Lsi09G018350 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G018350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHfr-2-like protein
Locationchr09 : 27179629 .. 27181401 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCTTCGCCACCGCCCTTGGCGACAGTACCGTTGGAATCAAATCTCTTTTCTTTGATAAGTTTTGGTCGCGTGAATGTGGTAATTGGGTTGTAGTTGGGTCTTGTAATTCCAACCACAATGATCCCAACACTTTGTTCTTTCCCACTAAAGTTAGCAATAACGTTGTTGCTTTGCGTAATTTGGGCAACCAATTGTTTTGCAAGAGATTTACCGATGAGGGAATCATCAGTGGCCTCAGCGCTGTCATTCCTACCATTACTCTAGAGGCACAGCTCGACGTATATGAGCTTGTTGCCACCAGAGAGATCGAAAATGTCGAATTTCGCCTCTCGGATGGCCGGATCTACGACAAGTTACTATTGTTGCTACTGACGTTATGGCGAACTATTTTTTTTTTTTTTAATCTTTTGAAATATTTTAATTATTTTTTTGGTGTGAGTGATGGAAGGGAAATCATAGAGATGAGTGCATCCTATTACCTTTACTTTTATGAGAAAAAAAATACATTCTTGATTTCTAAGTTTTCAATTTAGTTTTTTTTTTCAATATTTTACACTTTTATTTTTGAATTTTTTTTTGCTAATGCTCATTTTTTGCTTTTGATATTAATTTTTTTAATTAATTAAAATAATTATGATGTGAATATTCATATTGATGAAAAATTAATGAATACTAATTTAATTAATGTTAATCTATAAACATTAACACAATGGGTATTTGGTAAAAAATTGAATAAATATGAACAAGACTCAAAACTAGGATAATTAAAAAGGTAACGTTTTTAAACCTAAGAACCACAATGAAAATTAAACTCAAAACTCATAGGTAAAAGTTTTTATAGCTTTTTTAAACTTAAAAATCGAATACAATCTAGATTTAAAACTTACCGACTAAATTATTATTTTCACTTGATTTTAAAAAAAATTATGACTATTTTTTAAAACTTGAATGATTAAAATAGATATTTTAAAATTCAAAGTCCAAAATAAAATGAATTTACAAATGAAAAATATTAAACTATCAAACTCCAAATCTAAGATTCGATCTCTCACCTCACATATTGTGAAAAAAAATGAGAAAATTGAAAGTTGATGACAAAAATGAGATTTAAATCTATGTAGACTAATAAATGAATATTTTATGGCAATAAATTTCAAATAAAATATTTAGGTTGTAAAAAATATTTGGGTGCATTTTAAGCTGCCACCCAGCTATCTAATCAATTTTTTCCACGTGTCAAACATAAGAAAAAGAATAGTCTTAAGTTTTTCTTTTACTATGTAATTAAAAGTGAGACATGAAGATGGGTGCAATTCAAGTAAAATTGAGGTTCCATCGTGATGTAGGTTGCTGCAACCTGCTGTAATCGATGTGAAACTTTCGTACGACGACACAAAGGTAAGTGCTTGGAGATCTACTGTTTCAGTGAAGCTAGATGTGGAAACAAGCATCATCAAATCGAGCATTCCTGTCATTTTCGACGATAAGCTAGCGATTGGACCGGAGTTTTCAGGAGAATACGAATGGGGAGAAGCTAAGAACTTGACGAAGAAAGTGGAGACTGTACACAAGGTTCTTGTGCAGCCATTGACAAAGGTGAGAGTGAATTTGGTGGCAACACAAGCTTCATGCGATGTGCCATTCTCTTACACACAAAATGATACCCTCATCAATGGCCAAAACATTTCACTCAACATGGAAGATGGGGTTTACAAGGGAATCAATCTTTACAACTTTAAGTTTGAAACTGAATCGTGGAAGCTGTGA

mRNA sequence

ATGAGGTTGCTGCAACCTGCTGTAATCGATGTGAAACTTTCGTACGACGACACAAAGGTAAGTGCTTGGAGATCTACTGTTTCAGTGAAGCTAGATGTGGAAACAAGCATCATCAAATCGAGCATTCCTGTCATTTTCGACGATAAGCTAGCGATTGGACCGGAGTTTTCAGGAGAATACGAATGGGGAGAAGCTAAGAACTTGACGAAGAAAGTGGAGACTGTACACAAGGTTCTTGTGCAGCCATTGACAAAGGTGAGAGTGAATTTGGTGGCAACACAAGCTTCATGCGATGTGCCATTCTCTTACACACAAAATGATACCCTCATCAATGGCCAAAACATTTCACTCAACATGGAAGATGGGGTTTACAAGGGAATCAATCTTTACAACTTTAAGTTTGAAACTGAATCGTGGAAGCTGTGA

Coding sequence (CDS)

ATGAGGTTGCTGCAACCTGCTGTAATCGATGTGAAACTTTCGTACGACGACACAAAGGTAAGTGCTTGGAGATCTACTGTTTCAGTGAAGCTAGATGTGGAAACAAGCATCATCAAATCGAGCATTCCTGTCATTTTCGACGATAAGCTAGCGATTGGACCGGAGTTTTCAGGAGAATACGAATGGGGAGAAGCTAAGAACTTGACGAAGAAAGTGGAGACTGTACACAAGGTTCTTGTGCAGCCATTGACAAAGGTGAGAGTGAATTTGGTGGCAACACAAGCTTCATGCGATGTGCCATTCTCTTACACACAAAATGATACCCTCATCAATGGCCAAAACATTTCACTCAACATGGAAGATGGGGTTTACAAGGGAATCAATCTTTACAACTTTAAGTTTGAAACTGAATCGTGGAAGCTGTGA

Protein sequence

MRLLQPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYEWGEAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMEDGVYKGINLYNFKFETESWKL
BLAST of Lsi09G018350 vs. TrEMBL
Match: A0A0A0KA14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084570 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-54
Identity = 110/137 (80.29%), Postives = 124/137 (90.51%), Query Frame = 1

Query: 2   RLLQPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPE-FSGEY 61
           R  Q AVIDVKLSY+DT+VSAW STVS KLDVETS+IKSS+P+IF++ LAIGPE FSGEY
Sbjct: 335 RTKQLAVIDVKLSYNDTRVSAWSSTVSAKLDVETSVIKSSVPIIFEETLAIGPELFSGEY 394

Query: 62  EWGEAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNME 121
           +WGE  NLTKKV+TVHKVLVQP + VRVNLVATQAS DVPFSYTQNDTLI+G+ ISLNME
Sbjct: 395 DWGEDTNLTKKVDTVHKVLVQPCSNVRVNLVATQASYDVPFSYTQNDTLISGEKISLNME 454

Query: 122 DGVYKGINLYNFKFETE 138
           DG+YKG+NLYNFKFETE
Sbjct: 455 DGIYKGVNLYNFKFETE 471

BLAST of Lsi09G018350 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-32
Identity = 70/131 (53.44%), Postives = 97/131 (74.05%), Query Frame = 1

Query: 11  VKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYEWGEAKNLTK 70
           VKLSY +TK   W+ +VS+KL V+ ++ +S +P I D KL I  EFSG YEWGE +++T 
Sbjct: 336 VKLSYTETKSRTWKGSVSLKLGVKMTM-ESGVPFIADGKLEISSEFSGTYEWGETESVTT 395

Query: 71  KVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMEDGVYKGINLY 130
            +ETV+ V V  +TKV V+++ATQ SCDVPFSYTQ+DTL +G+N+  NM+DGVY G+N +
Sbjct: 396 AMETVYNVTVPAMTKVTVSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCF 455

Query: 131 NFKFETESWKL 142
           N K+ T+  KL
Sbjct: 456 NVKYHTKEEKL 465

BLAST of Lsi09G018350 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 67/137 (48.91%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 5   QPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYEWGE 64
           +P    VKLSY +TK   W+ +VS+KL V+ ++ +S +P I D KL I  EFSG YEWG 
Sbjct: 330 EPHTQQVKLSYTETKSRTWKGSVSLKLGVKITM-ESGVPFIADGKLEISSEFSGTYEWGG 389

Query: 65  AKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMEDGVY 124
            +++T  +ET++ V V  +T+V V+++ATQ SCDVPFSY+Q DTL +G+N+  NM+DGVY
Sbjct: 390 TESVTTAMETLYNVTVPAMTRVTVSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVY 449

Query: 125 KGINLYNFKFETESWKL 142
            G+N +N K++T+  KL
Sbjct: 450 NGVNCFNVKYQTKEEKL 465

BLAST of Lsi09G018350 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 67/140 (47.86%), Postives = 98/140 (70.00%), Query Frame = 1

Query: 2   RLLQPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYE 61
           R  +P    VKLSY +TK S W+ +VS+KL V+ ++ +S +P I + KL I  EFSG YE
Sbjct: 327 RTHEPHTQQVKLSYTETKSSTWKGSVSLKLGVKITM-ESGVPFIANGKLEISSEFSGAYE 386

Query: 62  WGEAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMED 121
           WGE +++T  +ET++ V V  +T+V V+++ T+ SCDVPFSYTQ DTL +G+ +  NM+D
Sbjct: 387 WGETESVTTAMETMYNVTVPAMTRVTVSMIGTKGSCDVPFSYTQRDTLTDGKIVVDNMDD 446

Query: 122 GVYKGINLYNFKFETESWKL 142
           GVY G+N +N K+ET+   L
Sbjct: 447 GVYVGVNCFNVKYETKEENL 465

BLAST of Lsi09G018350 vs. TrEMBL
Match: D7U3H9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.1e-29
Identity = 67/139 (48.20%), Postives = 95/139 (68.35%), Query Frame = 1

Query: 5   QPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGE--YEW 64
           +P    VKLSY +T    W+ +VS+K  V+ +I +S +P I D KL +  EFSG   YEW
Sbjct: 330 EPHTQQVKLSYTETNSRTWKGSVSLKSGVKITI-ESGVPFIADGKLEVSSEFSGTGTYEW 389

Query: 65  GEAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMEDG 124
           GE ++LT   ETV+ V V   T+V ++++ATQ SCDVPFSYTQ DTL +G+N+  NM+DG
Sbjct: 390 GETESLTTAKETVYSVTVPARTRVTISMIATQGSCDVPFSYTQRDTLTDGKNVVYNMDDG 449

Query: 125 VYKGINLYNFKFETESWKL 142
           VY G+N +N +++T+  KL
Sbjct: 450 VYVGVNCFNVEYQTKEEKL 467

BLAST of Lsi09G018350 vs. NCBI nr
Match: gi|449445850|ref|XP_004140685.1| (PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 110/137 (80.29%), Postives = 124/137 (90.51%), Query Frame = 1

Query: 2   RLLQPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPE-FSGEY 61
           R  Q AVIDVKLSY+DT+VSAW STVS KLDVETS+IKSS+P+IF++ LAIGPE FSGEY
Sbjct: 335 RTKQLAVIDVKLSYNDTRVSAWSSTVSAKLDVETSVIKSSVPIIFEETLAIGPELFSGEY 394

Query: 62  EWGEAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNME 121
           +WGE  NLTKKV+TVHKVLVQP + VRVNLVATQAS DVPFSYTQNDTLI+G+ ISLNME
Sbjct: 395 DWGEDTNLTKKVDTVHKVLVQPCSNVRVNLVATQASYDVPFSYTQNDTLISGEKISLNME 454

Query: 122 DGVYKGINLYNFKFETE 138
           DG+YKG+NLYNFKFETE
Sbjct: 455 DGIYKGVNLYNFKFETE 471

BLAST of Lsi09G018350 vs. NCBI nr
Match: gi|659120119|ref|XP_008460024.1| (PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 3.0e-48
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 1

Query: 5   QPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPE-FSGEYEWG 64
           QP VI VKLSY++T+VSAW STVSVKL+VET +I+SSIP+IF++ LAIGPE FSGEY+WG
Sbjct: 339 QPDVIAVKLSYNNTRVSAWSSTVSVKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWG 398

Query: 65  EAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNI-SLNMEDG 124
           E KNLTKKVETVHKVLVQP +KVRVNLVATQAS DVPFSYTQNDTLI+   I +  MEDG
Sbjct: 399 EDKNLTKKVETVHKVLVQPCSKVRVNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDG 458

Query: 125 VYKGINLYNFKFE 136
           +YKG+NLYNFKFE
Sbjct: 459 IYKGVNLYNFKFE 471

BLAST of Lsi09G018350 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 146.0 bits (367), Expect = 5.1e-32
Identity = 70/131 (53.44%), Postives = 97/131 (74.05%), Query Frame = 1

Query: 11  VKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYEWGEAKNLTK 70
           VKLSY +TK   W+ +VS+KL V+ ++ +S +P I D KL I  EFSG YEWGE +++T 
Sbjct: 336 VKLSYTETKSRTWKGSVSLKLGVKMTM-ESGVPFIADGKLEISSEFSGTYEWGETESVTT 395

Query: 71  KVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMEDGVYKGINLY 130
            +ETV+ V V  +TKV V+++ATQ SCDVPFSYTQ+DTL +G+N+  NM+DGVY G+N +
Sbjct: 396 AMETVYNVTVPAMTKVTVSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCF 455

Query: 131 NFKFETESWKL 142
           N K+ T+  KL
Sbjct: 456 NVKYHTKEEKL 465

BLAST of Lsi09G018350 vs. NCBI nr
Match: gi|225465417|ref|XP_002264098.1| (PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera])

HSP 1 Score: 142.1 bits (357), Expect = 7.3e-31
Identity = 67/137 (48.91%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 5   QPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYEWGE 64
           +P    VKLSY +TK   W+ +VS+KL V+ ++ +S +P I D KL I  EFSG YEWG 
Sbjct: 330 EPHTQQVKLSYTETKSRTWKGSVSLKLGVKITM-ESGVPFIADGKLEISSEFSGTYEWGG 389

Query: 65  AKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMEDGVY 124
            +++T  +ET++ V V  +T+V V+++ATQ SCDVPFSY+Q DTL +G+N+  NM+DGVY
Sbjct: 390 TESVTTAMETLYNVTVPAMTRVTVSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVY 449

Query: 125 KGINLYNFKFETESWKL 142
            G+N +N K++T+  KL
Sbjct: 450 NGVNCFNVKYQTKEEKL 465

BLAST of Lsi09G018350 vs. NCBI nr
Match: gi|645281008|ref|XP_008245436.1| (PREDICTED: uncharacterized protein LOC103343557 [Prunus mume])

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 65/135 (48.15%), Postives = 98/135 (72.59%), Query Frame = 1

Query: 2   RLLQPAVIDVKLSYDDTKVSAWRSTVSVKLDVETSIIKSSIPVIFDDKLAIGPEFSGEYE 61
           R  +   ID++LSY D++ S W S+VS+KL + T + ++ +P+I   ++ I  EF+ E++
Sbjct: 332 RTQEENTIDLRLSYKDSRSSTWNSSVSMKLGLSTKV-QTGVPLIAKGEIEISTEFATEFQ 391

Query: 62  WGEAKNLTKKVETVHKVLVQPLTKVRVNLVATQASCDVPFSYTQNDTLINGQNISLNMED 121
           WGE      +VETV++V+V P++ V+V+L+AT+ SCDVPFSYTQ DTLING  ++  M+D
Sbjct: 392 WGETNTSESEVETVYRVVVPPMSMVKVSLMATRGSCDVPFSYTQRDTLINGTTVTQTMDD 451

Query: 122 GVYKGINLYNFKFET 137
           GVY G+N YNFK+ET
Sbjct: 452 GVYTGVNSYNFKYET 465

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KA14_CUCSA1.5e-5480.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084570 PE=4 SV=1[more]
F6HZZ7_VITVI3.5e-3253.44Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=... [more]
D7U3H5_VITVI5.1e-3148.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=... [more]
F6HZZ6_VITVI1.3e-2947.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=... [more]
D7U3H9_VITVI8.1e-2948.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06060 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449445850|ref|XP_004140685.1|2.1e-5480.29PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus][more]
gi|659120119|ref|XP_008460024.1|3.0e-4877.44PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo][more]
gi|225465427|ref|XP_002264911.1|5.1e-3253.44PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera][more]
gi|225465417|ref|XP_002264098.1|7.3e-3148.91PREDICTED: uncharacterized protein LOC100256767 [Vitis vinifera][more]
gi|645281008|ref|XP_008245436.1|1.6e-3048.15PREDICTED: uncharacterized protein LOC103343557 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023307Aerolysin-like toxin, beta complex domain
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G018350.1Lsi09G018350.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 9..139
score: 1.0
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 2..141
score: 1.8
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 22..137
score: 7.32

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G018350CSPI06G06590Wild cucumber (PI 183967)cpilsiB404
Lsi09G018350Cla007027Watermelon (97103) v1lsiwmB041
Lsi09G018350CsGy6G006590Cucumber (Gy14) v2cgyblsiB366
The following gene(s) are paralogous to this gene:

None