Lsi09G017420 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G017420
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtoheme IX farnesyltransferase
Locationchr09 : 26061903 .. 26062301 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAAATGGTCGTTACGCCACCCTCGTTCTTCACCCCGAGTTGCTTGTTCATTGTCGTTAATTTCATTGTCGTCTACATCCTCGGGGAACAAAAGCTTGCCGGTGCAAAATCGTCTTCGATGAACAAAATGTATGATGAATACTACATTGAGAGTACTATGGAGATGAACATGAATCCTAGTGAAAATATGAAACAATTGGTTGAGAAAGTGGTGGAAGAAAAAGAAGAGGAAGAGATCAGCTCCGTCGAGGGCGACAACAGTGTCGATGTGAGTGAAAAAGAGAGCGAAGGCGATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTTTGGATTATTGTTTGTAG

mRNA sequence

ATGATCAAAATGGTCGTTACGCCACCCTCGTTCTTCACCCCGAGTTGCTTGTTCATTGTCGTTAATTTCATTGTCGTCTACATCCTCGGGGAACAAAAGCTTGCCGGTGCAAAATCGTCTTCGATGAACAAAATGTATGATGAATACTACATTGAGAGTACTATGGAGATGAACATGAATCCTAGTGAAAATATGAAACAATTGGTTGAGAAAGTGGTGGAAGAAAAAGAAGAGGAAGAGATCAGCTCCGTCGAGGGCGACAACAGTGTCGATGTGAGTGAAAAAGAGAGCGAAGGCGATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTTTGGATTATTGTTTGTAG

Coding sequence (CDS)

ATGATCAAAATGGTCGTTACGCCACCCTCGTTCTTCACCCCGAGTTGCTTGTTCATTGTCGTTAATTTCATTGTCGTCTACATCCTCGGGGAACAAAAGCTTGCCGGTGCAAAATCGTCTTCGATGAACAAAATGTATGATGAATACTACATTGAGAGTACTATGGAGATGAACATGAATCCTAGTGAAAATATGAAACAATTGGTTGAGAAAGTGGTGGAAGAAAAAGAAGAGGAAGAGATCAGCTCCGTCGAGGGCGACAACAGTGTCGATGTGAGTGAAAAAGAGAGCGAAGGCGATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTTTGGATTATTGTTTGTAG

Protein sequence

MIKMVVTPPSFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEYYIESTMEMNMNPSENMKQLVEKVVEEKEEEEISSVEGDNSVDVSEKESEGDCELANEELNKRAEAFIARVNKQRKLEALDYCL
Homology
[Close]
BLAST of Lsi09G017420 vs. TrEMBL
Match: A0A0A0K9L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094140 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-44
Identity = 101/131 (77.10%), Postives = 115/131 (87.79%), Query Frame = 1 

Query: 1   MIKMVVTPPSFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEYYIESTMEMN-M 60
           +IKMV TPPSFF+PSCLF++VNFIVVYI+GEQKL GAKS+ MN MYDEYYIE T+EM  +
Sbjct: 56  IIKMVATPPSFFSPSCLFVIVNFIVVYIVGEQKLTGAKSAFMNTMYDEYYIERTLEMKYL 115

Query: 61  NPSENMKQL-VEKVVEEKEEEEISSVEGDNSVDVSEKESEGDCELANEELNKRAEAFIAR 120
           NP ENMK+L VEK VEEKEEE IS +E DN +  SEKE+EGDC+LANEELNKRAEAFIAR
Sbjct: 116 NPCENMKELVVEKFVEEKEEEGISPIEDDNGIGFSEKENEGDCKLANEELNKRAEAFIAR 175

Query: 121 VNKQRKLEALD 130
           VNKQRKLEA+D
Sbjct: 176 VNKQRKLEAVD 186

[Close]
BLAST of Lsi09G017420 vs. TrEMBL
Match: M5XMS0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027025mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 61/156 (39.10%), Postives = 78/156 (50.00%), Query Frame = 1 

Query: 11  FFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEY-------------YIESTMEM 70
           FF P CLFIVVNFIVV+++GE +L+G +SS  N+MY+EY             + E   E 
Sbjct: 68  FFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAPTSMFQEKKEER 127

Query: 71  NMNPSENMKQLVEKVVEEKEEEEISSVEGDNSVDVSEKESEGDCE--------------- 128
              P  + K+   K++EEKE +E    + +   D   KE EG  E               
Sbjct: 128 TELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKEEEKEKKEEEIE 187

[Close]
BLAST of Lsi09G017420 vs. TrEMBL
Match: B9GMN7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13520g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-09
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 1 

Query: 10  SFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEYY----------------IES 69
           S+F P CLFI+VN IVV+++GE +L G++SS +  +YD+Y                  +S
Sbjct: 65  SYFGPKCLFILVNVIVVFLVGESRLVGSQSSPVGGIYDDYVERSRSLRGVSTHQDKAEDS 124

Query: 70  TMEMNMNPSENM--KQLVEKVVEEKEEEEISSVEGDNSV--------------DVSEKES 127
             E++ +   N+  K++V K  ++KE  E+++ EGD  V              D+ E+E 
Sbjct: 125 KPEIDQDQQTNIQDKEVVVKAEDDKEVTELTN-EGDKDVHEEAGVEDDQHEEKDIIEEED 184

[Close]
BLAST of Lsi09G017420 vs. TrEMBL
Match: W9R7T7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017468 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 62/162 (38.27%), Postives = 79/162 (48.77%), Query Frame = 1 

Query: 10  SFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEY------------YI-----E 69
           SF  P CLFIV N IV +++GE KL G++ S  N +YDEY            Y      E
Sbjct: 54  SFLNPKCLFIVFNVIVAFLVGESKLLGSQPSPANDIYDEYVARSRRFQGQHKYFSNLGEE 113

Query: 70  STMEMNMNPSENMKQLV-----------------EKVVEEKEEEEISS-----VEGDNSV 128
              E  +   +  K++V                 EK+ EE+EEEE         E +N++
Sbjct: 114 QKEERKLEVLDVSKEIVYEDKEIALEDKQDKHDHEKLEEEEEEEEEEDDDEEFKEAENNI 173

[Close]
BLAST of Lsi09G017420 vs. TrEMBL
Match: B9GZL9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16660g PE=4 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-08
Identity = 58/167 (34.73%), Postives = 78/167 (46.71%), Query Frame = 1 

Query: 10  SFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEYY----------------IES 69
           SFF+P CLFI+VN IVV+++GE +  G+ SS + ++YDEY                  ES
Sbjct: 41  SFFSPKCLFILVNVIVVFLVGESRFGGSHSSPVGEIYDEYVERSWSLRGVSTHQDKAEES 100

Query: 70  TMEMNMNPSENMKQLVEKVVEEKEEEEISSVEGDNSVDVSEKESEGDCELAN-------- 128
            +E+N    E   Q  +K V  KEE +  + +GD  V V E++     EL N        
Sbjct: 101 KLEVNWVDQETNVQ--DKEVVLKEEVDELTNKGDKEVAVKEEDGREANELTNKGKKDAHE 160

[Close]
BLAST of Lsi09G017420 vs. NCBI nr
Match: gi|700191241|gb|KGN46445.1| (hypothetical protein Csa_6G094140 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 7.0e-44
Identity = 101/131 (77.10%), Postives = 115/131 (87.79%), Query Frame = 1 

Query: 1   MIKMVVTPPSFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEYYIESTMEMN-M 60
           +IKMV TPPSFF+PSCLF++VNFIVVYI+GEQKL GAKS+ MN MYDEYYIE T+EM  +
Sbjct: 56  IIKMVATPPSFFSPSCLFVIVNFIVVYIVGEQKLTGAKSAFMNTMYDEYYIERTLEMKYL 115

Query: 61  NPSENMKQL-VEKVVEEKEEEEISSVEGDNSVDVSEKESEGDCELANEELNKRAEAFIAR 120
           NP ENMK+L VEK VEEKEEE IS +E DN +  SEKE+EGDC+LANEELNKRAEAFIAR
Sbjct: 116 NPCENMKELVVEKFVEEKEEEGISPIEDDNGIGFSEKENEGDCKLANEELNKRAEAFIAR 175

Query: 121 VNKQRKLEALD 130
           VNKQRKLEA+D
Sbjct: 176 VNKQRKLEAVD 186

[Close]
BLAST of Lsi09G017420 vs. NCBI nr
Match: gi|596114551|ref|XP_007221609.1| (hypothetical protein PRUPE_ppa027025mg [Prunus persica])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 61/156 (39.10%), Postives = 78/156 (50.00%), Query Frame = 1 

Query: 11  FFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEY-------------YIESTMEM 70
           FF P CLFIVVNFIVV+++GE +L+G +SS  N+MY+EY             + E   E 
Sbjct: 68  FFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEYVERTRSLRAPTSMFQEKKEER 127

Query: 71  NMNPSENMKQLVEKVVEEKEEEEISSVEGDNSVDVSEKESEGDCE--------------- 128
              P  + K+   K++EEKE +E    + +   D   KE EG  E               
Sbjct: 128 TELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKEEEKEKKEEEIE 187

[Close]
BLAST of Lsi09G017420 vs. NCBI nr
Match: gi|224053519|ref|XP_002297853.1| (hypothetical protein POPTR_0001s13520g [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-09
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 1 

Query: 10  SFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEYY----------------IES 69
           S+F P CLFI+VN IVV+++GE +L G++SS +  +YD+Y                  +S
Sbjct: 65  SYFGPKCLFILVNVIVVFLVGESRLVGSQSSPVGGIYDDYVERSRSLRGVSTHQDKAEDS 124

Query: 70  TMEMNMNPSENM--KQLVEKVVEEKEEEEISSVEGDNSV--------------DVSEKES 127
             E++ +   N+  K++V K  ++KE  E+++ EGD  V              D+ E+E 
Sbjct: 125 KPEIDQDQQTNIQDKEVVVKAEDDKEVTELTN-EGDKDVHEEAGVEDDQHEEKDIIEEED 184

[Close]
BLAST of Lsi09G017420 vs. NCBI nr
Match: gi|703077714|ref|XP_010090662.1| (hypothetical protein L484_017468 [Morus notabilis])

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-08
Identity = 62/162 (38.27%), Postives = 79/162 (48.77%), Query Frame = 1 

Query: 10  SFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNKMYDEY------------YI-----E 69
           SF  P CLFIV N IV +++GE KL G++ S  N +YDEY            Y      E
Sbjct: 54  SFLNPKCLFIVFNVIVAFLVGESKLLGSQPSPANDIYDEYVARSRRFQGQHKYFSNLGEE 113

Query: 70  STMEMNMNPSENMKQLV-----------------EKVVEEKEEEEISS-----VEGDNSV 128
              E  +   +  K++V                 EK+ EE+EEEE         E +N++
Sbjct: 114 QKEERKLEVLDVSKEIVYEDKEIALEDKQDKHDHEKLEEEEEEEEEEDDDEEFKEAENNI 173

[Close]
BLAST of Lsi09G017420 vs. NCBI nr
Match: gi|702286800|ref|XP_010046674.1| (PREDICTED: uncharacterized protein LOC104435663 [Eucalyptus grandis])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 1 

Query: 10  SFFTPSCLFIVVNFIVVYILGEQKLAGAKSSSMNK--MYDEYYIESTMEMNMNP---SEN 69
           S  +P CLF+VVN IV ++LGE KL G  SS+M++  +Y+EY   S     ++    S++
Sbjct: 65  SLLSPKCLFLVVNAIVAFLLGESKLGGLCSSAMSRDEIYEEYVERSRTRKMLSAGPGSKS 124

Query: 70  MKQLVEK--VVEEKEEEEISSVEGDNSVDVSEKESEGDCELANEELNKRAEAFIARVNKQ 128
            ++L E+   V+E  +EE S  E +      E++ + +  +  EEL KR E FIARVN+Q
Sbjct: 125 SRELEEERMTVDEVRKEEESEKESEK----DERDGQEEDGIPAEELKKRVEEFIARVNRQ 184

The following BLAST results are available for this feature:
BLAST of Lsi09G017420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G017420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9L0_CUCSA4.9e-4477.10Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094140 PE=4 SV=1[more]
M5XMS0_PRUPE1.1e-1139.10Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027025mg PE=4 SV=1[more]
B9GMN7_POPTR3.0e-0937.58Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13520g PE=4 SV=1[more]
W9R7T7_9ROSA5.7e-0838.27Uncharacterized protein OS=Morus notabilis GN=L484_017468 PE=4 SV=1[more]
B9GZL9_POPTR9.7e-0834.73Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16660g PE=4 SV=2[more]
BLAST of Lsi09G017420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G017420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191241|gb|KGN46445.1|7.0e-4477.10hypothetical protein Csa_6G094140 [Cucumis sativus][more]
gi|596114551|ref|XP_007221609.1|1.6e-1139.10hypothetical protein PRUPE_ppa027025mg [Prunus persica][more]
gi|224053519|ref|XP_002297853.1|4.3e-0937.58hypothetical protein POPTR_0001s13520g [Populus trichocarpa][more]
gi|703077714|ref|XP_010090662.1|8.1e-0838.27hypothetical protein L484_017468 [Morus notabilis][more]
gi|702286800|ref|XP_010046674.1|1.1e-0740.00PREDICTED: uncharacterized protein LOC104435663 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025520DUF4408
IPR008480DUF761_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G017420.1Lsi09G017420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 106..129
score: 1.
IPR025520Domain of unknown function DUF4408PFAMPF14364DUF4408coord: 11..34
score: 6.
NoneNo IPR availableunknownCoilCoilcoord: 105..125
scor
NoneNo IPR availablePANTHERPTHR35762FAMILY NOT NAMEDcoord: 9..127
score: 2.6
NoneNo IPR availablePANTHERPTHR35762:SF2SUBFAMILY NOT NAMEDcoord: 9..127
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G017420Csa6G094140Cucumber (Chinese Long) v2culsiB402
Lsi09G017420CSPI06G07670Wild cucumber (PI 183967)cpilsiB404
Lsi09G017420Cla001507Watermelon (97103) v1lsiwmB041
Lsi09G017420MELO3C022330Melon (DHL92) v3.5.1lsimeB017
Lsi09G017420ClCG06G002000Watermelon (Charleston Gray)lsiwcgB029
Lsi09G017420MELO3C022330.2Melon (DHL92) v3.6.1lsimedB019
Lsi09G017420Cla97C06G111320Watermelon (97103) v2lsiwmbB026
Lsi09G017420Bhi12G002158Wax gourdlsiwgoB021
Lsi09G017420CsGy6G007730Cucumber (Gy14) v2cgyblsiB366
Lsi09G017420CsaV3_6G008060Cucumber (Chinese Long) v3cuclsiB424
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G017420Cucumber (Gy14) v1cgylsiB041
Lsi09G017420Cucumber (Gy14) v1cgylsiB562
Lsi09G017420Cucurbita maxima (Rimu)cmalsiB083
Lsi09G017420Cucurbita maxima (Rimu)cmalsiB224
Lsi09G017420Cucurbita maxima (Rimu)cmalsiB333
Lsi09G017420Cucurbita maxima (Rimu)cmalsiB812
Lsi09G017420Cucurbita moschata (Rifu)cmolsiB072
Lsi09G017420Cucurbita moschata (Rifu)cmolsiB212
Lsi09G017420Cucurbita moschata (Rifu)cmolsiB322
Lsi09G017420Cucurbita moschata (Rifu)cmolsiB798
Lsi09G017420Cucurbita pepo (Zucchini)cpelsiB249
Lsi09G017420Cucurbita pepo (Zucchini)cpelsiB312
Lsi09G017420Cucurbita pepo (Zucchini)cpelsiB485
Lsi09G017420Wild cucumber (PI 183967)cpilsiB001
Lsi09G017420Wild cucumber (PI 183967)cpilsiB158
Lsi09G017420Cucumber (Chinese Long) v2culsiB159
Lsi09G017420Melon (DHL92) v3.5.1lsimeB032
Lsi09G017420Watermelon (Charleston Gray)lsiwcgB019
Lsi09G017420Watermelon (Charleston Gray)lsiwcgB028
Lsi09G017420Watermelon (97103) v1lsiwmB039
Lsi09G017420Silver-seed gourdcarlsiB011
Lsi09G017420Silver-seed gourdcarlsiB631
Lsi09G017420Silver-seed gourdcarlsiB890
Lsi09G017420Wax gourdlsiwgoB054