Lsi10G001880 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G001880
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptiontRNA-dihydrouridine synthase, putative
Locationchr10 : 3151828 .. 3161115 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGAAAAACCTAATCCATAAACCCCAAAATAGATTTTCTTTTGCTGCGTAAAATCTCAAAGGGAAAATCCTCGACGGAGCCGGCGGCGGCGATGGGCTCCGTAGCCATCGTCATCGTTAGGTTATGAGATCCCCTTCCAATTCTCACCTTCATCTCAAAACTATATTCTCTCTCCGTCAGTCTCTCATGGCTTCCTCTTTCACACAAACCCTTAAACCAGATTTACCTCAAGACCTGGACGACCTTCTCTGCTCCGATTCACAGAAACAGCAACAAGAGGAATGCTTGTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGTTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGACGAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCTATGGTTGATAATTCGGAGCTACCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGGAACATGGAATTTACCACTTGTCAGGTATGTGACAATTTAAAGCCATTCTATTGTGTTGACAACTTGAATTCTCTAAGGTATTGATGTATGTGTCCGGCTGCTATTTATTGATCGAAAGCTGATTCTAGGTTATGATCTTGTCTGTATTATTGTTTAAAGTCTATTCTTCATTATTTTTTAATGTTGGAATGATTTGTAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTACGTCGACCTTAACCTTGGGTAATCTCTATTAGTCTAATTTGTATTCAGTTGGGTAATTGTGACTTCTTATAATTCTCGTCGGTTGATGGAGTAAGGATTTGTTCTCCAAAAGACTTTTTTGTTTGTTAAGATTGTGGATTGTTCCCAAGTACCTTTTTGAATAAGTAACGAAACTACAAAAGAAGGGAGCCCCCAATAGGAGGATTTACAGAAGACTTCTCCAATTAGAGAGGAAGAAAGAAAAGCTATAGTAATGAAAAATAGGGGAGCATTTACACCAAGTCACACAAACTAACTAATAGCCTCGAAAAATCCTTAAAAGATTTTTCTATTACGTTGTTGCCAAATGGTCCAACAAAGAGCTCTTACAAAATGTTCCCACACAAGCTTCTTTTCCTTTTTGAAGGGATGACCGCTCGAAGTATAAGCAAAGAAGATCTTTGGGTCCTCTGGTAGGGCCATATGCCAAAAAATTAAGAATTATATTGGTTATTCTAAAATTTCTTACAAAAACACAAGCAGTGAAGAGATGATTTTGACTTTTGGGATTCCAAGCCATTTTACAAATAATGCACCAGTCGGGAGATAAATTGCAGTGAGAAAGTCTTCTCTGAAGCTTGTCATTTGTGTTGATGGTCTTTTGTGATAGGTCCCAGATGAAGAATTTAATTTTTGATTTTTGATTTTTTTTTTGAGAAATGTTATTTCCAAATAAATCATATAGTTCAGGAAAAGTCTCATTGCTAGCTTGATGGAGATCTTTTAGGAGGGAACTGATTGAAAATACATCTTTTTCTCCATTTTTCAAATACCTCTGTCCGGTCTCGGGGATAAAGTGACATCCTCATGGATTTGCACAATGGAGGGTAACTCGTTAATATCAGGTTCCCTCAGATACCTTCTAAGCTAAAGGGTCTTGAAGCACAAGTGCACGGGTCAAGTTATAATATAGTTTAAATTGTCTGGGACAGAGTATCGTCTTTAGAGAATCAGGTATTTGAATCTCCTAGCTATTAAAATGTTTTCAGTTCTATCTAGAAATTCGACAGTGATGATTTTGAACTTAAACTAAAAACAAGAAAAGAGGTGCAAACAACTATGAAAGAATGCAAGCAAAAAGACATCCTAGGATATTGATTTCGCTAAAGAACGGTTGAATTTCACCTATCAAGTTTTGAATCAATTACTATCAATTATCTAGTTCTCGAAGTCTTTTTGTTGGGCCTTTTTGTGATTATCCGAGCTTTGTCTGGGACTCGTTTTTCCAGATGTTTGGTATGATATATGCTCGTCACAGAGATGTTAAAGACATGATCGAGAAGTTCCTCCTCAATTTGCCGTTCGGGGAGAGAGGCTGTTTTCTTTGGCTTGCTAGTGTTTGTGCTATCGTTCTGGTGTTGTGGGGTGAGAGGAATAGTAGGGTGTTTAGGGGGGTTGAGAGGGAAGCTAGAGATATATGGTCTCTTGTTCATTTTCATGTTTCTCACTTGGCATTGATTTGAAGGTTTTTTGTAATTATTCTATGAACATGATTTTGTATAGCTGGAGTCCCTTCTTGTAGAGGGAGTCTCCCTTTTTTGTGGGCTTGGTTTTTGTATGCATGTGTATTCTTTCATTTTTCTCAAGGAAAGTTGTTCTTGTAAAAAAAAGTTCCCAAAGTCTTTTATCCAAGCTACCCTTTCGAGGTCAACCTTTTCTCTCACCTAACTACTAGCTTCTAAATCTATTGAAACTAGTTAATTAGACAAGACACTAAGATCCTTCATCATTAATCTCTATTGTTTTCCTATTACCCTAGTATATTCAAACGATAGTTTAGCATGCAAGGTCTAATCTAAAATTTTCTCACTAAAGCAAGACAATAAATCATATGCATGCATAAACTTAAAATTTAAACTTTTGTAACTTAAACAAAAGAATCAATCCTTTTTATTTAAAGTTAAGAATAAGACCCTTTTGGGTCAGGGTGGCAGACAGTTCCGACAAGGAGTCGAACCCAGAATACAACTGTGCCTTTGTAGAGATCGGTTTCCCTAGCTGTCCCGACTGAGTATACAGCTACGATAGCGGTGATAGGGGAAACGGTCATGACCGCGGTACTGGGTAAGATGAAGGACATGATGGACGAGTGAATGATCCAGTTCGCCCAATCCACAAATATCGGTCTTGCCAGTTCAAACGCCACAAGGGCAGCCCCAGAACAAGAATATGCAGGACTTGTCCCTTAAAGCTAAACACTTCAGGGATTTCGGAAAATACAACCCTCACACCTTTGACAGGTCACTGAAGGACCCTATGAAGACAAAGCTGTGGTTGTGAGACAATCTTTCATCATATGAAGTGCCCAGATGACCATAAACTCCCGTGCGCAGTTTTTATGTTGACAGATAACTCGGAGATATGGTGGCGTTCAGCGGAAAAAATGATAGATACAAGCGGGGGGCTAGCATCGTGAGACCAGTTTAAAGAGCATTTCTATGAAAAATACTTTTCGGCCGGCACACGATACAGCAAACAGTCAGAACTTTTGAGTTTGAAGCAAGAGGCTATGTCGATGGAGGAGTATAAGCAAGAGTTTGACAAGTTGGCCCATTTTTTCCCGGAGATGGTGGCCAATGATGCGGCAAGGACGAACAAGTTCATTTAGGGCATGAGGAGCGAATTACAAGGCTTAATACACGCTCATGAGCTCAAAACCTGTGCCGCAGTGCTTCGACCAGCCGTAAGGATTGATGCTGATTCTCAAGAGGGGGACGAGAATAGGAGGTTGTTGGGAGTAGGGACTTCTGCGGGATAGAAAAGGAAGACAGAGCAGAAGGCTTTCGAGCCTCAGCAGAAGAGTCAACATTCAAATAGTTCGTTCCAACATTTCAAGCAGCAGGCTACACGCTCATGAGCTCAAAACCTATGTCGCAGTGCTTCGACCAGCCGTAAGGATTGATGCTGATTCTCAGGAGGGGGACGAGAATAGGAGGTTGTTGGGAGTAGGGACCTCTGCGGGACAGAAAAGGAAGACAGAGCAGAAGGCTTCCGAGCCTCAGCAGAAGGGTCAACATTCAGATAGGTCGTTCCAACATTTCAAGCAGCAGGCTACTGAGTCAGGAGGGGCTTGGGAGAGATAAGCCCGTCTGTAAGTCTTGTGGAAAGCGACACTAGGGGTGTTGTTTGGCTCGCACAGGGACATGCTATAGGTCCAAGCAGGAGGGGCATATTGCTGAGTCTTGCCATGGTGTTCAGTCTGCTAGAAGCAGGGGTCAGCCCTTGAGTGCTCATTAGGGGAGTTCGAACCGTCAGCAACAGAAGGTCATGTTTATTCAACCACTCGACAGGAGGCTGAGAAGTCAAGCATTATGGTGACAGGTACGCTCCCAATGTTGGGACATTATGCATTGGTGCTGTTTGATTCTGGCTCATTCCATTTGTTTATATCATCAGTATTTGTGAAGTATGCTATGTTAGAATTAGAACCTTTGCATTATGTCTTATCAATTTCTACTTCGTCTGGAGAAATTATGTTAGCAAACGATAAGATAAAAGCATGTCACAGTAATAGTAAACCATACGCTAGATGTGACTTTGATAGCTGTGGACATGCGTGATTTTGGCGTTATATTAGATATGGATTGGTTGGCTGCTAACTGTCACAATCGTACTTCACCAAACGATTGTGCGGCACTTGTTCTCGCTCAGGAACAAGTCAGCCAATTCGAATTCGGATCGCCTACGGCACACCGGGTGCCTTTCGCAACCTCCATCCCCGTTTCTAGAGAAAACGGTTTTAGAAAACAGGTTTAGAGAAAAAGGTTTTCGCAAACAATTTAGAAGAATGTTTGAGAAAAAGATTTGTCGTAAGACTAGAAAGCAAACAAGGGACAACAACGGCTTAATAGCTTACAACTCTCGGGTATGCAAGTATGATGATTAGTCTCACTCGCATATAGTACATTCTAAGTTTTTACAAGATTGGCACGGTTGCACGTACAAAGCGTTACGCTGTCGCAAGAAATGAAAAGTAAAGGAAAGCAATTAAACATACATAATGAAATACATAATATGAAAGCATGATGACAAAGGGGTTGGAATGGTAGTGTGGTCATGGGCAACACGCCCTGGACAAGCATGACCGTGACATCCTCCCCCACTTAAATGGTTGACGTCCCTGTCAATCGACGCTGTTCAAACTCAGCAATCTTGGCAGCAGCTTGTTGCAGGTCGTCAACACGTTCCCAACTGATCTCTGCATCTGGGAGTCCTTTCCACTTGACGAGGAACTCCTGAACGTCTTTTCTGGGTCTACCCACTCGGCGGGTACGTTCAGCTAAAACTTCTTCCACTTCTTTGTCCTTAGGGTTGGACATTGTAACTGGAGGTCTGACTGACTTGTTACGAGTTTCATCGTCTGGATCGAGATGATGGGGTTTCAAGTTGCTTATGTGGATGACAGGGTGAATCTTCATCTACGGCGGCAGTTGAACCTGATAGGATACCTTCCCGACCTTCTTGATTACTTCAACAGGACCCTTATATTTTCGTACAAGACGTTGATCTCTTTTACTTCGAAATCGGAGCTGTTCTTGTCTCAGTTTGATCAACACCTTGTCTCCGGCTTGGAATTCCAGTGCTCGACGTTTTTGATCAGCCCACTTCTTCATTCGTTTAGACGCCTTCTCTAAATAGGCTCGAGCCATCCGCAGTTTGGTTCCACTCCTTCGTGAAGTTGAACGCTTGGGGGCTCTTCCCTGCATATGGATGGTCCACAATGTGAGGCATGAGTGGTTGTCTCCCACTCACTATCTCGAAAGGAGTCTTTCCGGTAGACGAGCTCTTCTGACAGTTAAAGCTAAATTGTGCCACATCAAGCATCTCGACCCAATTCTTCTGCCTGACATCTATAAAATGACGCAAGTATTCCTCGAGCATACTATTGAATCTTTCTGTCTGTCCATCAGTTTGAGGGTGATAGCTCGACGAGATATTTAAATTCGAGCCTAGCATTTGAAACAGCTCCGTCCAGAAGGTTCCTGTGAATTGGCCATCTCTATCGTTCACAATACTCGCTGGGACGCCCCAAAACTTGACAACATTCTTAAAGAATAGATGTGTTGTCATTTCGGCTGAGCACATCTTTGTTGTTGGGACAAACGTGGCGTATTTTGAAAATCTGTCTACCACTACGAGAATTGCTTCAAATTCTCCGACTTTGGGTAAGTGGGTAATGAAATCAAGGGAAATACACGTACAGGTGACGTGTATGACCGAATGAAGTTTAGTTTCGCATGAGCTCAGTTCGGTTGAAGACGAGAGAACCTCGCCTAAGGTCCGACGAAGTTTCAAAAAAAGAATGGAGAAAAGAATATTGGGGCTTGAGTTCCCCTTAAGGCTGCCCATGTACGAGTAAATGTCATGGTGCCGCACGGTTAGAGAAGCCCGACCGTGACACTAACCATGCCAGTATAGACTGTTCCCGCAAGGAGGTGATCTTGGCCAGTGTGGTTGACACTAGAGAAACTGAGGTTGCCTTGACTTTAGAGCCAGTGGAAAGAAATTATCCAGATGTCTTTCCAGAGGATCTCCTGGGTTTGTCACTGTATCAGGAGATAGCTTCGCTATCAAGTTGGAGCTAGGTATAGCTTCCATCTTGAAGGCTCCTTAAGAATGGCTCTAGCAGAGTTGAAGGAGCTCAAGACTCGGTTCCGAGAGTTGCTGAATAAGGGTTTTATACGCATGAGTGTGTCACCTTAGGGTGCACTAGTGTTGTTTGTGAAGGACGGGTCATTATGCCTTTGTTTTGACTATAGAGAGTTGAATAAAGGTTTTATGTTATTTAAACTTCTAGTTTGTTGGAATTCTTTACTTTAAATAAAAAGGATCGGTTCTTTTGTTTAAGTTGCAAAAGGTTAAATTTCAAGTTCATATAGTAACGTTCAGTTAGTAAACGTTAGAAAGTTGGGTCGTTACAGTCGTGGCACTAGGTTACACCGTCGTGACGCTGTCCTATTTTGCACTCTTGGGTTTCTACCATCAAGCCTAGCATTAACGCTTGTTGGGCGCCTTTTTCTTTATGTTTTCCTCTCTAAGGTTAAAATCGAGCCTAGCATTGCACTACCCAAGGTTCTTTTCTTCATATTTTCACCTCAATTAGTCCATTCTGGTCCAAATTCTAGGTTCCTACAAATTCAACAAATAAAAGCATCACGAACACAACTAGCCAACAAAACCTAAGAAGCACTTTTTTTCAGTTCCATCAAACATTTTCCATATCCATGTCAATAGTGGCCCCATCCTTGCACAGGGAGAGATCAGATGTTAGAGGAAATCTTCTATAAAGAGATTCATCCCCAGCCTAAACATCCTTCCTCAAAGATAAACCTAAAGCATCCCCAACAGTATAGTTCATTTTGTCACGGATTTGATAGGTTTCAAATTCAGGCTATTATGGGTGTAAATGTGAACACCCTTTTACCAATTATAGTCTCTCTTCTCTTATTTCGAATTGGAGATCTTGTTTTTGTAACACACCTATAAGTGATTGGGAGTCTTTTAACTCCATTTATTTCAAAAGTGTTTTTCTTTTTAAAAAGAACACACTGAAAACCCTTCAATGGTTAGAGTAGCTTTTACATATAACTTCTAACTGATCTAGGAATTAAAATTGGAAAACTTTTCTAAAAGAAATTCATTTTCGGCTTATTTTATCCTTTTTGTGCTATTTACTGAATTGTTCTCCATTTCAGTTGCATCCAAACTATAGGGGTAAAAGGAAAGAAAGTATAATCCGATCAAATATATATATGTATAAGTTTGAACAGGTTTGCAAAGCACTGGAAGTGGTGCAGCTGGTTAAAAATTTGCTTTCATATCCTTGTGGCATGAGTTTGACCCTCCGACCTCCAGATTGAATCTTTTTAAATATATTGGTGGTTTTCCTTCTGTCCAGCCAATTTTACACAGCCCACGGCCCATTTGCAGCTCACAGGCCCTTCGCCCAACGAACGCGCTCTTTGCCATTAACCAGATGGTGAACTGCTTCAAAATGCTAAACAGTTTGGTCGGTTTGGTTATGTATATGTGTGACGATTCGGTTCGGTTTCTAAATTTTTGCCTATATTTAGTGGTTCAGTTTTAATTTGACGCTCAAGCTGGATCGATTACACCCCCAGTCTAAACTAACAAAAAAATCAAGGATAATCTGAGTTCACGTCCTTTCCAAATGTGTTGCATACCAAATATGTTTACTGTGTCCGTATTTTTCACTTAAGGTTTCTGAACTTCAATTGAGTGGTCTAGTAATTTCATGCAGGTGTCCTCAGCGTATAGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAAAAACTGTCTTCCAATCTTCAGGTTCCTGTTTCATGCAAAATCCGAATCTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTCAAAAATGCTGTACGAATCCCAGTTCTTGCCAATGGGAATATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGGGTTGAAGGTGTGCTTTCAGCAGAACCCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATTGAGGGCTGTGAAGAAAATACTCGAGACGGTGACCTGAATCAAGCTGATCTGCTGGTGGACTACCTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACGTTTGAATTTCTTTACAGTATGGTGGAGCGGCTAAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATGCTTGACTGCTTCCACAGATTATTGATTGATAGGCTTACTGGTCTTAACATAAAGATTCTTTGCGAAAATTAGATTCATTGTGTTGTTGTATCACTAATATTCACATAAAATTGTCTTTCTTCAAATCAGCTTGGGCACAGTGAAGAAAGAAAAGATTTTGTATTTATTGTTGCGAATTGCACACCCTTAATTGATTTGACTAGGGAAGAGATAGAGAGTCAACATTACCTTTTGGCTTTGCCCATATTATCTACCATGTTGTTTACCATTCTCTTAAACTTTTTTTTTTCTTTTTTTTTTTTTTTTAAGAGTTCAATTGTTAAGTAGCTATGAGAGTGTTATGGATGTGTCAACCTAGTTGAGATATCTTGATGCATCTGTTGATTCCCTCGCCCTATGATTCTTTTTGCTTATAACGTATCATTGTAATTTGACTGTTA

mRNA sequence

TGTGAAAAACCTAATCCATAAACCCCAAAATAGATTTTCTTTTGCTGCGTAAAATCTCAAAGGGAAAATCCTCGACGGAGCCGGCGGCGGCGATGGGCTCCGTAGCCATCGTCATCGTTAGGTTATGAGATCCCCTTCCAATTCTCACCTTCATCTCAAAACTATATTCTCTCTCCGTCAGTCTCTCATGGCTTCCTCTTTCACACAAACCCTTAAACCAGATTTACCTCAAGACCTGGACGACCTTCTCTGCTCCGATTCACAGAAACAGCAACAAGAGGAATGCTTGTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGTTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGACGAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCTATGGTTGATAATTCGGAGCTACCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGGAACATGGAATTTACCACTTGTCAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTACGTCGACCTTAACCTTGGGTGTCCTCAGCGTATAGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAAAAACTGTCTTCCAATCTTCAGGTTCCTGTTTCATGCAAAATCCGAATCTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTCAAAAATGCTGTACGAATCCCAGTTCTTGCCAATGGGAATATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGGGTTGAAGGTGTGCTTTCAGCAGAACCCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATTGAGGGCTGTGAAGAAAATACTCGAGACGGTGACCTGAATCAAGCTGATCTGCTGGTGGACTACCTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACGTTTGAATTTCTTTACAGTATGGTGGAGCGGCTAAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATGCTTGACTGCTTCCACAGATTATTGATTGATAGGCTTACTGGTCTTAACATAAAGATTCTTTGCGAAAATTAGATTCATTGTGTTGTTGTATCACTAATATTCACATAAAATTGTCTTTCTTCAAATCAGCTTGGGCACAGTGAAGAAAGAAAAGATTTTGTATTTATTGTTGCGAATTGCACACCCTTAATTGATTTGACTAGGGAAGAGATAGAGAGTCAACATTACCTTTTGGCTTTGCCCATATTATCTACCATGTTGTTTACCATTCTCTTAAACTTTTTTTTTTCTTTTTTTTTTTTTTTTAAGAGTTCAATTGTTAAGTAGCTATGAGAGTGTTATGGATGTGTCAACCTAGTTGAGATATCTTGATGCATCTGTTGATTCCCTCGCCCTATGATTCTTTTTGCTTATAACGTATCATTGTAATTTGACTGTTA

Coding sequence (CDS)

ATGAGATCCCCTTCCAATTCTCACCTTCATCTCAAAACTATATTCTCTCTCCGTCAGTCTCTCATGGCTTCCTCTTTCACACAAACCCTTAAACCAGATTTACCTCAAGACCTGGACGACCTTCTCTGCTCCGATTCACAGAAACAGCAACAAGAGGAATGCTTGTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGTTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGACGAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCTATGGTTGATAATTCGGAGCTACCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGGAACATGGAATTTACCACTTGTCAGGAGGACCGTCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTACGTCGACCTTAACCTTGGGTGTCCTCAGCGTATAGCAAGGCGAGGAAATTATGGGGCTTTTTTAATGGATAACTTACCTCTTGTAAAAGCAATAGTAGAAAAACTGTCTTCCAATCTTCAGGTTCCTGTTTCATGCAAAATCCGAATCTTCCCAAATCTACAAGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGTAAGAAATTCCGAGCTAATTGGAGTGCCATTAGTGCTGTCAAAAATGCTGTACGAATCCCAGTTCTTGCCAATGGGAATATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGGGTTGAAGGTGTGCTTTCAGCAGAACCCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACTGCCGAATGGATTGAGGGCTGTGAAGAAAATACTCGAGACGGTGACCTGAATCAAGCTGATCTGCTGGTGGACTACCTGAAGCTTTGTGAAAAATACCCTGTCCCATGGAGAATGATCCGTTCGCACGTACACAAGTTATTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGACTTCAATGCACAATCCAAGCTCACGTTTGAATTTCTTTACAGTATGGTGGAGCGGCTAAGAGAGTTGCAGGTAAAAATTCCTCTTTATATCAAGGATTCTCATGCATCTGCAATTTCATCCAATGCTTGA

Protein sequence

MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAISSNA
Homology
[Close]
BLAST of Lsi10G001880 vs. Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 2.6e-79
Identity = 142/298 (47.65%), Postives = 194/298 (65.10%), Query Frame = 1 

Query: 87  WTK-LGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 146
           W++ LG  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69

Query: 147 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 206
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG YGAFL +   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129

Query: 207 KAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 266
           + ++      L VPV+CKIR+FP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189

Query: 267 NWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAE 326
           +W  I AV+ AV IPV ANGNIR ++DV  C+Q+TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 327 WIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 382
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREE 291

[Close]
BLAST of Lsi10G001880 vs. Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.4e-79
Identity = 141/298 (47.32%), Postives = 195/298 (65.44%), Query Frame = 1 

Query: 87  WTK-LGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 146
           W++ LG  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69

Query: 147 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 206
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG+YGAFL +   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129

Query: 207 KAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 266
           + ++      L VPV+CKIR+FP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189

Query: 267 NWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAE 326
           +W  I AV+ AV IPV ANGNI+ ++DV  C+Q+TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 327 WIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 382
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREE 291

[Close]
BLAST of Lsi10G001880 vs. Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.2e-78
Identity = 139/288 (48.26%), Postives = 189/288 (65.62%), Query Frame = 1 

Query: 96  IVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTTCQEDRPLFVQ 155
           +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    C EDRPL VQ
Sbjct: 20  VVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQ 79

Query: 156 FCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSN 215
           FCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG+YGAFL D   L++ ++      
Sbjct: 80  FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEK 139

Query: 216 LQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKN 275
           L VPV+CKIR+FP +  T+ YA+MLE AGC LL VHGRT+++K      A+W  I AV+ 
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 199

Query: 276 AVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTR 335
           AV IPV ANGNI+ ++DV  CL++TGV+GV+SAE  L NPALF G   A W         
Sbjct: 200 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 259

Query: 336 DGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 382
                  +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 260 -------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREE 291

[Close]
BLAST of Lsi10G001880 vs. Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.3e-69
Identity = 139/303 (45.87%), Postives = 192/303 (63.37%), Query Frame = 1 

Query: 87  WTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTT--C 146
           + K+GRPK I+APMVD SELP+R+L R+ GA+  Y+PM HSR+F E+E YRN  F+T   
Sbjct: 12  YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTI 71

Query: 147 QEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVK 206
            E+RPL +QFC NDP+++L+AA+   PYCD VD+NLGCPQ IA++G YG+FL +N  L++
Sbjct: 72  PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131

Query: 207 AIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRAN 266
           +I+ KL + L +PV+ KIRIFP+ Q T++YA+M+  AG S+LAVHGR R++K      A+
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191

Query: 267 WSAISAV-KNAVRIPVL-ANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTA 326
           W  I  + KN     VL ANGNI H +D+  C++ TGV+GVLSAE  L NP +F    + 
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPSSP 251

Query: 327 EWI------EGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHP 380
                    + CEE      + +  L  DY  L          I+ H+ KL+     IH 
Sbjct: 252 LMTLYPRIDDMCEEYL--NIIREFKLESDYSSL--------SAIKGHLFKLMRPLLSIHT 304

[Close]
BLAST of Lsi10G001880 vs. Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-64
Identity = 130/313 (41.53%), Postives = 188/313 (60.06%), Query Frame = 1 

Query: 89  KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQE-- 148
           K+GRP  IVAPMVD SEL +R+L R+YGA  AYTPMLH+++F  ++KYR   +++     
Sbjct: 25  KIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSS 84

Query: 149 -DRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKA 208
            DRPL VQFCANDP+ LL AA+ VE  CD VDLNLGCPQ IA++G+YG+FLM+   L+  
Sbjct: 85  VDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHN 144

Query: 209 IVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANW 268
           ++  L  NL+VPV+ KIRIF + + ++NYA+M+ DAG   L VHGR R++K  K   ANW
Sbjct: 145 LINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANW 204

Query: 269 SAISAVKNAV--RIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFAGFRTAE 328
             I  +++ +       ANGNI + ED+  C++  G + V+SAE  L NP +F   +T  
Sbjct: 205 ETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQT-- 264

Query: 329 WIEGCEENTRDGDLNQADLLV----DYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIR 388
                    ++    + D ++      +K C++       ++SH  K+L  +   H  IR
Sbjct: 265 -------KNKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIR 324

Query: 389 EDF-NAQSKLTFE 392
                  +K T+E
Sbjct: 325 STLATMNAKATWE 328

[Close]
BLAST of Lsi10G001880 vs. TrEMBL
Match: A0A0A0LTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428390 PE=4 SV=1)

HSP 1 Score: 798.1 bits (2060), Expect = 5.1e-228
Identity = 397/426 (93.19%), Postives = 405/426 (95.07%), Query Frame = 1 

Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDL-PQDLDDLLCSDSQKQQQEECLSLTK 60
           MRS SNSHLHLK IFSL  SLMASS  QTLKPDL PQDLDDLLCS S KQ Q E  SLT 
Sbjct: 1   MRSLSNSHLHLKYIFSLPNSLMASSLIQTLKPDLAPQDLDDLLCSPSHKQPQHESSSLTN 60

Query: 61  S--NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120
           S  NDST LLGSP+GYLS ESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  STSNDSTPLLGSPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180
           EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARM 240
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIFPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQE 300
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDV++CLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQE 300

Query: 301 TGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPW 360
           TGVEGVLSAE LLENPALFAGFRTAEWIEG EENTRDG+L+QADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHAS 420
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVK+PLYIKDSHA 
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHAL 420

Query: 421 AISSNA 424
           AISSNA
Sbjct: 421 AISSNA 426

[Close]
BLAST of Lsi10G001880 vs. TrEMBL
Match: A0A067GH93_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1)

HSP 1 Score: 656.0 bits (1691), Expect = 3.1e-185
Identity = 315/405 (77.78%), Postives = 357/405 (88.15%), Query Frame = 1 

Query: 22  MASSFTQTLKPDLPQDLDDLLCSDS-------QKQQQEECLSLTKSNDSTLLLGSPSGYL 81
           MA + T+TL  D  QD DDLLCSDS       ++ + EE  SL ++  S+L   SP GYL
Sbjct: 27  MAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPRGYL 86

Query: 82  SGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENE 141
           SGE+R ERAWAHWTKLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFTE+E
Sbjct: 87  SGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESE 146

Query: 142 KYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGA 201
           KYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGNYGA
Sbjct: 147 KYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGA 206

Query: 202 FLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRD 261
           FLMDNLPLVK++VEKL+ NL VPVSCKIR+FPNLQDTI YA+MLEDAGCSLLAVHGRTRD
Sbjct: 207 FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 266

Query: 262 EKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPA 321
           EKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG EGVLSAE LLENPA
Sbjct: 267 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 326

Query: 322 LFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKI 381
           LFAGFRTAEWI G EE ++DG+L+QADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+WF+I
Sbjct: 327 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRI 386

Query: 382 HPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAI 420
            P +RED NAQ++LTFEFLY++V+RLREL V+IPLY KD+  + I
Sbjct: 387 QPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Lsi10G001880 vs. TrEMBL
Match: A0A067KAE0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12444 PE=4 SV=1)

HSP 1 Score: 655.2 bits (1689), Expect = 5.4e-185
Identity = 310/411 (75.43%), Postives = 357/411 (86.86%), Query Frame = 1 

Query: 22  MASSFTQTLKPDLPQDLDDLLCSDSQKQQQE------ECLSLTKSNDSTLLLGSPSGYLS 81
           MASS T  L  D PQDLDDLLCS+ Q+QQQE         S      S+  L     YL+
Sbjct: 1   MASSLTHALAQDPPQDLDDLLCSNPQQQQQEIQQTEEHTSSSFPDTASSCCLDPVGRYLN 60

Query: 82  GESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEK 141
           GESR+ERAWAHWTKLGRPKLIVAPMVDNSELPFR+LCRKYGAEAAYTPMLHSRIFTENEK
Sbjct: 61  GESRVERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEK 120

Query: 142 YRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAF 201
           YR+ EFTTC+EDRPLFVQFCANDP++LLEAARRVEPYCDYVD+NLGCPQRIARRGNYGAF
Sbjct: 121 YRDQEFTTCKEDRPLFVQFCANDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAF 180

Query: 202 LMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDE 261
           LMD LPLVK++VEKL+ NL VPVSCKIR+FP L+DTINYARMLE+AGCSLLAVHGRTRDE
Sbjct: 181 LMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGRTRDE 240

Query: 262 KDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPAL 321
           KDGKKFRA+W AI AVK+A+RIPVLANGNIRHM+DV +CL+ETG +GVLSAE LLENPAL
Sbjct: 241 KDGKKFRADWKAIKAVKDALRIPVLANGNIRHMDDVQSCLEETGADGVLSAESLLENPAL 300

Query: 322 FAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIH 381
           FAGFRT EW+ G EE+  DG L+QADLLV+YL+LCEKYPVPWRMIR+HVHK+LG+WF+IH
Sbjct: 301 FAGFRTTEWVVGDEESNIDGKLDQADLLVEYLQLCEKYPVPWRMIRAHVHKMLGEWFRIH 360

Query: 382 PHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKD----SHASAISSN 423
           PH+RE+ NAQS LTFEFLY++V++LREL ++IPLY+K+    +H + +S+N
Sbjct: 361 PHVREELNAQSILTFEFLYNIVDKLRELGLRIPLYVKETNVGTHVAGVSAN 411

[Close]
BLAST of Lsi10G001880 vs. TrEMBL
Match: V4SQ46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025630mg PE=4 SV=1)

HSP 1 Score: 653.3 bits (1684), Expect = 2.0e-184
Identity = 314/405 (77.53%), Postives = 356/405 (87.90%), Query Frame = 1 

Query: 22  MASSFTQTLKPDLPQDLDDLLCSDS-------QKQQQEECLSLTKSNDSTLLLGSPSGYL 81
           MA + T+TL  D  QD DDLLCSDS       ++ + EE  SL ++  S+L   SP GYL
Sbjct: 27  MAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPRGYL 86

Query: 82  SGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENE 141
           SGE+R ERAWAHWTKLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFTE+E
Sbjct: 87  SGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESE 146

Query: 142 KYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGA 201
           KYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGNYGA
Sbjct: 147 KYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGA 206

Query: 202 FLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRD 261
           FLMDNLPLVK++VEKL+ NL VPVSCKIR+FPNLQDTI YA+MLEDAGCSLLAVHGRTRD
Sbjct: 207 FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 266

Query: 262 EKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPA 321
           EKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG EGVLSAE LLENPA
Sbjct: 267 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 326

Query: 322 LFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKI 381
           LFAGFRTAEWI G EE ++DG+L+QADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+WF+I
Sbjct: 327 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRI 386

Query: 382 HPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAI 420
            P +R D NAQ++LTFEFLY++V+RLREL V+IPLY KD+  + I
Sbjct: 387 QPGVRGDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Lsi10G001880 vs. TrEMBL
Match: A0A061DGP6_THECC (FMN-linked oxidoreductases superfamily protein OS=Theobroma cacao GN=TCM_000679 PE=4 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 2.3e-183
Identity = 310/415 (74.70%), Postives = 363/415 (87.47%), Query Frame = 1 

Query: 12  KTIFSLRQSLMASSFTQTLKPDLPQ-----DLDDLLCSDSQKQQQEECLSLTKSNDSTLL 71
           K +FS   SLMA +  +T++ D PQ     D D LLCS+ Q+ Q+E+  S ++ +D+   
Sbjct: 17  KPLFSNPISLMAQTQIRTIRSDPPQNDNSNDDDALLCSNPQQNQEEQ--SSSQVDDTPSS 76

Query: 72  LGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLH 131
           +GSP  YLS ESR+ERAWAHW KLGRPKLIVAPMVDNSELPFR+LCRK+GAEAAYTPMLH
Sbjct: 77  IGSPGRYLSWESRVERAWAHWAKLGRPKLIVAPMVDNSELPFRMLCRKFGAEAAYTPMLH 136

Query: 132 SRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRI 191
           SRIFTENEKYRN EFTTC+EDRPLFVQFCANDPDVLLEAARRVEPYCDYVD+NLGCPQRI
Sbjct: 137 SRIFTENEKYRNEEFTTCKEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDINLGCPQRI 196

Query: 192 ARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLL 251
           ARRG YGAFLMDNLPLVK++VEKL+ NL VPVSCKIR+FPNLQDTI YA+MLEDAGCSLL
Sbjct: 197 ARRGYYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL 256

Query: 252 AVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSA 311
           AVHGRTRDEKDGK+FRA+W+AI AVKNA+ IPVLANGNIRHMEDV NCL+ETG +GVLSA
Sbjct: 257 AVHGRTRDEKDGKRFRADWNAIKAVKNALGIPVLANGNIRHMEDVQNCLEETGADGVLSA 316

Query: 312 EPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHK 371
           E LLENPALFAGFRTA+W+   E++  +G L+QA+LLV+YLK+CE+YPVPWRMIRSHVHK
Sbjct: 317 ESLLENPALFAGFRTADWVGNNEKDNIEGKLDQAELLVEYLKICERYPVPWRMIRSHVHK 376

Query: 372 LLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAISS 422
           +LGDWF+I PH+RED N+QS+LTFEFLY++V++LREL V+IPLY KD+ A+  S+
Sbjct: 377 MLGDWFRIQPHVREDLNSQSRLTFEFLYNLVDQLRELGVRIPLYQKDTSAAGSSA 429

[Close]
BLAST of Lsi10G001880 vs. TAIR10
Match: AT5G67220.1 (AT5G67220.1 FMN-linked oxidoreductases superfamily protein)

HSP 1 Score: 612.8 bits (1579), Expect = 1.5e-175
Identity = 296/403 (73.45%), Postives = 339/403 (84.12%), Query Frame = 1 

Query: 11  LKTIFSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQEECLSLTKSNDSTLLLGSP 70
           L+T  SL     A +     KPD  Q LDD+LCS+ +  Q EE +    ++     LGSP
Sbjct: 11  LRTRKSLISQTRAMTQNPDPKPDPSQVLDDILCSEQRDGQIEETVDTAPAS-----LGSP 70

Query: 71  SGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIF 130
           S  LS ++R+ERAWAHW KLGRPK IVAPMVDNSELPFRLLC+KYGA+AAYTPMLHSRIF
Sbjct: 71  SRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIF 130

Query: 131 TENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRG 190
           TE EKYRN EFTTC+EDRPLFVQFCANDPD LLEAA+RVEPYCDYVD+NLGCPQRIARRG
Sbjct: 131 TETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRG 190

Query: 191 NYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHG 250
           NYGAFLMDNLPLVK++VEKL+ NL VPVSCKIRIFPNL+DT+ YA+MLEDAGCSLLAVHG
Sbjct: 191 NYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHG 250

Query: 251 RTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLL 310
           RTRDEKDGKKFRA+WSAI  VKNA+RIPVLANGN+R +EDV NC++ETGVEGVLSAE LL
Sbjct: 251 RTRDEKDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLL 310

Query: 311 ENPALFAGFRTAEWI-EGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLG 370
           ENPA FAGFRTAEW  +  EE   DG L+Q DL+V+YLKLCEK+PVPWRMIRSHVHK+LG
Sbjct: 311 ENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLG 370

Query: 371 DWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIK 413
           +WF+IHP +RE  NAQ+ LTFEFLY +V++LREL  ++PLY K
Sbjct: 371 EWFRIHPQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408

[Close]
BLAST of Lsi10G001880 vs. TAIR10
Match: AT3G49640.1 (AT3G49640.1 Aldolase-type TIM barrel family protein)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-30
Identity = 79/247 (31.98%), Postives = 121/247 (48.99%), Query Frame = 1 

Query: 94  KLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNME------------- 153
           KL++APMV    L FR+L  +YGA+  Y   +      + E+  N+              
Sbjct: 6   KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 65

Query: 154 --FTTCQEDRPLFV-QFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLM 213
             F+TC E++   V Q   +D    L+A+  V      +D+N+GCP+  + +G  GA L+
Sbjct: 66  VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 125

Query: 214 DNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKD 273
               L+  I+  L  NL VPV+CKIR+  +  DT+  AR +E  G   LAVHG  R   D
Sbjct: 126 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHG--RKIAD 185

Query: 274 GKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPALFA 325
             +  A W  I+ V  A+ IPV+ANG++   +D       TG   V+ A   + N ++F+
Sbjct: 186 RPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 245

[Close]
BLAST of Lsi10G001880 vs. TAIR10
Match: AT4G38890.1 (AT4G38890.1 FMN-linked oxidoreductases superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 4.3e-16
Identity = 53/200 (26.50%), Postives = 93/200 (46.50%), Query Frame = 1 

Query: 92  RPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLF 151
           R KL +AP+     LPFR LC+  GA+     M       + +            +    
Sbjct: 337 RDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 396

Query: 152 VQFCANDPDVLLEAARRVEPYC--DYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEK 211
           VQ C + PD +      ++  C  D++D+N+GCP  +    + G+ L++    +K IVE 
Sbjct: 397 VQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIVEV 456

Query: 212 LSSNLQVPVSCKIR--IFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSA 271
            SS ++ P++ K+R   F       +    + + G + + +HGR+R ++  K   A+W  
Sbjct: 457 SSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKS--ADWDY 516

Query: 272 I-SAVKNA-VRIPVLANGNI 286
           I    KNA   + V+ NG++
Sbjct: 517 IYQCTKNATTNLQVIGNGDV 534

[Close]
BLAST of Lsi10G001880 vs. TAIR10
Match: AT3G63510.1 (AT3G63510.1 FMN-linked oxidoreductases superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-10
Identity = 49/179 (27.37%), Postives = 81/179 (45.25%), Query Frame = 1 

Query: 49  QQQEECLSLTKSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPF 108
           Q Q  CL   + N S +   SP   L   +R     + +     P   VAPM+D ++  +
Sbjct: 13  QFQMWCLPSVRPNVSEMFFKSPM--LKPTARFSSTSSPYLP---PSFSVAPMMDWTDNHY 72

Query: 109 RLLCRKYGAEA-AYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAAR 168
           R L R     A  YT M+ +      +   +       +  P+ +Q   ++ + L +AA+
Sbjct: 73  RTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENLAKAAK 132

Query: 169 RVEPY-CDYVDLNLGCPQ-RIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRI 225
             + Y  D ++LN GCP  ++A  G +G  LM    LV   +  +++N  VPV+ K RI
Sbjct: 133 LSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRI 186

[Close]
BLAST of Lsi10G001880 vs. NCBI nr
Match: gi|659125738|ref|XP_008462837.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 808.9 bits (2088), Expect = 4.2e-231
Identity = 399/426 (93.66%), Postives = 410/426 (96.24%), Query Frame = 1 

Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDLP-QDLDDLLCSDSQKQQQEECLSLT- 60
           MRS SNSHL+LKTIFSLR S MASSFTQTLKPDLP QDLDDLLCS  QKQ+Q+E  SLT 
Sbjct: 1   MRSLSNSHLYLKTIFSLRNSFMASSFTQTLKPDLPPQDLDDLLCSHPQKQRQDESSSLTG 60

Query: 61  -KSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120
             SNDS LLLGSP+GYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  SNSNDSKLLLGSPTGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180
           +AAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 DAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARM 240
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIFPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQE 300
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDV+NCLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQE 300

Query: 301 TGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPW 360
           TGVEGVLSAE LLENPALFAGFRTAEWIEG EENTRDG+L+QADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGQEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHAS 420
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVK+PLYIKDSH  
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHVP 420

Query: 421 AISSNA 424
           AISSNA
Sbjct: 421 AISSNA 426

[Close]
BLAST of Lsi10G001880 vs. NCBI nr
Match: gi|778673658|ref|XP_011650036.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 798.1 bits (2060), Expect = 7.4e-228
Identity = 397/426 (93.19%), Postives = 405/426 (95.07%), Query Frame = 1 

Query: 1   MRSPSNSHLHLKTIFSLRQSLMASSFTQTLKPDL-PQDLDDLLCSDSQKQQQEECLSLTK 60
           MRS SNSHLHLK IFSL  SLMASS  QTLKPDL PQDLDDLLCS S KQ Q E  SLT 
Sbjct: 1   MRSLSNSHLHLKYIFSLPNSLMASSLIQTLKPDLAPQDLDDLLCSPSHKQPQHESSSLTN 60

Query: 61  S--NDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120
           S  NDST LLGSP+GYLS ESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  STSNDSTPLLGSPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180
           EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARM 240
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKL+SNLQVPVSCKIRIFPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQE 300
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDV++CLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQE 300

Query: 301 TGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPW 360
           TGVEGVLSAE LLENPALFAGFRTAEWIEG EENTRDG+L+QADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHAS 420
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLY+MVERLRELQVK+PLYIKDSHA 
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHAL 420

Query: 421 AISSNA 424
           AISSNA
Sbjct: 421 AISSNA 426

[Close]
BLAST of Lsi10G001880 vs. NCBI nr
Match: gi|568883448|ref|XP_006494482.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 659.8 bits (1701), Expect = 3.1e-186
Identity = 316/405 (78.02%), Postives = 358/405 (88.40%), Query Frame = 1 

Query: 22  MASSFTQTLKPDLPQDLDDLLCSDS-------QKQQQEECLSLTKSNDSTLLLGSPSGYL 81
           MA + T+TL  D  QD DDLLCSDS       ++ + EE  SL ++  S+L   SP GYL
Sbjct: 27  MAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--ASPRGYL 86

Query: 82  SGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENE 141
           SGE R ERAWAHWTKLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFTE+E
Sbjct: 87  SGEVRAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESE 146

Query: 142 KYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGA 201
           KYRN EFTTC+EDRPLFVQFCANDP++LL AARRVEP+CDYVD+NLGCPQRIARRGNYGA
Sbjct: 147 KYRNEEFTTCKEDRPLFVQFCANDPEILLNAARRVEPFCDYVDINLGCPQRIARRGNYGA 206

Query: 202 FLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRD 261
           FLMDNLPLVK++VEKL+ NL VPVSCKIR+FPNLQDTI YA+MLEDAGCSLLAVHGRTRD
Sbjct: 207 FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 266

Query: 262 EKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPA 321
           EKDGKKFRANW+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG EGVLSAE LLENPA
Sbjct: 267 EKDGKKFRANWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 326

Query: 322 LFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKI 381
           LFAGF+TAEWI G EE+++DG+LNQADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+WF+I
Sbjct: 327 LFAGFQTAEWIVGSEESSKDGNLNQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRI 386

Query: 382 HPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAI 420
            P +RED NAQ++LTFEFLY++V+RLREL V+IPLY KD+  + I
Sbjct: 387 QPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDTDDAEI 429

[Close]
BLAST of Lsi10G001880 vs. NCBI nr
Match: gi|802643850|ref|XP_012079293.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 658.3 bits (1697), Expect = 9.1e-186
Identity = 317/431 (73.55%), Postives = 368/431 (85.38%), Query Frame = 1 

Query: 3   SPSNSHLHLKTI-FSLRQSLMASSFTQTLKPDLPQDLDDLLCSDSQKQQQE------ECL 62
           SP N  +  KT+ F+  + LMASS T  L  D PQDLDDLLCS+ Q+QQQE         
Sbjct: 6   SPHN--ISAKTLLFNSLKPLMASSLTHALAQDPPQDLDDLLCSNPQQQQQEIQQTEEHTS 65

Query: 63  SLTKSNDSTLLLGSPSGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKY 122
           S      S+  L     YL+GESR+ERAWAHWTKLGRPKLIVAPMVDNSELPFR+LCRKY
Sbjct: 66  SSFPDTASSCCLDPVGRYLNGESRVERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRKY 125

Query: 123 GAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDY 182
           GAEAAYTPMLHSRIFTENEKYR+ EFTTC+EDRPLFVQFCANDP++LLEAARRVEPYCDY
Sbjct: 126 GAEAAYTPMLHSRIFTENEKYRDQEFTTCKEDRPLFVQFCANDPEILLEAARRVEPYCDY 185

Query: 183 VDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYA 242
           VD+NLGCPQRIARRGNYGAFLMD LPLVK++VEKL+ NL VPVSCKIR+FP L+DTINYA
Sbjct: 186 VDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYA 245

Query: 243 RMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCL 302
           RMLE+AGCSLLAVHGRTRDEKDGKKFRA+W AI AVK+A+RIPVLANGNIRHM+DV +CL
Sbjct: 246 RMLEEAGCSLLAVHGRTRDEKDGKKFRADWKAIKAVKDALRIPVLANGNIRHMDDVQSCL 305

Query: 303 QETGVEGVLSAEPLLENPALFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPV 362
           +ETG +GVLSAE LLENPALFAGFRT EW+ G EE+  DG L+QADLLV+YL+LCEKYPV
Sbjct: 306 EETGADGVLSAESLLENPALFAGFRTTEWVVGDEESNIDGKLDQADLLVEYLQLCEKYPV 365

Query: 363 PWRMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKD-- 422
           PWRMIR+HVHK+LG+WF+IHPH+RE+ NAQS LTFEFLY++V++LREL ++IPLY+K+  
Sbjct: 366 PWRMIRAHVHKMLGEWFRIHPHVREELNAQSILTFEFLYNIVDKLRELGLRIPLYVKETN 425

[Close]
BLAST of Lsi10G001880 vs. NCBI nr
Match: gi|641860404|gb|KDO79093.1| (hypothetical protein CISIN_1g013813mg [Citrus sinensis])

HSP 1 Score: 656.0 bits (1691), Expect = 4.5e-185
Identity = 315/405 (77.78%), Postives = 357/405 (88.15%), Query Frame = 1 

Query: 22  MASSFTQTLKPDLPQDLDDLLCSDS-------QKQQQEECLSLTKSNDSTLLLGSPSGYL 81
           MA + T+TL  D  QD DDLLCSDS       ++ + EE  SL ++  S+L   SP GYL
Sbjct: 27  MAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPRGYL 86

Query: 82  SGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENE 141
           SGE+R ERAWAHWTKLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFTE+E
Sbjct: 87  SGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFTESE 146

Query: 142 KYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGA 201
           KYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGNYGA
Sbjct: 147 KYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGA 206

Query: 202 FLMDNLPLVKAIVEKLSSNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRD 261
           FLMDNLPLVK++VEKL+ NL VPVSCKIR+FPNLQDTI YA+MLEDAGCSLLAVHGRTRD
Sbjct: 207 FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD 266

Query: 262 EKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVHNCLQETGVEGVLSAEPLLENPA 321
           EKDGKKFRA+W+AI AVKNA+RIPVLANGN+RHMEDV  CL+ETG EGVLSAE LLENPA
Sbjct: 267 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 326

Query: 322 LFAGFRTAEWIEGCEENTRDGDLNQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKI 381
           LFAGFRTAEWI G EE ++DG+L+QADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+WF+I
Sbjct: 327 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRI 386

Query: 382 HPHIREDFNAQSKLTFEFLYSMVERLRELQVKIPLYIKDSHASAI 420
            P +RED NAQ++LTFEFLY++V+RLREL V+IPLY KD+  + I
Sbjct: 387 QPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

The following BLAST results are available for this feature:
BLAST of Lsi10G001880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DUS1L_RAT2.6e-7947.65tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus... [more]
DUS1L_MOUSE4.4e-7947.32tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE... [more]
DUS1L_HUMAN2.2e-7848.26tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE... [more]
DUS1_SCHPO5.3e-6945.87tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (st... [more]
DUS1_YEAST1.4e-6441.53tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (str... [more]
BLAST of Lsi10G001880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTG2_CUCSA5.1e-22893.19Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428390 PE=4 SV=1[more]
A0A067GH93_CITSI3.1e-18577.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1[more]
A0A067KAE0_JATCU5.4e-18575.43Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12444 PE=4 SV=1[more]
V4SQ46_9ROSI2.0e-18477.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025630mg PE=4 SV=1[more]
A0A061DGP6_THECC2.3e-18374.70FMN-linked oxidoreductases superfamily protein OS=Theobroma cacao GN=TCM_000679 ... [more]
BLAST of Lsi10G001880 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67220.11.5e-17573.45 FMN-linked oxidoreductases superfamily protein[more]
AT3G49640.14.0e-3031.98 Aldolase-type TIM barrel family protein[more]
AT4G38890.14.3e-1626.50 FMN-linked oxidoreductases superfamily protein[more]
AT3G63510.17.8e-1027.37 FMN-linked oxidoreductases superfamily protein[more]
BLAST of Lsi10G001880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125738|ref|XP_008462837.1|4.2e-23193.66PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|778673658|ref|XP_011650036.1|7.4e-22893.19PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|568883448|ref|XP_006494482.1|3.1e-18678.02PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|802643850|ref|XP_012079293.1|9.1e-18673.55PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|641860404|gb|KDO79093.1|4.5e-18577.78hypothetical protein CISIN_1g013813mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR018517tRNA_hU_synthase_CS
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0008033 tRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G001880.1Lsi10G001880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001269tRNA-dihydrouridine synthasePANTHERPTHR11082TRNA-DIHYDROURIDINE SYNTHASEcoord: 28..422
score: 3.9E
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 96..386
score: 5.8
IPR013785Aldolase-type TIM barrelGENE3DG3DSA:3.20.20.70coord: 92..324
score: 2.6
IPR018517tRNA-dihydrouridine synthase, conserved sitePROSITEPS01136UPF0034coord: 176..194
scor
NoneNo IPR availablePANTHERPTHR11082:SF5TRNA-DIHYDROURIDINE(16/17) SYNTHASE [NAD(P)(+)]-LIKEcoord: 28..422
score: 3.9E
NoneNo IPR availableunknownSSF51395FMN-linked oxidoreductasescoord: 93..369
score: 1.1