Cp4.1LG16g01540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g01540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptiontRNA-dihydrouridine synthase, putative
LocationCp4.1LG16 : 3573953 .. 3583377 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCTTCGGAAGGGAAATATTTATGTGAAAAACCTTATCCAAATCCGGAAGGATTTCTTCTGCTGCGTAAAACTGAAGGGCAAATATTCGACCAAGCCGGCGGCGGCGATGGGCTACGCAGCCATCGTCATCGTTAGGTTATGAGATCCCCTTCCAATTCTCACCTCCATCTCAAATCTATATTGTCACTCCGTAAGTCATTCATGGCTTCCTCTCGCGCACAAACCGATCTCCCTCAAGACCTCGACGACCTTCTCTGCTCCGATCCACACACACAGCGACAAGATGAATGCTCCTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGGTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGTCCAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCGATGGTTGATAATTCGGAGCTTCCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGTAACATGGAATTCACAACTTGTCAGGTATGTTAAACGTTATAAGTCATTCTTTTGTGTTAACAACTTGAGTTTTCTGTTTTAGGATATAATCTTGTCTGTATTTCTGTAAGTCTATTCTTCATTGTTCTTTAAACTTTGGAATGATTCGTAGGAGGACCGCCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTATGTCGATCTTAATCTCGGGTAATCTCTATTAGTCTAATTCGTATTCGAAGGGTAATTTGTACGAATATTTTCATTCCATATGTTCTTATATTCAAAATGCTGACCTCTTATACTTCTTGTGGGTTGGTGGAGTAAGGATTTGTCTTCCAAAAGAGTTCTTTGAATAAGAAACAATTTCATTGATGGTATGAAATTACGAAAGAAATAGCCTCCTTCTCTGATTAGCGAGCAGGGAAGGAAAACTATACTAATGAAAAAGAGGACGCATTTACACCAAGTTGCAACCAAACTAACTATAGCCTCAAAAAATCTAAGTTATGTGAGTTCCTTATCGTGAAAGATTCTTCTATTACGTTCTTGCCAAATGGTCAGTAAATGCTCCATATTGGTCAGTAATATGTAGGGGAGGTTTGATAGGGTTGCTTATACGAGTGTAAGTCTACCCCCTTGAGATGCGTTTGTTGGTCCAGATTGGTGGACGTTGATGGGGGACGTTCCGAGGGTGAAGCCTATAATGGCACTTATTTATTCAACATGAATAAAAAATTTACTAAAACAACAACCATCCTAATGAAAAGAAAAGGGGGAAAGCTGGTCACCTTGGCGATGACCTCCAGTAGCAAGAATCTCTCCTCTTGCTTCGCTGTTAATGATAATTGGAAAATTAGGAGAGCAGATGAGACCCGTTATCCATTTCCTCCATGTGTGGCTGGAGCTTTTTGCCAATAGGATCTCGTCTAAAAAATCCCAGCCCACCTTGTTCAAAGCTTTCTCAATGCCTAGCTTAAGAACTGCCTCTTTTTTCACTCTCCTTTTCCACCCATCCATAAAATCATTTGCAATAAGGTGGCATCAAGGATTTGTCTACCACCCACAAAAGTCGATTGGTATTCGGTGATAATATGGGGTAGAACCTTCTTGAGAGACTCGGATAGAACTCAAGCAATGATCTTATACATACAAGAAATAAGGCTAGTGGGGTGAAACTAGCCAACAGTTTGGGCATTTGTTTTCTTGGGGATGAGGCATATGTAAGCCTTATTCAAGCTGGCATTGTAATCCCATTCTTGAAAAAATCATGGAACACTGTTCCAAGACTTCTAGAATTCAACTGTAAAACCATCCAGCCTCATTAGCACTCAATTCTTTTACAGAAGACCAAATTTCTTCTTTTGTAAAGGCCATCTCCAATTCCAATGCTTGTTGAGTGGTAATAGGGTCCCAATAAATAGGAGATGGAAAAAACTGGCACCCTTCTTTTTGGTAAAAAAATCCACATAAAATATAAGAAATGCTTCTTCAATCTCCGTTTCAGTGACACTGTAACCATCCTTGGAAAGAATCTTTAAGATACATATATTTTTTTACTTCTTGAGGTCACAATCCAATGAAAGAAGCTTGTGTTGATATCTCCTTCAATCAACTATTTCAATTTACAGCTTTGTCTTCACATGTTTTCTTCTTGGATAGCCAAGGATAAAAGCTAGGTTTTGATAGAAGTCTTCTGAGTGATTTGGATATGATGGATTTCCCCTGTTTCTTCAATGGAGTCCAAAACTAAGAACTCCATGGCAGGATTTCCTTCTAAATTTTGATGCTGCTAGAGGTTTCCTTGTTCCATGTTCTTTAACTGATTTGAGGCTCTCAAGTTTTGAATAAAGTCATGATCTGGCCAACCTCTCAAAAAATGTATTCAGCCACCAATATTCAACCTTAGAAAGAAAGCTTTGATGTTGCGTCCACATATTTTGGAATCTAAAATGAGTATGGCCTCATTTATCCACCCCAAAAGAAAGTTGAACGGGATAATGATTGAAACAATTCTTTCTAGTCTTTTAACCGTAGCAATAGGGAATCTGTTAAGTGGTCGATGACAAGGAATATGTCAATAATCGTGAGAGTGGGAGACTCCCTAAGATCTAATCATGTGGCAGCCCATTTGTCATTGGAATCTCAGTAAGGGCCGCATGCTTTGCCTTGCGGTTCTTCAAGCATTATAATTTTCTTTTGAAGAGCATATTGTTGAAATACCCTCCCAAAAGCCATGATTCAGTGCGTTAAAAGGTCTGGTACCATAATTCCTCAGGCATAAATTCCCCATGAGTCAGTGTTCGATTTCCACAAACTAGTAATCGATGCTTGTTTTGTGAGGGAGAGATGGCAAAGAACAGGATATTTAGTTTGGACATTTAACGACCTAGACCTAGCTTTTTACTGACCTAGAGTCATTGCCATATGCATGACGTAACTTTTTTATGCGGAATGATTCATCTAAAACAACTTCATAAAACAATGTCAGTGACTTAAACGTTTAAGAAAAGGGTCTTATAACAATACAAATGAAATATTCAAAATAAATTAAAATAAACTAAGGAAAATATTAAAATAACAATGCTCTATCCTAACCTAAGATCTATGAAAATAAATGCAACTACCTATGCAAGTTCATTAGTCTTTGGTGCGATGCTGTCATCACCGGTACATGGCTTGAGAAATATTCAGTAAGTGACCCCACTATTAGGAATGCAAACCCATGCAATCAATAATGAGGACCTATCATTTAGAACCATTGTCTCTTAGGTAGCCTCTAGTCCGGACAAACTGAATATGTAGTACTTCCCTACACATGACCCACATGTGCGAATGTGGGCCCACCAGGCGGGCTCACACACCTGCTGGGCCTGCATGGTCGGGCTAGTTGGCTATAGCGGACGAGGTACGACGACGTCGTGTATCATGCCAAGCACGATAGTCATCATCTTCATAGTGTACACGTCCATACTCATCATAAATTGGGAAGTATCTCGATGTAAATGGACATGCAATATGCATGAGGATACTTAATCATCTTAATCATTCATGCGGCACAATCCCCGCACATTCTTTACATATTACCCTAGGTAACATGCATGCATAAGCTTTCATACATTCATCATTCATAACATTACTTGGGAGTTTTGCATCAGAAAATTCTTCATTGTCATACATGTCGTAGCATGTCATATCATAATGCAACATGACTTCTCATACATGCATATCATCGTAACATGAGATATCATCATAATATATCATATCGTCATACATTTCATGTCATTGTAACATATTACATCATCGTCATAATGTTTCATAACATCATAGCATATCACATCATCATAACATTTCATAGCATCATAGCATATCATATCATCATACCACATCATATCAACATACATGACACGTGCAGGGGCCACTGGGCACATGTCATCATACTTAAGACAAGTATTCCGACCGAGTTGATAGTAGGGCCACTTGGTTGGTCTAGGTTGAAACTACACCCCTTGATTCTAGTTTAACGCTGCTCTCTGAAATGTAATTCTACCTAACGAGTCCCACAATAATAAATTAGAATTCTATTGTGTGAATTGTCTCACCTAATCTTGCATAAAATAATTTAAACCAGCTAAACCTAATTTATAATTTAAACTAGCTATACCTAATTTTGCATAAAATAATTTGCTGGAAGGTAGTCAAACTAACTTTAAATGCTTCTAAATAGGAAAGTGTTCGAGCATATCAGACCCAAGCCAGATCAGTCAAAACGTTGGCATGTAGCCGTCAGATAATGTATTCTCCGATTGGCTTCGAACTGTTCAAGTGGGATGAAAGGGAGTTAAGGACCTTCTTTTTATGGTAGAGTCTAACTCCCCACTTTTCAACATAAGCAATGTGGGACAACTTCCTTTTTTTTCTTGGGTTATTAAATCATACACATTTAAAATACTACATCATAACATGTGCGACGTATCCATGCTTCACAAATACTTGGATGACTCGTCTCACGTCGTAGATTACAAGTTCTTATAGATAGACGATAGCCTAAGATACGAGAAAAAGCCAATAAGAATTTTATCTCGGGAAGTGAAGGTCTTCTGTACTAGGAATATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATTTAAACCAGCTAAACCTAATTTATAATTTAAACTTATTCCTAATAATTTAAACTAGTTATACCTAATTTTGCATAAAATAATTTGCTGAAAGGTAGTCAAACTAACTTTAAATGCTTCTAAAGAGTTGAAATTAGTAGGAAAGTGTCCGAGCATATCAGACCCAAGCTAGATCAGTCAAAACATTGGCATGTAGCCGTCAGATAATGTATTCTCCGATTGGCTTCGAACTGTTCAAGTGGGATGAAAGGGAGTTAAGGACCTTCTTTTTATGGTAGAGTCTAACTCCCCACTTTTCAACATAAGCAATGTGGGACAACTTCCTTTTTTTTCTTGGGTTATTAAATCATACACATTTAAAATACTACATCATAACATGTGCGACGTATCCATGCTTCACAAATACTTGGATGACTCGTCTCACGTCGTAGATTACAAGTTCTTATAGATAGACGATAGCCTAAGATACGAGAAAAAGCCAATAAGAATTTTATCTCGGGAAGTGAAGGTCTTCTGTACTAGGAATATGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTCACATTGCTCATGTTTAAAAGTTGGGGAGTTAGGTGAAGGTCCCTTACTTCCTTTCATCCCACTTGAACGATTCGAAGTCAGTCGGAGAATATATTTTTTGACGGCTTCAAGCTAACATTTTGGCTGATCTGGCTTGGGTCTGATGCGCTCAGACCCTTTCCTACTAGTTTCAACTCTTCGGAAGTGTTTAAGGTTAGTATGACTATCTTTTAGTTAGTTTAAATTTTTGGAGTCAAGTTTAAATTATTTTATGCAAAATTTGGTTTAGCTAGTCTCAATTATTAATTAGGTTTAGCTAGTTTAAATTACTAAGAGTATGTTTAAATTGTTTCATGCAAAATTAGGTGAGCCAATTCTCATCTTAAAATTCTATTTTAGGATTGTAAGAATCCTTAGGTAGAATTACATTTTAGAGAGTAGAATCCTTCGGTAGAATTACATTTTAGAGAACAAAATCCTTAGGTAGAATTACATTTTAGAGAGAAGAATCTTTAGATAGAATTACATTTTAGAAAGCAGAATCCTCCAGTAGAATTACATTTTAGAGAGCAAAATCCTAGGCCAACCAAGTAAGTGGCCCTGCTATCAGTTCGGTCGGAAGACTTGTGTTGTGTATGATGACACGTGCCTAGTGGCTCATGCACATGTCATATATGTTGATATGTTATGATGATTTGAAGTGTTATGATATGTTATGATGATGATGTAACACTATGATGACATGAGATGTATGAGGATATGACATAGTATGATGATATCTCATATTACGATGATATGCATGTATAAGATGTCATGTTGCACTATGATATGACATGTCTGGCAATGAAGAGTTTTCTAATGCAACCCTTGAGTAATGTTATGAAGCTTATACATGCAAGTTTCCTAGTGAGTAATGTTATGAAGCTTATACATGCAAGTTTCCTAGGGTAATATGTGAGGTTATGCTGCATGAATGATTAAGATGAAAAGTATAAGGACTTCATGCATATTGTATGTCTATTTACATCGGGATACTTCTCCTTTTATGATAAGTACAAACACATATACTATGATGATGACGACTATAATACTTGGCATGATACATGTTGTCGTACTTCTGGACGTTCGGTTACGACTATATATCCCGACCATGCAGGCCCAGGGGGTGTGCGAGCCCACCTGGTGGGCCCACGTTCGCATATGTGAGTCGTGTGTAAAGAAGTACTACACATCCAATTTATTCGGACTGGAGGCTACTTAAGAGACTATAGTTTTAAATGATAGGTCTCTATTCATTAGTATTTTAAGAAATACTCAAGTCATGTGCTATTATTATATTTCAGGTAAATGCAAAGGCGCACCAAAAACCATGAAACTTGCATAGGGTAGTTGCATTTATTTTCGTAGATCTTAGATTCGTACAGGGCATTGTTATTTTTATATTTTCCATGGCTTATTTTAATTTACTTTGAATATTTTCTTTGTATTGTTTTAAAACCATTTTCTTAAACGTATAAGTCTATGACATTGTTTTATAAATTTGTTTTAAATGAATATTTCTGTATATAGAAGTTACGTCATGCATATGGTAACGACTCTAAGTCCCTAGAAAACTAGTGTCGTTACATTTTCAATAGACTTCGGTAGACCTCTTGAGGAGAAATAATGATTTCCTACCCGTTTTTTAGTTGAAATGAGTAGTTCCATATTTTGGAGCAATAACTCTTCTCCAAAGGGCCTCCTTCTCATGATAAGAACGCCAAATCCACTTTGCTAGGAGGTAGATGTTTTTCCTTATGAAGATCATATATCCTCAGGCCTCCTTCAATAGGCTTTTCTAAAGATCATTTAACAATACCTTTCTTGTCAGTATTGTGTTTCTCAGAAATATTAACGGCTATATTTGGGCTATTTTGAAACGACGATGGTTCAGAGATAGTTAAGGAGAGAGAAGGCAGAACAGATTGGGTAATGTTTGGTTTGTGGGGCTTTTGGTTTGGTTTAGACTTATACGTTTAGTTTAAAACAAGAAATAGAAATAACGTCGGTCAAAATAAAACCTTAACATAATGTTTGAGTACGAAAATGAAAAACCACCTATAAAACTACAAACGGAAAACGTTGCATACTACTATCGTATCTTAGCTTCCATGGCCATTCCAACATTCCCCCTTATCCATGTAGAGGCGCTTTACCTTTACTTGAAATGTAATATCTTAGCTTCCATGACCATTCCAACATTCCCCCTTATCCTTATCCATGCAGAGGCGTTTTACCTCTACCTGAAATGTAAGAGTAGCGCATGGCTGGAGTATTTTAAGAAACGTTTTAGTAAGTAACCTCATTGTTGTGGTTGGGTAATGCAAGCGCACACATACATGATAAGACCTATCTCTTAAAACAACATAGCATGACCTTAAACTCTTTTCAATTTCGGGCAGGGTTGGATGTATGGTACTTCCCCACACATGGCCCGACATTGCCCGGAATTAGAAAGAGTTCAAGGCCATGCTATATTGTTTTAAAGGATAGGTCCCATCATGTATGTGTGTGTGCTAGACCCAACCCCAACAATTGGGTTACTTAGTATTTATTAAAATATTCAAACTATGTGTTACTCTTACATCTCAGTAAAGCGTCCCCTTCCTGTTAGTATTTATTCTTTTTATTTATTTTCTGCATTGTTCTCCATTTCAGTTGCGTTTTTAACTAAAAAAACAATCAAGAACAATCGTAGTTCACGTGCTTTCCATATGTGTCGCTTCCAAATATGTTGATGGTATCCATATTTTTCACTTACGGTTTCTGAACTTCATTTGAGTGCTCTATTAATTTCATGCAGTTGTCCTCAGCGTATTGCAAGGCGAGGAAACTATGGGGCTTTTTTGATGGACAACTTACCTCTTGTAAAAGCAATAGTAGAGAAAGTGGCTTCCAATCTTCAGGTTCCTGTATCATGCAAAATCCGAGTCTTCCCAAATTTACAGGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGCAAAAAATTCCGAGCTAATTGGAGCGCCATTAGTGCTGTTAAAAACGCTCTACGAATCCCGGTACTTGCCAATGGGAACATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGAGTCGAGGGCGTGCTTTCAGCCGAAACCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACCGCGCAATGGACAGCGGGCTGTGAAGAAAGTAGCAGGGATGGAAACCTGGATCAAGCTGATCTACTGGTGGACTACTTGAAGCTTTGTGAAAAATATCCTGTCCCGTGGCGAATGATCCGTTCACACGTACACAAGTTGTTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGATTTCAATGCACAATCCAAGCTCACCTTTGAATTTCTTTACAACATGGTGGAGCGGCTGAGAGAGTTGCAGGTAAAAATTCCTCTTTATATTAAGGATTCTCCTGCATCTGCTATTTCATCCATTGGTTGACTGCTTCACTGATCATTGATTGATAGGCTTACTGGTCTTAACTTAAAAATTCTTTGCCAAAATTAGATTCATTCTGTTGTTGTACCATTGATATTCACATAAAACTGTTCTTCAATCAGCTTGGACACAGCGATGAAAGAAAAGATTTTGCATATTGTGAATTGTAGCCTGAATTTATTTGATTAGGGAAGAGACAGAGAGTTAACGTTACCTTTTGGCTTTGAATTGTGAGTAGTGATTTTAACTATGCAAAATGCATGTCAACTCAAAGTCACCCACTTATTTCATCTTATTGTTTGAACATTGTTTCGTTGCCATGATAGCTTGATTTGATACGAGACTCGTT

mRNA sequence

TATCTTCGGAAGGGAAATATTTATGTGAAAAACCTTATCCAAATCCGGAAGGATTTCTTCTGCTGCGTAAAACTGAAGGGCAAATATTCGACCAAGCCGGCGGCGGCGATGGGCTACGCAGCCATCGTCATCGTTAGATCCCCTTCCAATTCTCACCTCCATCTCAAATCTATATTGTCACTCCGTAAGTCATTCATGGCTTCCTCTCGCGCACAAACCGATCTCCCTCAAGACCTCGACGACCTTCTCTGCTCCGATCCACACACACAGCGACAAGATGAATGCTCCTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGGTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGTCCAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCGATGGTTGATAATTCGGAGCTTCCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGTAACATGGAATTCACAACTTGTCAGGAGGACCGCCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTATGTCGATCTTAATCTCGGTTGTCCTCAGCGTATTGCAAGGCGAGGAAACTATGGGGCTTTTTTGATGGACAACTTACCTCTTGTAAAAGCAATAGTAGAGAAAGTGGCTTCCAATCTTCAGGTTCCTGTATCATGCAAAATCCGAGTCTTCCCAAATTTACAGGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGCAAAAAATTCCGAGCTAATTGGAGCGCCATTAGTGCTGTTAAAAACGCTCTACGAATCCCGGTACTTGCCAATGGGAACATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGAGTCGAGGGCGTGCTTTCAGCCGAAACCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACCGCGCAATGGACAGCGGGCTGTGAAGAAAGTAGCAGGGATGGAAACCTGGATCAAGCTGATCTACTGGTGGACTACTTGAAGCTTTGTGAAAAATATCCTGTCCCGTGGCGAATGATCCGTTCACACGTACACAAGTTGTTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGATTTCAATGCACAATCCAAGCTCACCTTTGAATTTCTTTACAACATGGTGGAGCGGCTGAGAGAGTTGCAGGTAAAAATTCCTCTTTATATTAAGGATTCTCCTGCATCTGCTATTTCATCCATTGGTTGACTGCTTCACTGATCATTGATTGATAGGCTTACTGGTCTTAACTTAAAAATTCTTTGCCAAAATTAGATTCATTCTGTTGTTGTACCATTGATATTCACATAAAACTGTTCTTCAATCAGCTTGGACACAGCGATGAAAGAAAAGATTTTGCATATTGTGAATTGTAGCCTGAATTTATTTGATTAGGGAAGAGACAGAGAGTTAACGTTACCTTTTGGCTTTGAATTGTGAGTAGTGATTTTAACTATGCAAAATGCATGTCAACTCAAAGTCACCCACTTATTTCATCTTATTGTTTGAACATTGTTTCGTTGCCATGATAGCTTGATTTGATACGAGACTCGTT

Coding sequence (CDS)

TATCTTCGGAAGGGAAATATTTATGTGAAAAACCTTATCCAAATCCGGAAGGATTTCTTCTGCTGCGTAAAACTGAAGGGCAAATATTCGACCAAGCCGGCGGCGGCGATGGGCTACGCAGCCATCGTCATCGTTAGATCCCCTTCCAATTCTCACCTCCATCTCAAATCTATATTGTCACTCCGTAAGTCATTCATGGCTTCCTCTCGCGCACAAACCGATCTCCCTCAAGACCTCGACGACCTTCTCTGCTCCGATCCACACACACAGCGACAAGATGAATGCTCCTCTCTTACCAAATCCAATGACTCAACACTTCTCTTGGGGTCGCCGAGTGGATATTTGAGTGGCGAGTCGCGCATTGAGCGAGCCTGGGCTCACTGGTCCAAGCTCGGTCGGCCGAAGTTGATTGTAGCTCCGATGGTTGATAATTCGGAGCTTCCGTTCCGTTTGCTCTGCAGGAAATATGGTGCCGAGGCGGCGTATACACCTATGCTGCATTCACGGATCTTTACTGAGAACGAGAAGTATCGTAACATGGAATTCACAACTTGTCAGGAGGACCGCCCATTATTTGTTCAATTTTGTGCCAATGATCCCGATGTTTTGTTGGAAGCTGCTAGAAGAGTGGAGCCATATTGTGATTATGTCGATCTTAATCTCGGTTGTCCTCAGCGTATTGCAAGGCGAGGAAACTATGGGGCTTTTTTGATGGACAACTTACCTCTTGTAAAAGCAATAGTAGAGAAAGTGGCTTCCAATCTTCAGGTTCCTGTATCATGCAAAATCCGAGTCTTCCCAAATTTACAGGATACAATTAATTATGCAAGAATGTTAGAGGATGCTGGTTGCTCTCTTTTAGCTGTCCATGGCCGCACAAGAGATGAAAAAGATGGCAAAAAATTCCGAGCTAATTGGAGCGCCATTAGTGCTGTTAAAAACGCTCTACGAATCCCGGTACTTGCCAATGGGAACATAAGGCACATGGAAGATGTTCACAACTGTTTGCAAGAGACTGGAGTCGAGGGCGTGCTTTCAGCCGAAACCCTTCTGGAGAATCCTGCACTTTTTGCTGGGTTTCGAACCGCGCAATGGACAGCGGGCTGTGAAGAAAGTAGCAGGGATGGAAACCTGGATCAAGCTGATCTACTGGTGGACTACTTGAAGCTTTGTGAAAAATATCCTGTCCCGTGGCGAATGATCCGTTCACACGTACACAAGTTGTTGGGAGATTGGTTCAAGATTCATCCACACATTAGAGAAGATTTCAATGCACAATCCAAGCTCACCTTTGAATTTCTTTACAACATGGTGGAGCGGCTGAGAGAGTTGCAGGTAAAAATTCCTCTTTATATTAAGGATTCTCCTGCATCTGCTATTTCATCCATTGGTTGA

Protein sequence

YLRKGNIYVKNLIQIRKDFFCCVKLKGKYSTKPAAAMGYAAIVIVRSPSNSHLHLKSILSLRKSFMASSRAQTDLPQDLDDLLCSDPHTQRQDECSSLTKSNDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAISSIG
Homology
[Close]
BLAST of Cp4.1LG16g01540 vs. Swiss-Prot
Match: DUS1L_RAT (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 4.8e-79
Identity = 143/298 (47.99%), Postives = 194/298 (65.10%), Query Frame = 1 

Query: 128 WSK-LGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 187
           WS+ LG  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69

Query: 188 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 247
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG YGAFL +   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLL 129

Query: 248 KAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 307
           + ++      L VPV+CKIRVFP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189

Query: 308 NWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRTAQ 367
           +W  I AV+ A+ IPV ANGNIR ++DV  C+Q+TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 368 WTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 423
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREE 291

[Close]
BLAST of Cp4.1LG16g01540 vs. Swiss-Prot
Match: DUS1L_MOUSE (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 8.1e-79
Identity = 142/298 (47.65%), Postives = 195/298 (65.44%), Query Frame = 1 

Query: 128 WSK-LGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 187
           WS+ LG  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69

Query: 188 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 247
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG+YGAFL +   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLL 129

Query: 248 KAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 307
           + ++      L VPV+CKIRVFP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTA 189

Query: 308 NWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRTAQ 367
           +W  I AV+ A+ IPV ANGNI+ ++DV  C+Q+TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 368 WTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 423
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREE 291

[Close]
BLAST of Cp4.1LG16g01540 vs. Swiss-Prot
Match: DUS1L_HUMAN (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.1e-78
Identity = 142/298 (47.65%), Postives = 194/298 (65.10%), Query Frame = 1 

Query: 128 WSKLGR-PKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYR--NMEFTT 187
           WS+  R  + +VAPMVD SEL +RLL R++GA+  YTPMLH+++F  +  YR  N+    
Sbjct: 10  WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69

Query: 188 CQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 247
           C EDRPL VQFCANDP+V ++AA   + YCD +DLNLGCPQ IA+RG+YGAFL D   L+
Sbjct: 70  CPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLL 129

Query: 248 KAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 307
           + ++      L VPV+CKIRVFP +  T+ YA+MLE AGC LL VHGRT+++K      A
Sbjct: 130 QRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAA 189

Query: 308 NWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRTAQ 367
           +W  I AV+ A+ IPV ANGNI+ ++DV  CL++TGV+GV+SAE  L NPALF G   A 
Sbjct: 190 SWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAV 249

Query: 368 WTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIRED 423
           W                +L  +YL +  ++P P   +R+H+ KL     ++H  +RE+
Sbjct: 250 W----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREE 291

[Close]
BLAST of Cp4.1LG16g01540 vs. Swiss-Prot
Match: DUS1_SCHPO (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.8e-69
Identity = 132/302 (43.71%), Postives = 194/302 (64.24%), Query Frame = 1 

Query: 128 WSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTT--C 187
           ++K+GRPK I+APMVD SELP+R+L R+ GA+  Y+PM HSR+F E+E YRN  F+T   
Sbjct: 12  YNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTI 71

Query: 188 QEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVK 247
            E+RPL +QFC NDP+++L+AA+   PYCD VD+NLGCPQ IA++G YG+FL +N  L++
Sbjct: 72  PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131

Query: 248 AIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRAN 307
           +I+ K+ + L +PV+ KIR+FP+ Q T++YA+M+  AG S+LAVHGR R++K      A+
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191

Query: 308 WSAISAVKNAL--RIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRTA 367
           W  I  ++  L     + ANGNI H +D+  C++ TGV+GVLSAE  L NP +F    + 
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPPSSP 251

Query: 368 QWTAGCEESSRDGNLDQADLLVDYLKLCEKYPV-----PWRMIRSHVHKLLGDWFKIHPH 421
             T           +D  D+  +YL +  ++ +         I+ H+ KL+     IH  
Sbjct: 252 LMTL-------YPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 304

[Close]
BLAST of Cp4.1LG16g01540 vs. Swiss-Prot
Match: DUS1_YEAST (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.9e-64
Identity = 129/315 (40.95%), Postives = 190/315 (60.32%), Query Frame = 1 

Query: 128 WSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQE 187
           + K+GRP  IVAPMVD SEL +R+L R+YGA  AYTPMLH+++F  ++KYR   +++   
Sbjct: 23  FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82

Query: 188 ---DRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLV 247
              DRPL VQFCANDP+ LL AA+ VE  CD VDLNLGCPQ IA++G+YG+FLM+   L+
Sbjct: 83  SSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLI 142

Query: 248 KAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRA 307
             ++  +  NL+VPV+ KIR+F + + ++NYA+M+ DAG   L VHGR R++K  K   A
Sbjct: 143 HNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLA 202

Query: 308 NWSAISAVKNAL--RIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRT 367
           NW  I  +++ L       ANGNI + ED+  C++  G + V+SAE  L NP +F   +T
Sbjct: 203 NWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQT 262

Query: 368 AQWTAGCEESSRDGNLDQADLLV----DYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPH 427
                     +++    + D ++      +K C++       ++SH  K+L  +   H  
Sbjct: 263 ---------KNKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTD 322

Query: 428 IREDF-NAQSKLTFE 433
           IR       +K T+E
Sbjct: 323 IRSTLATMNAKATWE 328

[Close]
BLAST of Cp4.1LG16g01540 vs. TrEMBL
Match: A0A0A0LTG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428390 PE=4 SV=1)

HSP 1 Score: 769.6 bits (1986), Expect = 2.1e-219
Identity = 384/424 (90.57%), Postives = 396/424 (93.40%), Query Frame = 1 

Query: 45  VRSPSNSHLHLKSILSLRKSFMASSRAQT---DL-PQDLDDLLCSDPHTQRQDECSSLTK 104
           +RS SNSHLHLK I SL  S MASS  QT   DL PQDLDDLLCS  H Q Q E SSLT 
Sbjct: 1   MRSLSNSHLHLKYIFSLPNSLMASSLIQTLKPDLAPQDLDDLLCSPSHKQPQHESSSLTN 60

Query: 105 S--NDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGA 164
           S  NDST LLGSP+GYLS ESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  STSNDSTPLLGSPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 165 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 224
           EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 225 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARM 284
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEK+ASNLQVPVSCKIR+FPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 285 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQE 344
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDV++CLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQE 300

Query: 345 TGVEGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPW 404
           TGVEGVLSAETLLENPALFAGFRTA+W  G EE++RDGNLDQADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 405 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPAS 463
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVK+PLYIKDS A 
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHAL 420

[Close]
BLAST of Cp4.1LG16g01540 vs. TrEMBL
Match: A0A067GH93_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1)

HSP 1 Score: 655.6 bits (1690), Expect = 4.5e-185
Identity = 319/408 (78.19%), Postives = 357/408 (87.50%), Query Frame = 1 

Query: 63  KSFMASSRAQT---DLPQDLDDLLCSDP--HTQRQD-----ECSSLTKSNDSTLLLGSPS 122
           K  MA +R +T   D  QD DDLLCSD   H  +Q+     E SSL ++  S+L   SP 
Sbjct: 24  KPTMAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPR 83

Query: 123 GYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFT 182
           GYLSGE+R ERAWAHW+KLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFT
Sbjct: 84  GYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT 143

Query: 183 ENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGN 242
           E+EKYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGN
Sbjct: 144 ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGN 203

Query: 243 YGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGR 302
           YGAFLMDNLPLVK++VEK+A NL VPVSCKIRVFPNLQDTI YA+MLEDAGCSLLAVHGR
Sbjct: 204 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 263

Query: 303 TRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLE 362
           TRDEKDGKKFRA+W+AI AVKNALRIPVLANGN+RHMEDV  CL+ETG EGVLSAE+LLE
Sbjct: 264 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 323

Query: 363 NPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDW 422
           NPALFAGFRTA+W  G EE S+DGNLDQADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+W
Sbjct: 324 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW 383

Query: 423 FKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAI 461
           F+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 384 FRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Cp4.1LG16g01540 vs. TrEMBL
Match: V4SQ46_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025630mg PE=4 SV=1)

HSP 1 Score: 652.9 bits (1683), Expect = 2.9e-184
Identity = 318/408 (77.94%), Postives = 356/408 (87.25%), Query Frame = 1 

Query: 63  KSFMASSRAQT---DLPQDLDDLLCSDP--HTQRQD-----ECSSLTKSNDSTLLLGSPS 122
           K  MA +R +T   D  QD DDLLCSD   H  +Q+     E SSL ++  S+L   SP 
Sbjct: 24  KPTMAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPR 83

Query: 123 GYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFT 182
           GYLSGE+R ERAWAHW+KLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFT
Sbjct: 84  GYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT 143

Query: 183 ENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGN 242
           E+EKYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGN
Sbjct: 144 ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGN 203

Query: 243 YGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGR 302
           YGAFLMDNLPLVK++VEK+A NL VPVSCKIRVFPNLQDTI YA+MLEDAGCSLLAVHGR
Sbjct: 204 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 263

Query: 303 TRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLE 362
           TRDEKDGKKFRA+W+AI AVKNALRIPVLANGN+RHMEDV  CL+ETG EGVLSAE+LLE
Sbjct: 264 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 323

Query: 363 NPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDW 422
           NPALFAGFRTA+W  G EE S+DGNLDQADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+W
Sbjct: 324 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW 383

Query: 423 FKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAI 461
           F+I P +R D NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 384 FRIQPGVRGDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Cp4.1LG16g01540 vs. TrEMBL
Match: A0A067KAE0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12444 PE=4 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 2.1e-182
Identity = 306/399 (76.69%), Postives = 349/399 (87.47%), Query Frame = 1 

Query: 66  MASSRAQT---DLPQDLDDLLCSDPHTQRQD------ECSSLTKSNDSTLLLGSPSGYLS 125
           MASS       D PQDLDDLLCS+P  Q+Q+        SS      S+  L     YL+
Sbjct: 1   MASSLTHALAQDPPQDLDDLLCSNPQQQQQEIQQTEEHTSSSFPDTASSCCLDPVGRYLN 60

Query: 126 GESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEK 185
           GESR+ERAWAHW+KLGRPKLIVAPMVDNSELPFR+LCRKYGAEAAYTPMLHSRIFTENEK
Sbjct: 61  GESRVERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEK 120

Query: 186 YRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAF 245
           YR+ EFTTC+EDRPLFVQFCANDP++LLEAARRVEPYCDYVD+NLGCPQRIARRGNYGAF
Sbjct: 121 YRDQEFTTCKEDRPLFVQFCANDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAF 180

Query: 246 LMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDE 305
           LMD LPLVK++VEK+  NL VPVSCKIRVFP L+DTINYARMLE+AGCSLLAVHGRTRDE
Sbjct: 181 LMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGRTRDE 240

Query: 306 KDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPAL 365
           KDGKKFRA+W AI AVK+ALRIPVLANGNIRHM+DV +CL+ETG +GVLSAE+LLENPAL
Sbjct: 241 KDGKKFRADWKAIKAVKDALRIPVLANGNIRHMDDVQSCLEETGADGVLSAESLLENPAL 300

Query: 366 FAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIH 425
           FAGFRT +W  G EES+ DG LDQADLLV+YL+LCEKYPVPWRMIR+HVHK+LG+WF+IH
Sbjct: 301 FAGFRTTEWVVGDEESNIDGKLDQADLLVEYLQLCEKYPVPWRMIRAHVHKMLGEWFRIH 360

Query: 426 PHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDS 456
           PH+RE+ NAQS LTFEFLYN+V++LREL ++IPLY+K++
Sbjct: 361 PHVREELNAQSILTFEFLYNIVDKLRELGLRIPLYVKET 399

[Close]
BLAST of Cp4.1LG16g01540 vs. TrEMBL
Match: A0A061DGP6_THECC (FMN-linked oxidoreductases superfamily protein OS=Theobroma cacao GN=TCM_000679 PE=4 SV=1)

HSP 1 Score: 646.4 bits (1666), Expect = 2.7e-182
Identity = 305/395 (77.22%), Postives = 349/395 (88.35%), Query Frame = 1 

Query: 68  SSRAQTDLPQDLDDLLCSDPHTQRQDECSSLTKSNDSTLLLGSPSGYLSGESRIERAWAH 127
           S   Q D   D D LLCS+P   ++++ SS  + +D+   +GSP  YLS ESR+ERAWAH
Sbjct: 37  SDPPQNDNSNDDDALLCSNPQQNQEEQSSS--QVDDTPSSIGSPGRYLSWESRVERAWAH 96

Query: 128 WSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQE 187
           W+KLGRPKLIVAPMVDNSELPFR+LCRK+GAEAAYTPMLHSRIFTENEKYRN EFTTC+E
Sbjct: 97  WAKLGRPKLIVAPMVDNSELPFRMLCRKFGAEAAYTPMLHSRIFTENEKYRNEEFTTCKE 156

Query: 188 DRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAI 247
           DRPLFVQFCANDPDVLLEAARRVEPYCDYVD+NLGCPQRIARRG YGAFLMDNLPLVK++
Sbjct: 157 DRPLFVQFCANDPDVLLEAARRVEPYCDYVDINLGCPQRIARRGYYGAFLMDNLPLVKSL 216

Query: 248 VEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWS 307
           VEK+A NL VPVSCKIRVFPNLQDTI YA+MLEDAGCSLLAVHGRTRDEKDGK+FRA+W+
Sbjct: 217 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKRFRADWN 276

Query: 308 AISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFAGFRTAQWTA 367
           AI AVKNAL IPVLANGNIRHMEDV NCL+ETG +GVLSAE+LLENPALFAGFRTA W  
Sbjct: 277 AIKAVKNALGIPVLANGNIRHMEDVQNCLEETGADGVLSAESLLENPALFAGFRTADWVG 336

Query: 368 GCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDWFKIHPHIREDFNAQS 427
             E+ + +G LDQA+LLV+YLK+CE+YPVPWRMIRSHVHK+LGDWF+I PH+RED N+QS
Sbjct: 337 NNEKDNIEGKLDQAELLVEYLKICERYPVPWRMIRSHVHKMLGDWFRIQPHVREDLNSQS 396

Query: 428 KLTFEFLYNMVERLRELQVKIPLYIKDSPASAISS 463
           +LTFEFLYN+V++LREL V+IPLY KD+ A+  S+
Sbjct: 397 RLTFEFLYNLVDQLRELGVRIPLYQKDTSAAGSSA 429

[Close]
BLAST of Cp4.1LG16g01540 vs. TAIR10
Match: AT5G67220.1 (AT5G67220.1 FMN-linked oxidoreductases superfamily protein)

HSP 1 Score: 612.1 bits (1577), Expect = 2.9e-175
Identity = 294/403 (72.95%), Postives = 338/403 (83.87%), Query Frame = 1 

Query: 59  LSLRKSFMASSRAQTDLP-------QDLDDLLCSDPHTQRQDECSSLTKSNDSTLLLGSP 118
           L  RKS ++ +RA T  P       Q LDD+LCS+    + +E      ++     LGSP
Sbjct: 11  LRTRKSLISQTRAMTQNPDPKPDPSQVLDDILCSEQRDGQIEETVDTAPAS-----LGSP 70

Query: 119 SGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIF 178
           S  LS ++R+ERAWAHW KLGRPK IVAPMVDNSELPFRLLC+KYGA+AAYTPMLHSRIF
Sbjct: 71  SRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIF 130

Query: 179 TENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRG 238
           TE EKYRN EFTTC+EDRPLFVQFCANDPD LLEAA+RVEPYCDYVD+NLGCPQRIARRG
Sbjct: 131 TETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRG 190

Query: 239 NYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHG 298
           NYGAFLMDNLPLVK++VEK+A NL VPVSCKIR+FPNL+DT+ YA+MLEDAGCSLLAVHG
Sbjct: 191 NYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHG 250

Query: 299 RTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLL 358
           RTRDEKDGKKFRA+WSAI  VKNA+RIPVLANGN+R +EDV NC++ETGVEGVLSAETLL
Sbjct: 251 RTRDEKDGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLL 310

Query: 359 ENPALFAGFRTAQWTAGCEESS-RDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLG 418
           ENPA FAGFRTA+W    EE    DG LDQ DL+V+YLKLCEK+PVPWRMIRSHVHK+LG
Sbjct: 311 ENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLG 370

Query: 419 DWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIK 454
           +WF+IHP +RE  NAQ+ LTFEFLY +V++LREL  ++PLY K
Sbjct: 371 EWFRIHPQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408

[Close]
BLAST of Cp4.1LG16g01540 vs. TAIR10
Match: AT3G49640.1 (AT3G49640.1 Aldolase-type TIM barrel family protein)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-29
Identity = 79/247 (31.98%), Postives = 121/247 (48.99%), Query Frame = 1 

Query: 135 KLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNME------------- 194
           KL++APMV    L FR+L  +YGA+  Y   +      + E+  N+              
Sbjct: 6   KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 65

Query: 195 --FTTCQEDRPLFV-QFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLM 254
             F+TC E++   V Q   +D    L+A+  V      +D+N+GCP+  + +G  GA L+
Sbjct: 66  VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 125

Query: 255 DNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKD 314
               L+  I+  +  NL VPV+CKIR+  +  DT+  AR +E  G   LAVHG  R   D
Sbjct: 126 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHG--RKIAD 185

Query: 315 GKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLENPALFA 366
             +  A W  I+ V  AL IPV+ANG++   +D       TG   V+ A   + N ++F+
Sbjct: 186 RPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 245

[Close]
BLAST of Cp4.1LG16g01540 vs. TAIR10
Match: AT4G38890.1 (AT4G38890.1 FMN-linked oxidoreductases superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 52/200 (26.00%), Postives = 93/200 (46.50%), Query Frame = 1 

Query: 133 RPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLF 192
           R KL +AP+     LPFR LC+  GA+     M       + +            +    
Sbjct: 337 RDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 396

Query: 193 VQFCANDPDVLLEAARRVEPYC--DYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVEK 252
           VQ C + PD +      ++  C  D++D+N+GCP  +    + G+ L++    +K IVE 
Sbjct: 397 VQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIVEV 456

Query: 253 VASNLQVPVSCKIRV--FPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSA 312
            +S ++ P++ K+R   F       +    + + G + + +HGR+R ++  K   A+W  
Sbjct: 457 SSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKS--ADWDY 516

Query: 313 I-SAVKNA-LRIPVLANGNI 327
           I    KNA   + V+ NG++
Sbjct: 517 IYQCTKNATTNLQVIGNGDV 534

[Close]
BLAST of Cp4.1LG16g01540 vs. TAIR10
Match: AT3G63510.1 (AT3G63510.1 FMN-linked oxidoreductases superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-10
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = 1 

Query: 134 PKLIVAPMVDNSELPFRLLCRKYGAEA-AYTPMLHSRIFTENEKYRNMEFTTCQEDRPLF 193
           P   VAPM+D ++  +R L R     A  YT M+ +      +   +       +  P+ 
Sbjct: 52  PSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIV 111

Query: 194 VQFCANDPDVLLEAARRVEPY-CDYVDLNLGCPQ-RIARRGNYGAFLMDNLPLVKAIVEK 253
           +Q   ++ + L +AA+  + Y  D ++LN GCP  ++A  G +G  LM    LV   +  
Sbjct: 112 LQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSA 171

Query: 254 VASNLQVPVSCKIRV 266
           +A+N  VPV+ K R+
Sbjct: 172 IAANTNVPVTVKCRI 186

[Close]
BLAST of Cp4.1LG16g01540 vs. NCBI nr
Match: gi|659125738|ref|XP_008462837.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 781.9 bits (2018), Expect = 6.0e-223
Identity = 387/424 (91.27%), Postives = 401/424 (94.58%), Query Frame = 1 

Query: 45  VRSPSNSHLHLKSILSLRKSFMASSRAQT---DLP-QDLDDLLCSDPHTQRQDECSSLT- 104
           +RS SNSHL+LK+I SLR SFMASS  QT   DLP QDLDDLLCS P  QRQDE SSLT 
Sbjct: 1   MRSLSNSHLYLKTIFSLRNSFMASSFTQTLKPDLPPQDLDDLLCSHPQKQRQDESSSLTG 60

Query: 105 -KSNDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGA 164
             SNDS LLLGSP+GYLSGESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  SNSNDSKLLLGSPTGYLSGESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 165 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 224
           +AAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 DAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 225 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARM 284
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEK+ASNLQVPVSCKIR+FPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 285 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQE 344
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDV+NCLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNNCLQE 300

Query: 345 TGVEGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPW 404
           TGVEGVLSAETLLENPALFAGFRTA+W  G EE++RDGNLDQADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGQEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 405 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPAS 463
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVK+PLYIKDS   
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHVP 420

[Close]
BLAST of Cp4.1LG16g01540 vs. NCBI nr
Match: gi|778673658|ref|XP_011650036.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 769.6 bits (1986), Expect = 3.1e-219
Identity = 384/424 (90.57%), Postives = 396/424 (93.40%), Query Frame = 1 

Query: 45  VRSPSNSHLHLKSILSLRKSFMASSRAQT---DL-PQDLDDLLCSDPHTQRQDECSSLTK 104
           +RS SNSHLHLK I SL  S MASS  QT   DL PQDLDDLLCS  H Q Q E SSLT 
Sbjct: 1   MRSLSNSHLHLKYIFSLPNSLMASSLIQTLKPDLAPQDLDDLLCSPSHKQPQHESSSLTN 60

Query: 105 S--NDSTLLLGSPSGYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGA 164
           S  NDST LLGSP+GYLS ESRIERAWAHW+KLGRPKLIVAPMVDNSELPFRLLCRKYGA
Sbjct: 61  STSNDSTPLLGSPTGYLSRESRIERAWAHWTKLGRPKLIVAPMVDNSELPFRLLCRKYGA 120

Query: 165 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 224
           EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD
Sbjct: 121 EAAYTPMLHSRIFTENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVD 180

Query: 225 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARM 284
           LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEK+ASNLQVPVSCKIR+FPNLQDTINYARM
Sbjct: 181 LNLGCPQRIARRGNYGAFLMDNLPLVKAIVEKLASNLQVPVSCKIRIFPNLQDTINYARM 240

Query: 285 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQE 344
           LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNA+RIPVLANGNIRHMEDV++CLQE
Sbjct: 241 LEDAGCSLLAVHGRTRDEKDGKKFRANWSAISAVKNAVRIPVLANGNIRHMEDVNDCLQE 300

Query: 345 TGVEGVLSAETLLENPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPW 404
           TGVEGVLSAETLLENPALFAGFRTA+W  G EE++RDGNLDQADLLVDYLKLCEKYPVPW
Sbjct: 301 TGVEGVLSAETLLENPALFAGFRTAEWIEGHEENTRDGNLDQADLLVDYLKLCEKYPVPW 360

Query: 405 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPAS 463
           RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVK+PLYIKDS A 
Sbjct: 361 RMIRSHVHKLLGDWFKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKMPLYIKDSHAL 420

[Close]
BLAST of Cp4.1LG16g01540 vs. NCBI nr
Match: gi|568883448|ref|XP_006494482.1| (PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)])

HSP 1 Score: 656.4 bits (1692), Expect = 3.8e-185
Identity = 319/408 (78.19%), Postives = 358/408 (87.75%), Query Frame = 1 

Query: 63  KSFMASSRAQT---DLPQDLDDLLCSDP--HTQRQD-----ECSSLTKSNDSTLLLGSPS 122
           K  MA +R +T   D  QD DDLLCSD   H  +Q+     E SSL ++  S+L   SP 
Sbjct: 24  KPTMAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--ASPR 83

Query: 123 GYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFT 182
           GYLSGE R ERAWAHW+KLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFT
Sbjct: 84  GYLSGEVRAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT 143

Query: 183 ENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGN 242
           E+EKYRN EFTTC+EDRPLFVQFCANDP++LL AARRVEP+CDYVD+NLGCPQRIARRGN
Sbjct: 144 ESEKYRNEEFTTCKEDRPLFVQFCANDPEILLNAARRVEPFCDYVDINLGCPQRIARRGN 203

Query: 243 YGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGR 302
           YGAFLMDNLPLVK++VEK+A NL VPVSCKIRVFPNLQDTI YA+MLEDAGCSLLAVHGR
Sbjct: 204 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 263

Query: 303 TRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLE 362
           TRDEKDGKKFRANW+AI AVKNALRIPVLANGN+RHMEDV  CL+ETG EGVLSAE+LLE
Sbjct: 264 TRDEKDGKKFRANWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 323

Query: 363 NPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDW 422
           NPALFAGF+TA+W  G EESS+DGNL+QADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+W
Sbjct: 324 NPALFAGFQTAEWIVGSEESSKDGNLNQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW 383

Query: 423 FKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAI 461
           F+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 384 FRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDTDDAEI 429

[Close]
BLAST of Cp4.1LG16g01540 vs. NCBI nr
Match: gi|641860404|gb|KDO79093.1| (hypothetical protein CISIN_1g013813mg [Citrus sinensis])

HSP 1 Score: 655.6 bits (1690), Expect = 6.5e-185
Identity = 319/408 (78.19%), Postives = 357/408 (87.50%), Query Frame = 1 

Query: 63  KSFMASSRAQT---DLPQDLDDLLCSDP--HTQRQD-----ECSSLTKSNDSTLLLGSPS 122
           K  MA +R +T   D  QD DDLLCSD   H  +Q+     E SSL ++  S+L   SP 
Sbjct: 24  KPTMAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPR 83

Query: 123 GYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFT 182
           GYLSGE+R ERAWAHW+KLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFT
Sbjct: 84  GYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT 143

Query: 183 ENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGN 242
           E+EKYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGN
Sbjct: 144 ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGN 203

Query: 243 YGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGR 302
           YGAFLMDNLPLVK++VEK+A NL VPVSCKIRVFPNLQDTI YA+MLEDAGCSLLAVHGR
Sbjct: 204 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 263

Query: 303 TRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLE 362
           TRDEKDGKKFRA+W+AI AVKNALRIPVLANGN+RHMEDV  CL+ETG EGVLSAE+LLE
Sbjct: 264 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 323

Query: 363 NPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDW 422
           NPALFAGFRTA+W  G EE S+DGNLDQADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+W
Sbjct: 324 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW 383

Query: 423 FKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAI 461
           F+I P +RED NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 384 FRIQPGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

[Close]
BLAST of Cp4.1LG16g01540 vs. NCBI nr
Match: gi|567866687|ref|XP_006425966.1| (hypothetical protein CICLE_v10025630mg [Citrus clementina])

HSP 1 Score: 652.9 bits (1683), Expect = 4.2e-184
Identity = 318/408 (77.94%), Postives = 356/408 (87.25%), Query Frame = 1 

Query: 63  KSFMASSRAQT---DLPQDLDDLLCSDP--HTQRQD-----ECSSLTKSNDSTLLLGSPS 122
           K  MA +R +T   D  QD DDLLCSD   H  +Q+     E SSL ++  S+L   SP 
Sbjct: 24  KPTMAQTRTRTLHSDPSQDSDDLLCSDSNNHDNQQEQPEHEEPSSLPETASSSL--PSPR 83

Query: 123 GYLSGESRIERAWAHWSKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFT 182
           GYLSGE+R ERAWAHW+KLGRPKLIVAPMVDNSELPFR+LCR+YGAEAAYTPMLHSRIFT
Sbjct: 84  GYLSGEARAERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRRYGAEAAYTPMLHSRIFT 143

Query: 183 ENEKYRNMEFTTCQEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGN 242
           E+EKYRN EF TC+EDRPLFVQFCANDP++LL AARRVEPYCDYVD+NLGCPQRIARRGN
Sbjct: 144 ESEKYRNEEFATCKEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGN 203

Query: 243 YGAFLMDNLPLVKAIVEKVASNLQVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGR 302
           YGAFLMDNLPLVK++VEK+A NL VPVSCKIRVFPNLQDTI YA+MLEDAGCSLLAVHGR
Sbjct: 204 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 263

Query: 303 TRDEKDGKKFRANWSAISAVKNALRIPVLANGNIRHMEDVHNCLQETGVEGVLSAETLLE 362
           TRDEKDGKKFRA+W+AI AVKNALRIPVLANGN+RHMEDV  CL+ETG EGVLSAE+LLE
Sbjct: 264 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 323

Query: 363 NPALFAGFRTAQWTAGCEESSRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKLLGDW 422
           NPALFAGFRTA+W  G EE S+DGNLDQADLLV+YLKLCEKYPVPWRMIRSHVHKLLG+W
Sbjct: 324 NPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW 383

Query: 423 FKIHPHIREDFNAQSKLTFEFLYNMVERLRELQVKIPLYIKDSPASAI 461
           F+I P +R D NAQ++LTFEFLYN+V+RLREL V+IPLY KD+  + I
Sbjct: 384 FRIQPGVRGDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEI 429

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g01540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DUS1L_RAT4.8e-7947.99tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus... [more]
DUS1L_MOUSE8.1e-7947.65tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE... [more]
DUS1L_HUMAN3.1e-7847.65tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE... [more]
DUS1_SCHPO5.8e-6943.71tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (st... [more]
DUS1_YEAST1.9e-6440.95tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (str... [more]
BLAST of Cp4.1LG16g01540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTG2_CUCSA2.1e-21990.57Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428390 PE=4 SV=1[more]
A0A067GH93_CITSI4.5e-18578.19Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013813mg PE=4 SV=1[more]
V4SQ46_9ROSI2.9e-18477.94Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025630mg PE=4 SV=1[more]
A0A067KAE0_JATCU2.1e-18276.69Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12444 PE=4 SV=1[more]
A0A061DGP6_THECC2.7e-18277.22FMN-linked oxidoreductases superfamily protein OS=Theobroma cacao GN=TCM_000679 ... [more]
BLAST of Cp4.1LG16g01540 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G67220.12.9e-17572.95 FMN-linked oxidoreductases superfamily protein[more]
AT3G49640.11.3e-2931.98 Aldolase-type TIM barrel family protein[more]
AT4G38890.11.4e-1526.00 FMN-linked oxidoreductases superfamily protein[more]
AT3G63510.18.5e-1028.89 FMN-linked oxidoreductases superfamily protein[more]
BLAST of Cp4.1LG16g01540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125738|ref|XP_008462837.1|6.0e-22391.27PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|778673658|ref|XP_011650036.1|3.1e-21990.57PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|568883448|ref|XP_006494482.1|3.8e-18578.19PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)][more]
gi|641860404|gb|KDO79093.1|6.5e-18578.19hypothetical protein CISIN_1g013813mg [Citrus sinensis][more]
gi|567866687|ref|XP_006425966.1|4.2e-18477.94hypothetical protein CICLE_v10025630mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR018517tRNA_hU_synthase_CS
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0008033 tRNA processing
cellular_component GO:0005575 cellular_component
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g01540.1Cp4.1LG16g01540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001269tRNA-dihydrouridine synthasePANTHERPTHR11082TRNA-DIHYDROURIDINE SYNTHASEcoord: 67..462
score: 3.5E
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 137..428
score: 2.7
IPR013785Aldolase-type TIM barrelGENE3DG3DSA:3.20.20.70coord: 133..366
score: 3.5
IPR018517tRNA-dihydrouridine synthase, conserved sitePROSITEPS01136UPF0034coord: 217..235
scor
NoneNo IPR availablePANTHERPTHR11082:SF5TRNA-DIHYDROURIDINE(16/17) SYNTHASE [NAD(P)(+)]-LIKEcoord: 67..462
score: 3.5E
NoneNo IPR availableunknownSSF51395FMN-linked oxidoreductasescoord: 134..410
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g01540Cucsa.073200Cucumber (Gy14) v1cgycpeB0111
Cp4.1LG16g01540CmaCh20G009670Cucurbita maxima (Rimu)cmacpeB565
Cp4.1LG16g01540CmaCh02G004880Cucurbita maxima (Rimu)cmacpeB626
Cp4.1LG16g01540CmoCh02G005030Cucurbita moschata (Rifu)cmocpeB575
Cp4.1LG16g01540CmoCh20G009770Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g01540Cla006773Watermelon (97103) v1cpewmB292
Cp4.1LG16g01540Csa2G428390Cucumber (Chinese Long) v2cpecuB270
Cp4.1LG16g01540MELO3C024784Melon (DHL92) v3.5.1cpemeB260
Cp4.1LG16g01540ClCG02G008020Watermelon (Charleston Gray)cpewcgB270
Cp4.1LG16g01540CSPI02G27070Wild cucumber (PI 183967)cpecpiB272
Cp4.1LG16g01540Lsi10G001880Bottle gourd (USVL1VR-Ls)cpelsiB220
Cp4.1LG16g01540MELO3C024784.2Melon (DHL92) v3.6.1cpemedB306
Cp4.1LG16g01540CsaV3_2G035640Cucumber (Chinese Long) v3cpecucB0337
Cp4.1LG16g01540Bhi10G001191Wax gourdcpewgoB0358
Cp4.1LG16g01540CsGy2G026490Cucumber (Gy14) v2cgybcpeB196
Cp4.1LG16g01540Carg25488Silver-seed gourdcarcpeB1322
Cp4.1LG16g01540Carg25159Silver-seed gourdcarcpeB0576
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG16g01540Cp4.1LG05g11800Cucurbita pepo (Zucchini)cpecpeB309
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g01540Cucumber (Gy14) v1cgycpeB0972
Cp4.1LG16g01540Wild cucumber (PI 183967)cpecpiB275
Cp4.1LG16g01540Cucumber (Chinese Long) v2cpecuB272
Cp4.1LG16g01540Watermelon (Charleston Gray)cpewcgB262
Cp4.1LG16g01540Watermelon (97103) v1cpewmB294
Cp4.1LG16g01540Melon (DHL92) v3.5.1cpemeB264
Cp4.1LG16g01540Cucumber (Chinese Long) v3cpecucB0338
Cp4.1LG16g01540Wax gourdcpewgoB0366