ClCG02G007840 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G007840
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA binding (RRM/RBD/RNP motifs) family protein LENGTH=267
Location	CG_Chr02 : 9556002 .. 9559633 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCAAATTGCCTCTAACCTCCAACCTGTACAACTTCCTCTCTCTCTCTCTCTCTTTCTGCAAGAAATTCCTCGAGTTCTTCGATCATTAGCTATGCAGGTAACAAATCCCTCAATTTCCACTTCTTTCTTTCAACTTTTGCTCTCTCTAATTTCCGTAATCAACTTCATCTTCATTTCTTCTTCTCACTCTCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGGTAGGTCATTAACTCTCTCTTACTGTAAACAGAACTGCAAAAAGTGGTAAAAGACAAGATGTGTATGATTGATTCATTAATTTATTATGATTCCCTTTTCTATGCGCCTGATTTTGTTTTAGTTTTCCTACTGTTTGCCTTCCGAGAAAAAGTAATTAGCAATTAAGCATGTGAGTTTTGTTGATTTTCCTTGATTTTTCTCAATATTAAGTGTGAGGGTTGTAATTGTTATAGCTTAACAAGTAATTGAGGAAACCGCTCCTGAGATTGTTATTCTAATTTTCTCTTCCTGGTGCAGTGAACGAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGTATTTCATTATCTCGATTCTCTTTCATATCCACGGAGTCAGTTATTGTGATGTGTTTGTTGAACTTTTGGTTTTACAATGAATGTTAAAGAGCGTCATGATGAAGTTTGGTCATGTGGGTCTACATTTGGCTGTTTTTACCCTCTTATTTAAGCCATGTTGGTTTGTTAGTGTCTAGTTAGTTCTATAGCCTCTTTACTTTTATTTCCTTCATTTTCTTGCCATTAGTTTTGATTGAATTGAAAAGTGATGGATGAGTAGAATCTCAGTTATTTTATTTTATTAATGGAAGTACTTTTTCTTCAGAAGAAGAATTTTCTACACGTAACCTCAAACATGACAGGAGAAATTTCTTTAGAGCTGTAATATACGATCTTTTAGTTGAAGCTACCCTGTTTTTGCATCTTGTCTTTCTGATCACCACCCTACTCTTTCTAATAAAATAATACTAATAATAAACCGTAGATGAGTTATCAAACTGGCTTTTACTTTTTGTTTCGAATAAAAGCATTAGTGAGAAGTAGTACTAAATGGACATGTTTCTAGAAAGAGAAGGAAGCTAATACCTTTTCTTTGCATGATCATCTCTTTACGCAATAGTGGAATTATTTGATATTTTCATCACGTAATGCTGGAAATATACCTTTTCTTCTCCATATCTGGCTGATGCCATAAGCTACTATAAACAATTTCTATCATTTATTGGTTTGTTGTTTAGGGAGCAACAATTGTAGATCAGATTGTAAGCATATCTCCTGCTGAAAATCATGTTCCAAGAAGAGAAATGCAGGTATTATTCTTGTGTCTGAATATATTTCCAGGGCCGTCTTGCTGTTTATTATATATTCAATATTTTAAATTTCCTATGTTTGCAGGAAGTTCGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGTAATTGTGTTGGCCCCACTCTATGAATATCAAGTATTTGTGTAGCATGTTCTTTCACGTTGATCTACTATTTAAAGAAAAACCAAGGCTGGGGAGTTTCATCAAATGGAAAAATTTAGGACATGTTTCATGTTTTCTGTATTTAGATTTTCTTAAATTGATGTAGATGGATGAAAAGTAAAACCTCCATTTAATCCATGTCGTGGTGAACCTCACTCCACTTGCTTAAACTATGGTGAAGAACTGGTGAAACAGTTTCACACTTTTAGTTTTCATGTGGATCTTCATTTCCGTGGTTTATTTAATTATACAAGTGGATAGTGAGGCACCTTTTTTTTTTTCTCACCTTAAATCTTTTTGTGTTTATAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGATGAAAAACATCGCTTAACGGCTAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTCACCGAGAAATTGACAGTTGGGATATCAGTGGTTAATGAGAAAGTCAAGTCTGTAGATCAAAAGCTTCACGTTTCAGATAAAACAATGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAACAATACGGGATCTGCTGTCAAAACAAGCAAGTAAGAATCATCATTTGCACTGCTCTATTCTGTTAGCTTATCCCCTAAGAAATTTTTACTTCCCTTCCTCCAGCTATCTTCAAATTTGAGAACTTGAATTCCGCTCCCAGCAAGAAAGCAGAAAATTAGTTTTCTAGAACAGCTCCCAAAACAACTCCCTACTGTTTCAACTTCTTGAGAACTTTAGATCGATATAGTTGTATATACGGAAGTGAATTAATTGTTTCACTCCATCTTGGCGTTGAACAGGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAGGTCGCAAAAGCAGGGCAGGCAGCAGGTACAAAAACCAGAGAGAAGTTCCATTCGGCTATGTCAAACTTAATTTCAAAGGTGCGTTTATGTAACCCTTTTATTTAAGCCGACATTCTCCGAAAGTTGCTTTGCTGTGGGTAACTAAGAACAAGCTTAGGAACAAGCTTAGTTACTCAAATATATTTTTCTAGCGTTTTGTTTTATGGATGAGCCAAAACCATGCCTAGAAAAGGAATTTGGCCAAAATAAGAGAAAGCTCTCTAAAACCTCATTTTGTTCATGTCTCCTTCAAAGAACCTAGGCTGTTTGGAGTCTTAAAGAAACACACATGTAATTAATAACAAGAACTATTAATTAAAATATACATTTTGACTATAGAGTAAGCCAAATCCATGGCCGAAAACGAATGATTCCCATACGAGAGAAATTTCTTTAAAACCTTGTTTGATTCCAAACAACCAAAGTTTGGATTGATTTTTTAAGTGAAAAATAATTGTATTTTAAAGCATTGTGAGAATCAATTCAAACAGATCTTTCGAAGACTTGCAAGATTAAAAAAAAATAGTCGATAAGGAAAAAGTAACTAAGATTCTGTTTGGTAATGATTTTGTTTTAACAAAATTAATCTATTTAATCATTTTTGTAGCTGAATCTGTTGTAATGTAACTGACCTTGAGCTTTGAAACATGCAGGAACCCCCAGTTGTTGCCTAAGCTTAAAACTTACCTCACTTGGCTTGGCTGCTTCTATTTTCAGTGGGGTATTCAAATGAGTTTCTTTAATTCTATTTCTTCAGCTTATTTTTTCTTGAGGACTGTACTCTATTGTTTTTTTTTTTTTTTTTCAAGTATTATATATATTTTTTATATTGTTCATATTCTTTAATTACAAGGGTGTTTGGCTGATGACAATTTTGCATTTGTAAGATTGGTTATGGAAGTGTAAAGAAAATCCAATTATGGTTTGTCTTATACTCTTAATTATTTGTTTAGGTTAGGAGTATAAGTGTGTG

mRNA sequence

CTTTCAAATTGCCTCTAACCTCCAACCTGTACAACTTCCTCTCTCTCTCTCTCTCTTTCTGCAAGAAATTCCTCGAGTTCTTCGATCATTAGCTATGCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGTGAACGAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACAATTGTAGATCAGATTGTAAGCATATCTCCTGCTGAAAATCATGTTCCAAGAAGAGAAATGCAGGAAGTTCGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGATGAAAAACATCGCTTAACGGCTAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTCACCGAGAAATTGACAGTTGGGATATCAGTGGTTAATGAGAAAGTCAAGTCTGTAGATCAAAAGCTTCACGTTTCAGATAAAACAATGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAACAATACGGGATCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAGGTCGCAAAAGCAGGGCAGGCAGCAGGTACAAAAACCAGAGAGAAGTTCCATTCGGCTATGTCAAACTTAATTTCAAAGGTGCGAACCCCCAGTTGTTGCCTAAGCTTAAAACTTACCTCACTTGGCTTGGCTGCTTCTATTTTCAGTGGGGTATTCAAATGAGTTTCTTTAATTCTATTTCTTCAGCTTATTTTTTCTTGAGGACTGTACTCTATTGTTTTTTTTTTTTTTTTTCAAGTATTATATATATTTTTTATATTGTTCATATTCTTTAATTACAAGGGTGTTTGGCTGATGACAATTTTGCATTTGTAAGATTGGTTATGGAAGTGTAAAGAAAATCCAATTATGGTTTGTCTTATACTCTTAATTATTTGTTTAGGTTAGGAGTATAAGTGTGTG

Coding sequence (CDS)

ATGCAGACTCGGACGGTTCAAGTCAAGCACGTTTCGGATCTAGCTACTGAGAGGGAGATTCACGAGTTCTTCTCCTTCTCTGGAGAAATTGAGCACATAGAGATTCAATGTGAACGAGGGGAATCCAAGACTGCGTTCGTGACATTTAGAGATCCCAAAGCTCTTGAAATTGCCTTGTTGTTATCGGGAGCAACAATTGTAGATCAGATTGTAAGCATATCTCCTGCTGAAAATCATGTTCCAAGAAGAGAAATGCAGGAAGTTCGGGTTGTGGACAATGCTGCATGTCTCACGCCTACAGAAAATAATTTTCCTAGCATTGAGGATTCTGCGAGCCAGCCTAGCAGTGGAAAAATGTATGTTAATAGAGCACAAGAAGTAGTTGCAACTGTGCTTGCTAAAGGTTCAGCAATTGGACAAGATGCCATGAACAAGGCAAAAGCATTTGATGAAAAACATCGCTTAACGGCTAGTGCATCTGCAAAAGTATTATCCTTTGACAGAAGGGTTGGGCTCACCGAGAAATTGACAGTTGGGATATCAGTGGTTAATGAGAAAGTCAAGTCTGTAGATCAAAAGCTTCACGTTTCAGATAAAACAATGGCTGCAATCTTTGCAGCTGAGAGGAAACTCAACAATACGGGATCTGCTGTCAAAACAAGCAAGTATGTGACAGCAGGAGCTGCTTGGCTAAATGGTGCTTTTGGCAAGGTCGCAAAAGCAGGGCAGGCAGCAGGTACAAAAACCAGAGAGAAGTTCCATTCGGCTATGTCAAACTTAATTTCAAAGGTGCGAACCCCCAGTTGTTGCCTAAGCTTAAAACTTACCTCACTTGGCTTGGCTGCTTCTATTTTCAGTGGGGTATTCAAATGA

Protein sequence

MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAAGTKTREKFHSAMSNLISKVRTPSCCLSLKLTSLGLAASIFSGVFK

Homology

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BLAST of ClCG02G007840 vs. Swiss-Prot
Match: BPA1_ARATH (Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.5e-50
Identity = 108/251 (43.03%), Postives = 160/251 (63.75%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           Q R+V+V ++S  ATE +I EFFSFSGE+E I+IQ       +A+VTF++ +  E A+LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQ---SNEHSAYVTFKETQGAETAVLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGA+I DQ V I  A N+ P                       P+   + +Q S  +  V
Sbjct: 64  SGASIADQSVIIELAPNYSP-----------------------PAAPHAETQSSGAESVV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
            +A++VV+++LAKG  +G+DA+ KAKAFDEKH  T++A+A V S D+++GL++KLT G S
Sbjct: 124 QKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           +VNEK+K+VDQ   V+++T +   AAE+ +++ GSAV  ++YV  G +W  GAF +VA+A
Sbjct: 184 LVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQA 228

Query: 242 GQAAGTKTREK 253
               G KT+EK
Sbjct: 244 AGEVGQKTKEK 228

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BLAST of ClCG02G007840 vs. Swiss-Prot
Match: VIPI_SCHPO (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 56/256 (21.88%), Postives = 104/256 (40.62%), Query Frame = 1


Query: 6   VQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSGAT 65
           V V ++S   TE++I +FFSF G++ +I  + + GE++TA + F  P A + ALLL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTE-KSGETQTAKIQFERPSATKTALLLQDAL 64

Query: 66  IVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNRAQ 125
           +    + I+                 ++    + T+      + +A Q    +       
Sbjct: 65  LGQNKIQITS----------------EDGGAASTTDQGGAGGDQAARQEDKPR------S 124

Query: 126 EVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVVNE 185
            +++ +L++G  +    + K+   D+ + +++             G+ E    G+  VNE
Sbjct: 125 AIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFK----------GILESALSGVRSVNE 184

Query: 186 KVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKAGQAA 245
           +    ++   V +K     FA   KLN T S V T  +     A           AG +A
Sbjct: 185 RYHVTEKANEVDNK-----FAISDKLNRTSSLVSTYFHKALETA-----------AGTSA 211

Query: 246 GTKTREKFHSAMSNLI 262
           G K +  +    + L+
Sbjct: 245 GQKVQNAYEDGKNQLL 211

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BLAST of ClCG02G007840 vs. TrEMBL
Match: A0A0A0LNE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 6.6e-134
Identity = 252/262 (96.18%), Postives = 257/262 (98.09%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLL
Sbjct: 4   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVD+IVSI+PAENHVPRREMQEVRV DNAACLTPTENN PSIEDSASQPSSGKMYV
Sbjct: 64  SGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQKLHVSDKTMAAIFAAERKLN+TGSAVKTSKYVTA AAWLNGAFGKVAKA
Sbjct: 184 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISK 264
           GQAAGTKTREKFH AMSNLISK
Sbjct: 244 GQAAGTKTREKFHLAMSNLISK 265

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BLAST of ClCG02G007840 vs. TrEMBL
Match: A0A0A0KYL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 1.6e-111
Identity = 220/262 (83.97%), Postives = 230/262 (87.79%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCE+G+S+TAFVTFRDPKALEIALLL
Sbjct: 4   QTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVDQIVSISP ENHVPRREMQ                      DS SQ SSGKMYV
Sbjct: 64  SGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVA VLAKGSAIGQDAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQ LHVSDKT AAIFAAERKLN+TGSAVKTSKYVTA AAWLNGAFGK+AKA
Sbjct: 184 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISK 264
           GQAAGTKTREKFH AMSNL SK
Sbjct: 244 GQAAGTKTREKFHLAMSNLTSK 243

[Close]

BLAST of ClCG02G007840 vs. TrEMBL
Match: W9QLV2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014722 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 6.6e-110
Identity = 211/264 (79.92%), Postives = 237/264 (89.77%), Query Frame = 1


Query: 1   MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALL 60
           MQTRTVQVK VS+LATEREIHEFFSFSGEI+HIEI+ E G+SKTAFVTF+DPKALEIALL
Sbjct: 176 MQTRTVQVKQVSNLATEREIHEFFSFSGEIQHIEIRSEPGQSKTAFVTFKDPKALEIALL 235

Query: 61  LSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMY 120
           LSGATIVDQIVSISP EN+V + EMQEVRVVDNA C+ P EN   ++ED  +   +G++Y
Sbjct: 236 LSGATIVDQIVSISPVENYVSKCEMQEVRVVDNAVCVAP-ENVSQNVEDKTNPTGNGRVY 295

Query: 121 VNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGI 180
           V RAQ+VVA VLAKGSAI QDA+N+AKAFDEKH+L A ASAKVLSFD+RVGLTEK TVGI
Sbjct: 296 VGRAQDVVANVLAKGSAIRQDAINRAKAFDEKHQLRAGASAKVLSFDKRVGLTEKFTVGI 355

Query: 181 SVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAK 240
           SVVNEKVKSVDQ+LHVSDKTMAAIFAAERKLNNTGSAVKTS+YVTAGAAWLNGAF KVA+
Sbjct: 356 SVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNNTGSAVKTSRYVTAGAAWLNGAFSKVAR 415

Query: 241 AGQAAGTKTREKFHSAMSNLISKV 265
           AGQ AGTKTREKF+ A+SNL +K+
Sbjct: 416 AGQVAGTKTREKFNLAVSNLTAKL 438

[Close]

BLAST of ClCG02G007840 vs. TrEMBL
Match: M5VRI4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 6.6e-110
Identity = 207/263 (78.71%), Postives = 237/263 (90.11%), Query Frame = 1


Query: 1   MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALL 60
           +QTRTVQVK +SDLA++REIHEFFSFSGEIE I+IQ E G+SKTAFVTF+DPKALEIALL
Sbjct: 4   LQTRTVQVKQLSDLASDREIHEFFSFSGEIERIQIQREPGQSKTAFVTFKDPKALEIALL 63

Query: 61  LSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMY 120
           LSGATIVDQIV ISP EN+VP+ ++ EVR+V++A C  P     P+ ED  S P++G++Y
Sbjct: 64  LSGATIVDQIVIISPVENYVPKTDVLEVRMVESAVCAAPDGILSPNAEDRNSPPTNGRVY 123

Query: 121 VNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGI 180
           VNRAQ+VV  ++AKGSAIGQDA+NKAKAFDEKHRLTASAS KV+SFD+RVGLTEKLTVG 
Sbjct: 124 VNRAQDVVTCIVAKGSAIGQDAVNKAKAFDEKHRLTASASEKVISFDKRVGLTEKLTVGF 183

Query: 181 SVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAK 240
           SVVNEKVKSVDQ+LHVSDKTMAAIFAAERKLN+TGSAVKTS+YVTAGAAWLNGAFGKVAK
Sbjct: 184 SVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGAAWLNGAFGKVAK 243

Query: 241 AGQAAGTKTREKFHSAMSNLISK 264
           AGQAAGTKTREKFH A+SNL +K
Sbjct: 244 AGQAAGTKTREKFHMAVSNLTAK 266

[Close]

BLAST of ClCG02G007840 vs. TrEMBL
Match: A0A067L6H7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02699 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 3.3e-109
Identity = 212/265 (80.00%), Postives = 241/265 (90.94%), Query Frame = 1


Query: 1   MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALL 60
           MQ RTVQVK++SDLA+EREIHEFFSFSGEIEHIEIQ E G+SKTAFVTF++ KALEIALL
Sbjct: 1   MQARTVQVKNLSDLASEREIHEFFSFSGEIEHIEIQRENGQSKTAFVTFKEAKALEIALL 60

Query: 61  LSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPS-IEDSASQPS-SGK 120
           LSGATIVDQIVSI+PAEN+VP RE+QEVR VDNA    P E  FPS +E+S + P+ +G+
Sbjct: 61  LSGATIVDQIVSITPAENYVPNRELQEVRRVDNAVSAIPAEG-FPSDVEESKTSPTGNGR 120

Query: 121 MYVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTV 180
           +YV++AQEVV+ +LAKGSA GQDAMNKAKAFDEKHRLTASASAKV+SFDRRVGLTEKLTV
Sbjct: 121 VYVSKAQEVVSNMLAKGSAFGQDAMNKAKAFDEKHRLTASASAKVISFDRRVGLTEKLTV 180

Query: 181 GISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKV 240
           GIS VNEKVKSVDQ+LHVSDKTMAAIFAAERK+N+TGSAVK+S+YVTAG AWLNGAF KV
Sbjct: 181 GISAVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKSSRYVTAGTAWLNGAFSKV 240

Query: 241 AKAGQAAGTKTREKFHSAMSNLISK 264
           A+AGQAAGTKTREKF+ A+SNL SK
Sbjct: 241 ARAGQAAGTKTREKFNLAVSNLTSK 264

[Close]

BLAST of ClCG02G007840 vs. TAIR10
Match: AT5G32450.1 (AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 361.7 bits (927), Expect = 4.3e-100
Identity = 191/261 (73.18%), Postives = 224/261 (85.82%), Query Frame = 1


Query: 3   TRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLS 62
           TR+VQV +VSDLATEREIHEFFSFSG+IEHIEIQ E G+S+ AFVTF DPKALEIALLLS
Sbjct: 4   TRSVQVNNVSDLATEREIHEFFSFSGDIEHIEIQKEFGQSRIAFVTFTDPKALEIALLLS 63

Query: 63  GATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVN 122
           GATIVDQIV+I+ AEN+V RRE QEVR++DNA  L   E+   + +   +   + + YV+
Sbjct: 64  GATIVDQIVTITRAENYVQRRETQEVRMLDNAMPLGLQES---TTQTKTNMDGNSRAYVS 123

Query: 123 RAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISV 182
           +AQ+VVATVLAKGSA+GQDA+NKAKAFDEKH+L A+ASAKV SFD+RVGLTEKL+VGIS 
Sbjct: 124 KAQDVVATVLAKGSALGQDAVNKAKAFDEKHQLRANASAKVSSFDKRVGLTEKLSVGISA 183

Query: 183 VNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKAG 242
           VNEKVKSVDQKL VSDKTMAAIFAAERKLN+TGSAVK+S+YVTAGAAW +GAF KVA+ G
Sbjct: 184 VNEKVKSVDQKLQVSDKTMAAIFAAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVG 243

Query: 243 QAAGTKTREKFHSAMSNLISK 264
           Q AG+KT+EKF+ A+SN+ SK
Sbjct: 244 QVAGSKTKEKFNLAVSNMSSK 261

[Close]

BLAST of ClCG02G007840 vs. TAIR10
Match: AT4G17720.1 (AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 214.9 bits (546), Expect = 6.4e-56
Identity = 118/252 (46.83%), Postives = 165/252 (65.48%), Query Frame = 1


Query: 1   MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALL 60
           M   TV+V +VS  AT+R++ EFFSFSG+I ++E Q E   +K A+VTF+D +  E A+L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMY 120
           LSGATIVD  V +S A ++    E          A L P        +DS   P +G   
Sbjct: 61  LSGATIVDSSVIVSMAPDYQLSPEA--------LASLEP--------KDSNKSPKAGDSV 120

Query: 121 VNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGI 180
           + +A++VV+++LAKG  +G+DA+ KAK+ DEKH+LT++ASAKV SFD+++G T+K+  G 
Sbjct: 121 LRKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGT 180

Query: 181 SVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAK 240
            VV EKV+ VDQK  VS+KT +AI AAE+ ++N GSA+  ++YV  GA W+ GAF KVAK
Sbjct: 181 VVVGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAK 236

Query: 241 AGQAAGTKTREK 253
           A +  G K +EK
Sbjct: 241 AAEEVGQKAKEK 236

[Close]

BLAST of ClCG02G007840 vs. TAIR10
Match: AT5G46870.1 (AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 206.1 bits (523), Expect = 3.0e-53
Identity = 109/253 (43.08%), Postives = 170/253 (67.19%), Query Frame = 1


Query: 1   MQTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALL 60
           M   TV+V +VS  ATER++ EFFSFSG+I ++E Q E   SK A+VTF+D +  E A+L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDQIVSISPAENH-VPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKM 120
           L+G+TIVD  V+++ + ++ +P   +  +  +  +      +++ P+ ED +        
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLPPDALASIESLKES-----NKSSSPTREDVS-------- 120

Query: 121 YVNRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVG 180
              +A++VV+ +++KG  +G+DA+ KAK+ DEKH+LT++ASA+V SFD+R+G TEK+  G
Sbjct: 121 VFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTG 180

Query: 181 ISVVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVA 240
            +VV+EKVK VDQK  V++KT +AI AAE+ ++N GSA+  ++YV  GA W+ GAF +V+
Sbjct: 181 TTVVSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVS 240

Query: 241 KAGQAAGTKTREK 253
           KA +  G K +EK
Sbjct: 241 KAAEEVGQKAKEK 240

[Close]

BLAST of ClCG02G007840 vs. TAIR10
Match: AT5G16840.2 (AT5G16840.2 binding partner of acd11 1)

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-51
Identity = 109/251 (43.43%), Postives = 160/251 (63.75%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           Q R+V+V ++S  ATE +I EFFSFSGE+E I+IQ     S  A+VTF++ +  E A+LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGA+I DQ V I  A N+ P                       P+   + +Q S  +  V
Sbjct: 64  SGASIADQSVIIELAPNYSP-----------------------PAAPHAETQSSGAESVV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
            +A++VV+++LAKG  +G+DA+ KAKAFDEKH  T++A+A V S D+++GL++KLT G S
Sbjct: 124 QKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           +VNEK+K+VDQ   V+++T +   AAE+ +++ GSAV  ++YV  G +W  GAF +VA+A
Sbjct: 184 LVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQA 229

Query: 242 GQAAGTKTREK 253
               G KT+EK
Sbjct: 244 AGEVGQKTKEK 229

[Close]

BLAST of ClCG02G007840 vs. TAIR10
Match: AT1G67950.3 (AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-44
Identity = 92/238 (38.66%), Postives = 153/238 (64.29%), Query Frame = 1


Query: 4   RTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLLSG 63
           +TV++ +VS + +++++ EFFSFSG+I+++E++ E  ES+ A+VTF+D +  E A+LL+G
Sbjct: 29  KTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQVAYVTFKDSQGAETAMLLTG 88

Query: 64  ATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYVNR 123
           A I D  VSI+PA N+         ++   A  L   E++F                V +
Sbjct: 89  AVIADLRVSITPAVNY---------QLPPEALALDSQEHSFNGFS------------VKK 148

Query: 124 AQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGISVV 183
           A++VV  ++ +G A+G+DAM KAKAFD++H L ++ASA + S D ++GL+EKL++G +VV
Sbjct: 149 AEDVVNIMVGRGYALGKDAMEKAKAFDDRHNLISNASATIASLDDKMGLSEKLSIGTTVV 208

Query: 184 NEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 242
           NEK++ +D++  V + T +A+ AAE    +  +A+  + YV++GA+W + AFG V KA
Sbjct: 209 NEKLRDIDERYQVREITKSALAAAEETAISARTALMANPYVSSGASWFSNAFGAVTKA 245

[Close]

BLAST of ClCG02G007840 vs. NCBI nr
Match: gi|449468279|ref|XP_004151849.1| (PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus])

HSP 1 Score: 485.0 bits (1247), Expect = 9.4e-134
Identity = 252/262 (96.18%), Postives = 257/262 (98.09%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLL
Sbjct: 4   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVD+IVSI+PAENHVPRREMQEVRV DNAACLTPTENN PSIEDSASQPSSGKMYV
Sbjct: 64  SGATIVDKIVSITPAENHVPRREMQEVRVADNAACLTPTENNSPSIEDSASQPSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQKLHVSDKTMAAIFAAERKLN+TGSAVKTSKYVTA AAWLNGAFGKVAKA
Sbjct: 184 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISK 264
           GQAAGTKTREKFH AMSNLISK
Sbjct: 244 GQAAGTKTREKFHLAMSNLISK 265

[Close]

BLAST of ClCG02G007840 vs. NCBI nr
Match: gi|659125669|ref|XP_008462804.1| (PREDICTED: uncharacterized protein LOC103501087 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.8e-132
Identity = 250/262 (95.42%), Postives = 256/262 (97.71%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCE+GESKTAFVTF DPKALEIALLL
Sbjct: 4   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCEQGESKTAFVTFTDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVD+IVSI+PAENHVPRRE+QEVRV DNAACLTPTENN PS EDSASQPSSGKMYV
Sbjct: 64  SGATIVDKIVSITPAENHVPRREIQEVRVADNAACLTPTENNSPSREDSASQPSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKH+LTASASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHQLTASASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQKLHVSDKTMAAIFAAERKLN+TGSAVKTSKYVTA AAWLNGAFGKVAKA
Sbjct: 184 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKVAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISK 264
           GQAAGTKTREKFH AMSNLISK
Sbjct: 244 GQAAGTKTREKFHLAMSNLISK 265

[Close]

BLAST of ClCG02G007840 vs. NCBI nr
Match: gi|659082717|ref|XP_008441995.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo])

HSP 1 Score: 459.9 bits (1182), Expect = 3.3e-126
Identity = 241/262 (91.98%), Postives = 248/262 (94.66%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVS+LATEREI+EFFSFSGEIEHIEIQCE+GES+TAFVTFRDPKALEIALLL
Sbjct: 4   QTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVDQ VSISP ENHVPRREMQ   VVDNAACLTPTENNFP+ EDS SQPSSGKMYV
Sbjct: 64  SGATIVDQTVSISPVENHVPRREMQ---VVDNAACLTPTENNFPNTEDSGSQPSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVA VLAKGS IGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQ LHVSDKT AAIFAAERKL++TGSAVKTSKYVTA AAWLNGAFGKVAKA
Sbjct: 184 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISK 264
           GQAAGTKTREKFH AMSNL SK
Sbjct: 244 GQAAGTKTREKFHLAMSNLTSK 262

[Close]

BLAST of ClCG02G007840 vs. NCBI nr
Match: gi|659082719|ref|XP_008441996.1| (PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo])

HSP 1 Score: 416.8 bits (1070), Expect = 3.2e-113
Identity = 224/262 (85.50%), Postives = 230/262 (87.79%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVS+LATEREI+EFFSFSGEIEHIEIQCE+GES+TAFVTFRDPKALEIALLL
Sbjct: 4   QTRTVQVKHVSNLATEREINEFFSFSGEIEHIEIQCEQGESRTAFVTFRDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVDQ VSISP ENHVPRREMQ                      DS SQPSSGKMYV
Sbjct: 64  SGATIVDQTVSISPVENHVPRREMQ----------------------DSGSQPSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVA VLAKGS IGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVANVLAKGSVIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQ LHVSDKT AAIFAAERKL++TGSAVKTSKYVTA AAWLNGAFGKVAKA
Sbjct: 184 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLSDTGSAVKTSKYVTASAAWLNGAFGKVAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISK 264
           GQAAGTKTREKFH AMSNL SK
Sbjct: 244 GQAAGTKTREKFHLAMSNLTSK 243

[Close]

BLAST of ClCG02G007840 vs. NCBI nr
Match: gi|778692464|ref|XP_011653468.1| (PREDICTED: protein vip1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 2.7e-112
Identity = 222/266 (83.46%), Postives = 232/266 (87.22%), Query Frame = 1


Query: 2   QTRTVQVKHVSDLATEREIHEFFSFSGEIEHIEIQCERGESKTAFVTFRDPKALEIALLL 61
           QTRTVQVKHVS+LATEREI+EFFSFSG+IE IEIQCE+G+S+TAFVTFRDPKALEIALLL
Sbjct: 4   QTRTVQVKHVSNLATEREINEFFSFSGQIERIEIQCEQGDSRTAFVTFRDPKALEIALLL 63

Query: 62  SGATIVDQIVSISPAENHVPRREMQEVRVVDNAACLTPTENNFPSIEDSASQPSSGKMYV 121
           SGATIVDQIVSISP ENHVPRREMQ                      DS SQ SSGKMYV
Sbjct: 64  SGATIVDQIVSISPVENHVPRREMQ----------------------DSGSQSSSGKMYV 123

Query: 122 NRAQEVVATVLAKGSAIGQDAMNKAKAFDEKHRLTASASAKVLSFDRRVGLTEKLTVGIS 181
           NRAQEVVA VLAKGSAIGQDAMNKAKAFDEKH+LTA+ASAKVLSFDRRVGLTEKLTVGIS
Sbjct: 124 NRAQEVVANVLAKGSAIGQDAMNKAKAFDEKHQLTANASAKVLSFDRRVGLTEKLTVGIS 183

Query: 182 VVNEKVKSVDQKLHVSDKTMAAIFAAERKLNNTGSAVKTSKYVTAGAAWLNGAFGKVAKA 241
           VVNEKVKSVDQ LHVSDKT AAIFAAERKLN+TGSAVKTSKYVTA AAWLNGAFGK+AKA
Sbjct: 184 VVNEKVKSVDQNLHVSDKTRAAIFAAERKLNDTGSAVKTSKYVTASAAWLNGAFGKIAKA 243

Query: 242 GQAAGTKTREKFHSAMSNLISKVRTP 268
           GQAAGTKTREKFH AMSNL SKV  P
Sbjct: 244 GQAAGTKTREKFHLAMSNLTSKVSFP 247

The following BLAST results are available for this feature:

BLAST of ClCG02G007840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BPA1_ARATH	8.5e-50	43.03	Binding partner of ACD11 1 OS=Arabidopsis thaliana GN=BPA1 PE=1 SV=1	[more]
VIPI_SCHPO	2.1e-08	21.88	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1...	[more]

BLAST of ClCG02G007840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNE8_CUCSA	6.6e-134	96.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431170 PE=4 SV=1	[more]
A0A0A0KYL6_CUCSA	1.6e-111	83.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G188980 PE=4 SV=1	[more]
W9QLV2_9ROSA	6.6e-110	79.92	Uncharacterized protein OS=Morus notabilis GN=L484_014722 PE=4 SV=1	[more]
M5VRI4_PRUPE	6.6e-110	78.71	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009644mg PE=4 SV=1	[more]
A0A067L6H7_JATCU	3.3e-109	80.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02699 PE=4 SV=1	[more]

BLAST of ClCG02G007840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G32450.1	4.3e-100	73.18	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	6.4e-56	46.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	3.0e-53	43.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	2.8e-51	43.43	binding partner of acd11 1	[more]
AT1G67950.3	1.1e-44	38.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of ClCG02G007840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468279\|ref\|XP_004151849.1\|	9.4e-134	96.18	PREDICTED: uncharacterized protein LOC101206093 [Cucumis sativus]	[more]
gi\|659125669\|ref\|XP_008462804.1\|	1.8e-132	95.42	PREDICTED: uncharacterized protein LOC103501087 [Cucumis melo]	[more]
gi\|659082717\|ref\|XP_008441995.1\|	3.3e-126	91.98	PREDICTED: uncharacterized protein LOC103485992 isoform X1 [Cucumis melo]	[more]
gi\|659082719\|ref\|XP_008441996.1\|	3.2e-113	85.50	PREDICTED: uncharacterized protein LOC103485992 isoform X2 [Cucumis melo]	[more]
gi\|778692464\|ref\|XP_011653468.1\|	2.7e-112	83.46	PREDICTED: protein vip1-like isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G007840.1	ClCG02G007840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..66 score: 1.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 score: 2.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 4..78 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 2..82 score: 2.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 2..86 score: 2.58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G007840	Csa2G431170	Cucumber (Chinese Long) v2	cuwcgB123
ClCG02G007840	MELO3C024750	Melon (DHL92) v3.5.1	mewcgB090
ClCG02G007840	Cla006792	Watermelon (97103) v1	wcgwmB208
ClCG02G007840	Cla97C02G034490	Watermelon (97103) v2	wcgwmbB138
ClCG02G007840	Bhi10G001226	Wax gourd	wcgwgoB299
ClCG02G007840	CSPI02G27320	Wild cucumber (PI 183967)	cpiwcgB129
ClCG02G007840	Cucsa.017340	Cucumber (Gy14) v1	cgywcgB458
ClCG02G007840	Lsi10G002120	Bottle gourd (USVL1VR-Ls)	lsiwcgB055
ClCG02G007840	CsGy2G026770	Cucumber (Gy14) v2	cgybwcgB120
ClCG02G007840	MELO3C024750.2	Melon (DHL92) v3.6.1	medwcgB088
ClCG02G007840	CsaV3_2G035910	Cucumber (Chinese Long) v3	cucwcgB138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G007840	Silver-seed gourd	carwcgB0930
ClCG02G007840	Silver-seed gourd	carwcgB1026
ClCG02G007840	Cucurbita maxima (Rimu)	cmawcgB484
ClCG02G007840	Cucurbita maxima (Rimu)	cmawcgB530
ClCG02G007840	Cucurbita moschata (Rifu)	cmowcgB481
ClCG02G007840	Cucurbita moschata (Rifu)	cmowcgB528
ClCG02G007840	Cucurbita pepo (Zucchini)	cpewcgB270
ClCG02G007840	Cucurbita pepo (Zucchini)	cpewcgB663