner of ACD11 1 isoform X2 [Ricinus communis])

HSP 1 Score: 344.0 bits (881), Expect = 2.2e-91
Identity = 190/254 (74.80%), Postives = 219/254 (86.22%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQ QTRTVQVKH+SDLA+EREIH+               E GES+TAFVTF+DPKALEIA
Sbjct: 1   MQQQTRTVQVKHLSDLASEREIHEFFSFSGEIEHIDIVRENGESRTAFVTFKDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVD+IVSI+P EN+VP+RE+QEVR V++A  +  TE+ FPS++   S P++G+
Sbjct: 61  LLLSGATIVDKIVSITPVENYVPKRELQEVRNVNDAVSVVITES-FPSMDAKTSPPNNGR 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVV+T+LAKGSA+GQDAMNKAKAFDEKH+LTASASAKV S DR+VGLTEKLTV
Sbjct: 121 MYVNRAQEVVSTMLAKGSALGQDAMNKAKAFDEKHQLTASASAKVFSLDRKVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQ+LHVSDKTMAAIFAAERK+NDTGSAVK+S+YVTAGAAWLNGAF KV
Sbjct: 181 GISVVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKSSRYVTAGAAWLNGAFDKV 240

[Close]

BLAST of Lsi10G002120 vs. NCBI nr
Match: gi|659082719|ref|XP_008441996.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 8.3e-91
Identity = 200/254 (78.74%), Postives = 205/254 (80.71%), Query Frame = 1


Query: 1   MQSQTRTVQVKHVSDLATEREIHD---------------EQGESKTAFVTFRDPKALEIA 60
           MQSQTRTVQVKHVS+LATEREI++               EQGES+TAFVTFRDPKALEIA
Sbjct: 1   MQSQTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIA 60

Query: 61  LLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGK 120
           LLLSGATIVDQ VSISP ENHVPRREMQ                      DS SQPSSGK
Sbjct: 61  LLLSGATIVDQTVSISPVENHVPRREMQ----------------------DSGSQPSSGK 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           MYVNRAQEVVA VLAKGS IGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV
Sbjct: 121 MYVNRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTAGAAWLNGAFGKV 239
           GISVVNEKVKSVDQ LHVSDKT AAIFAAERKL+DTGSAVKTSKYVTA AAWLNGAFGKV
Sbjct: 181 GISVVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKV 232

The following BLAST results are available for this feature:

BLAST of Lsi10G002120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	3.7e-38	39.53	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]

BLAST of Lsi10G002120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNE8_CUCSA	1.1e-110	89.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1	[more]
A0A0A0KYL6_CUCSA	2.2e-90	77.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1	[more]
M5VRI4_PRUPE	9.2e-89	73.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1	[more]
W9QLV2_9ROSA	3.9e-87	74.10	Uncharacterized protein OS=Morus notabilis GN=L484_014722 PE=4 SV=1	[more]
A0A067L6H7_JATCU	1.1e-86	73.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02699 PE=4 SV=1	[more]

BLAST of Lsi10G002120 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G32450.1	7.0e-80	68.00	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	2.9e-41	42.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	7.8e-39	38.58	binding partner of acd11 1	[more]
AT5G46870.1	2.3e-38	38.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G67950.3	8.4e-33	34.85	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Lsi10G002120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468279\|ref\|XP_004151849.1\|	1.6e-110	89.37	PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus]	[more]
gi\|659125669\|ref\|XP_008462804.1\|	3.0e-109	88.58	PREDICTED: uncharacterized protein LOC103501087 [Cucumis melo]	[more]
gi\|659082717\|ref\|XP_008441995.1\|	1.1e-103	85.43	PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo]	[more]
gi\|1000952708\|ref\|XP_002525721.2\|	2.2e-91	74.80	PREDICTED: binding partner of ACD11 1 isoform X2 [Ricinus communis]	[more]
gi\|659082719\|ref\|XP_008441996.1\|	8.3e-91	78.74	PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G002120.1	Lsi10G002120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..70 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G002120	Csa2G431170	Cucumber (Chinese Long) v2	culsiB094
Lsi10G002120	CSPI02G27320	Wild cucumber (PI 183967)	cpilsiB092
Lsi10G002120	Cucsa.017340	Cucumber (Gy14) v1	cgylsiB424
Lsi10G002120	Cla006792	Watermelon (97103) v1	lsiwmB068
Lsi10G002120	MELO3C024750	Melon (DHL92) v3.5.1	lsimeB053
Lsi10G002120	ClCG02G007840	Watermelon (Charleston Gray)	lsiwcgB055
Lsi10G002120	MELO3C024750.2	Melon (DHL92) v3.6.1	lsimedB054
Lsi10G002120	Cla97C02G034490	Watermelon (97103) v2	lsiwmbB054
Lsi10G002120	Bhi10G001226	Wax gourd	lsiwgoB069
Lsi10G002120	CsGy2G026770	Cucumber (Gy14) v2	cgyblsiB087
Lsi10G002120	CsaV3_2G035910	Cucumber (Chinese Long) v3	cuclsiB105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G002120	Silver-seed gourd	carlsiB870
Lsi10G002120	Silver-seed gourd	carlsiB961
Lsi10G002120	Cucurbita maxima (Rimu)	cmalsiB507
Lsi10G002120	Cucurbita maxima (Rimu)	cmalsiB548
Lsi10G002120	Cucurbita moschata (Rifu)	cmolsiB491
Lsi10G002120	Cucurbita moschata (Rifu)	cmolsiB533
Lsi10G002120	Cucurbita pepo (Zucchini)	cpelsiB220
Lsi10G002120	Cucurbita pepo (Zucchini)	cpelsiB589