CSPI06G06590 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G06590
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPore-forming toxin-like protein Hfr-2
LocationChr6 : 5695779 .. 5696217 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTTGGTTCGACGGTGGTGAAGGACAAAACAACCCGCTGTGATAGATGTGAAACTTTCATACAACGACACGAGGGTAAGTGCTTGGAGCTCTACAGTTTCGGTGAAGCTCGACGTGGAAACAAGCGTCATCAAATCGAGCGTTCCCATCATTTTTGAAGAGACTCTGGCGATTGGACCTGAGTTGTTTTCAGGAGAATATGATTGGGGAGAAGATACGAACTTGACAAAGAAGGTGGATACTGTGCACAAGGTTTTGGTGCAGCCATGCTCGAATGTTAGAGTGAATTTGGTGGCAACACAAGCTTCATATGATGTGCCATTCTCTTACACACAGAATGATACTCTCATTAGTGGCGAAAAGATTTCACTCAACATGGAAGATGGGATTTACAAGGGAGTTAATCTTTACAACTTTAAGTTTGAAACTGAATGA

mRNA sequence

ATGATATTTGGTTCGACGGTGGTGAAGGACAAAACAACCCGCTGTGATAGATGTGAAACTTTCATACAACGACACGAGGTTTCGGTGAAGCTCGACGTGGAAACAAGCGTCATCAAATCGAGCGTTCCCATCATTTTTGAAGAGACTCTGGCGATTGGACCTGAGTTGTTTTCAGGAGAATATGATTGGGGAGAAGATACGAACTTGACAAAGAAGGTGGATACTGTGCACAAGGTTTTGGTGCAGCCATGCTCGAATGTTAGAGTGAATTTGGTGGCAACACAAGCTTCATATGATGTGCCATTCTCTTACACACAGAATGATACTCTCATTAGTGGCGAAAAGATTTCACTCAACATGGAAGATGGGATTTACAAGGGAGTTAATCTTTACAACTTTAAGTTTGAAACTGAATGA

Coding sequence (CDS)

ATGATATTTGGTTCGACGGTGGTGAAGGACAAAACAACCCGCTGTGATAGATGTGAAACTTTCATACAACGACACGAGGTTTCGGTGAAGCTCGACGTGGAAACAAGCGTCATCAAATCGAGCGTTCCCATCATTTTTGAAGAGACTCTGGCGATTGGACCTGAGTTGTTTTCAGGAGAATATGATTGGGGAGAAGATACGAACTTGACAAAGAAGGTGGATACTGTGCACAAGGTTTTGGTGCAGCCATGCTCGAATGTTAGAGTGAATTTGGTGGCAACACAAGCTTCATATGATGTGCCATTCTCTTACACACAGAATGATACTCTCATTAGTGGCGAAAAGATTTCACTCAACATGGAAGATGGGATTTACAAGGGAGTTAATCTTTACAACTTTAAGTTTGAAACTGAATGA
Homology
[Close]
BLAST of CSPI06G06590 vs. TrEMBL
Match: A0A0A0KA14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084570 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.7e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS KLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN
Sbjct: 360 VSAKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 419

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
           VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE
Sbjct: 420 VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 471

[Close]
BLAST of CSPI06G06590 vs. TrEMBL
Match: F6HZZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-20
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS+KL V+ ++ +S VP I +  L I  E FSG Y+WGE  ++T  ++TV+ V V   + 
Sbjct: 352 VSLKLGVKMTM-ESGVPFIADGKLEISSE-FSGTYEWGETESVTTAMETVYNVTVPAMTK 411

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
           V V+++ATQ S DVPFSYTQ+DTL  G+ +  NM+DG+Y GVN +N K+ T+
Sbjct: 412 VTVSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTK 461

[Close]
BLAST of CSPI06G06590 vs. TrEMBL
Match: A5AYS3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-19
Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELF-SGEYDWGEDTNLTKKVDTVHKVLVQPCS 86
           VS+K  V+ + I+S VP I +  L +  E   +G Y+WGE  +LT   +TV+ V V   +
Sbjct: 353 VSLKSGVKIT-IESGVPFIADGKLEVSSEFSGTGTYEWGETESLTTAXETVYSVTVPART 412

Query: 87  NVRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
            V ++++ATQ SYDVPFSYTQ DTL  G+ +  NM+DG+Y GVN +N +++T+
Sbjct: 413 RVTISMIATQGSYDVPFSYTQRDTLTDGQNVVYNMDDGVYVGVNCFNVEYQTK 464

[Close]
BLAST of CSPI06G06590 vs. TrEMBL
Match: D7U3H5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-19
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS+KL V+ ++ +S VP I +  L I  E FSG Y+WG   ++T  ++T++ V V   + 
Sbjct: 352 VSLKLGVKITM-ESGVPFIADGKLEISSE-FSGTYEWGGTESVTTAMETLYNVTVPAMTR 411

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
           V V+++ATQ S DVPFSY+Q DTL  G+ +  NM+DG+Y GVN +N K++T+
Sbjct: 412 VTVSMIATQGSCDVPFSYSQRDTLTDGKNVIYNMDDGVYNGVNCFNVKYQTK 461

[Close]
BLAST of CSPI06G06590 vs. TrEMBL
Match: F6HZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-18
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS+KL V+ ++ +S VP I    L I  E FSG Y+WGE  ++T  ++T++ V V   + 
Sbjct: 352 VSLKLGVKITM-ESGVPFIANGKLEISSE-FSGAYEWGETESVTTAMETMYNVTVPAMTR 411

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
           V V+++ T+ S DVPFSYTQ DTL  G+ +  NM+DG+Y GVN +N K+ET+
Sbjct: 412 VTVSMIGTKGSCDVPFSYTQRDTLTDGKIVVDNMDDGVYVGVNCFNVKYETK 461

[Close]
BLAST of CSPI06G06590 vs. NCBI nr
Match: gi|449445850|ref|XP_004140685.1| (PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS KLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN
Sbjct: 360 VSAKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 419

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
           VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE
Sbjct: 420 VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 471

[Close]
BLAST of CSPI06G06590 vs. NCBI nr
Match: gi|659120119|ref|XP_008460024.1| (PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-45
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VSVKL+VET VI+SS+PIIFEETLAIGPE FSGEYDWGED NLTKKV+TVHKVLVQPCS 
Sbjct: 361 VSVKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSK 420

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKI-SLNMEDGIYKGVNLYNFKFE 137
           VRVNLVATQASYDVPFSYTQNDTLIS   I +  MEDGIYKGVNLYNFKFE
Sbjct: 421 VRVNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNLYNFKFE 471

[Close]
BLAST of CSPI06G06590 vs. NCBI nr
Match: gi|645281008|ref|XP_008245436.1| (PREDICTED: uncharacterized protein LOC103343557 [Prunus mume])

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS+KL + T V ++ VP+I +  + I  E F+ E+ WGE      +V+TV++V+V P S 
Sbjct: 357 VSMKLGLSTKV-QTGVPLIAKGEIEISTE-FATEFQWGETNTSESEVETVYRVVVPPMSM 416

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFET 138
           V+V+L+AT+ S DVPFSYTQ DTLI+G  ++  M+DG+Y GVN YNFK+ET
Sbjct: 417 VKVSLMATRGSCDVPFSYTQRDTLINGTTVTQTMDDGVYTGVNSYNFKYET 465

[Close]
BLAST of CSPI06G06590 vs. NCBI nr
Match: gi|225465427|ref|XP_002264911.1| (PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 7.5e-20
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSN 86
           VS+KL V+ ++ +S VP I +  L I  E FSG Y+WGE  ++T  ++TV+ V V   + 
Sbjct: 352 VSLKLGVKMTM-ESGVPFIADGKLEISSE-FSGTYEWGETESVTTAMETVYNVTVPAMTK 411

Query: 87  VRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
           V V+++ATQ S DVPFSYTQ+DTL  G+ +  NM+DG+Y GVN +N K+ T+
Sbjct: 412 VTVSMIATQGSCDVPFSYTQHDTLTDGKNVVYNMDDGVYVGVNCFNVKYHTK 461

[Close]
BLAST of CSPI06G06590 vs. NCBI nr
Match: gi|147838248|emb|CAN71829.1| (hypothetical protein VITISV_020655 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 27  VSVKLDVETSVIKSSVPIIFEETLAIGPELF-SGEYDWGEDTNLTKKVDTVHKVLVQPCS 86
           VS+K  V+ + I+S VP I +  L +  E   +G Y+WGE  +LT   +TV+ V V   +
Sbjct: 353 VSLKSGVKIT-IESGVPFIADGKLEVSSEFSGTGTYEWGETESLTTAXETVYSVTVPART 412

Query: 87  NVRVNLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 139
            V ++++ATQ SYDVPFSYTQ DTL  G+ +  NM+DG+Y GVN +N +++T+
Sbjct: 413 RVTISMIATQGSYDVPFSYTQRDTLTDGQNVVYNMDDGVYVGVNCFNVEYQTK 464

The following BLAST results are available for this feature:
BLAST of CSPI06G06590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G06590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA14_CUCSA7.7e-5699.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G084570 PE=4 SV=1[more]
F6HZZ7_VITVI5.2e-2047.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06110 PE=4 SV=... [more]
A5AYS3_VITVI7.5e-1944.25Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020655 PE=4 SV=1[more]
D7U3H5_VITVI9.8e-1944.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06000 PE=4 SV=... [more]
F6HZZ6_VITVI2.9e-1845.54Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g06090 PE=4 SV=... [more]
BLAST of CSPI06G06590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G06590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445850|ref|XP_004140685.1|1.1e-5599.11PREDICTED: uncharacterized protein LOC101213433 [Cucumis sativus][more]
gi|659120119|ref|XP_008460024.1|1.8e-4586.49PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo][more]
gi|645281008|ref|XP_008245436.1|4.0e-2149.55PREDICTED: uncharacterized protein LOC103343557 [Prunus mume][more]
gi|225465427|ref|XP_002264911.1|7.5e-2047.32PREDICTED: uncharacterized protein LOC100263724 [Vitis vinifera][more]
gi|147838248|emb|CAN71829.1|1.1e-1844.25hypothetical protein VITISV_020655 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023307Aerolysin-like toxin, beta complex domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G06590.1CSPI06G06590.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023307Aerolysin-like toxin, beta complex domainGENE3DG3DSA:2.170.15.10coord: 24..137
score: 3.5
NoneNo IPR availablePANTHERPTHR39244FAMILY NOT NAMEDcoord: 27..138
score: 1.9
NoneNo IPR availableunknownSSF56973Aerolisin/ETX pore-forming domaincoord: 38..138
score: 4.45

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G06590Lsi09G018350Bottle gourd (USVL1VR-Ls)cpilsiB404
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G06590Cucurbita moschata (Rifu)cmocpiB367
CSPI06G06590Cucurbita moschata (Rifu)cmocpiB907
CSPI06G06590Cucumber (Chinese Long) v2cpicuB314
CSPI06G06590Melon (DHL92) v3.5.1cpimeB433
CSPI06G06590Watermelon (Charleston Gray)cpiwcgB503
CSPI06G06590Watermelon (97103) v1cpiwmB556
CSPI06G06590Cucurbita pepo (Zucchini)cpecpiB328
CSPI06G06590Melon (DHL92) v3.6.1cpimedB431
CSPI06G06590Cucumber (Gy14) v2cgybcpiB288
CSPI06G06590Silver-seed gourdcarcpiB0095
CSPI06G06590Silver-seed gourdcarcpiB0804
CSPI06G06590Cucumber (Chinese Long) v3cpicucB364
CSPI06G06590Watermelon (97103) v2cpiwmbB495
CSPI06G06590Wax gourdcpiwgoB548
CSPI06G06590Cucumber (Gy14) v1cgycpiB517
CSPI06G06590Cucumber (Gy14) v1cgycpiB540
CSPI06G06590Cucurbita maxima (Rimu)cmacpiB379
CSPI06G06590Cucurbita maxima (Rimu)cmacpiB928