ClCG06G002000 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G002000
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 2139207 .. 2139581 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATTACGCCGCCCTCGTTCTTCAGCCCGAATTGCTTGTTTGTTGTCGTTAATTTCATCGTCGTCTACATCGTTGGGGAACAAAAGCTCGCTTGGATGAACAAAATGTATGACGAATACTACATTGAGAGGACCATGGAGATGAACATGAATCCTTGTGATAATATGAAACAATTGGTTCAGAAAGTGGTGGAAGAAAAAGAAGCGGAAGAGATCGCCGTCGCCGACCGACGAAGCCACGGTGTCAATGGGAGTAAAAAAGAGAGTGAAGGCAATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTGTGGATTGTTACTAA

mRNA sequence

ATGGTCATTACGCCGCCCTCGTTCTTCAGCCCGAATTGCTTGTTTGTTGTCGTTAATTTCATCGTCGTCTACATCGTTGGGGAACAAAAGCTCGCTTGGATGAACAAAATGTATGACGAATACTACATTGAGAGGACCATGGAGATGAACATGAATCCTTGTGATAATATGAAACAATTGGTTCAGAAAGTGGTGGAAGAAAAAGAAGCGGAAGAGATCGCCGTCGCCGACCGACGAAGCCACGGTGTCAATGGGAGTAAAAAAGAGAGTGAAGGCAATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTGTGGATTGTTACTAA

Coding sequence (CDS)

ATGGTCATTACGCCGCCCTCGTTCTTCAGCCCGAATTGCTTGTTTGTTGTCGTTAATTTCATCGTCGTCTACATCGTTGGGGAACAAAAGCTCGCTTGGATGAACAAAATGTATGACGAATACTACATTGAGAGGACCATGGAGATGAACATGAATCCTTGTGATAATATGAAACAATTGGTTCAGAAAGTGGTGGAAGAAAAAGAAGCGGAAGAGATCGCCGTCGCCGACCGACGAAGCCACGGTGTCAATGGGAGTAAAAAAGAGAGTGAAGGCAATTGCGAGTTGGCCAATGAAGAGTTGAACAAAAGAGCAGAAGCCTTCATTGCAAGAGTTAACAAGCAAAGGAAGCTTGAAGCTGTGGATTGTTACTAA

Protein sequence

MVITPPSFFSPNCLFVVVNFIVVYIVGEQKLAWMNKMYDEYYIERTMEMNMNPCDNMKQLVQKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQRKLEAVDCY

Homology

[Close]

BLAST of ClCG06G002000 vs. TrEMBL
Match: A0A0A0K9L0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094140 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-42
Identity = 94/131 (71.76%), Postives = 111/131 (84.73%), Query Frame = 1


Query: 1   MVITPPSFFSPNCLFVVVNFIVVYIVGEQKL-----AWMNKMYDEYYIERTMEMN-MNPC 60
           MV TPPSFFSP+CLFV+VNFIVVYIVGEQKL     A+MN MYDEYYIERT+EM  +NPC
Sbjct: 59  MVATPPSFFSPSCLFVIVNFIVVYIVGEQKLTGAKSAFMNTMYDEYYIERTLEMKYLNPC 118

Query: 61  DNMKQLV-QKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVN 120
           +NMK+LV +K VEEKE E I+  +   +G+  S+KE+EG+C+LANEELNKRAEAFIARVN
Sbjct: 119 ENMKELVVEKFVEEKEEEGISPIED-DNGIGFSEKENEGDCKLANEELNKRAEAFIARVN 178

Query: 121 KQRKLEAVDCY 125
           KQRKLEAVDC+
Sbjct: 179 KQRKLEAVDCF 188

[Close]

BLAST of ClCG06G002000 vs. TrEMBL
Match: M5XMS0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027025mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-13
Identity = 57/157 (36.31%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 8   FFSPNCLFVVVNFIVVYIVGEQKLAWM-----NKMYDEYYIERTMEMNMNPC-------- 67
           FF+P CLF+VVNFIVV+++GE +L+       N+MY+EY +ERT  +             
Sbjct: 68  FFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEY-VERTRSLRAPTSMFQEKKEE 127

Query: 68  -----------DNMKQLVQKVVEEK--------------------EAEEIAVADRRSHGV 121
                      DN K L +K V+E                     E E+    +++   +
Sbjct: 128 RTELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKEEEKEKKEEEI 187

[Close]

BLAST of ClCG06G002000 vs. TrEMBL
Match: M0T8R0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 9   FSPNCLFVVVNFIVVYIVGEQKLAWMNKMYDEY--YIERTMEMNMNPCDNMKQLVQKVVE 68
           F P CLFVV N I++++VGE +L       D Y  Y++R   ++   C           E
Sbjct: 41  FGPKCLFVVSNIIIIFLVGESRLTRQPSRPDVYEEYVKRRRGLHGAACS----------E 100

Query: 69  EKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQRKLEA 121
            KEAE    A++   G  G  +E E    L  EELN+R E FIA+VN QRKLEA
Sbjct: 101 AKEAE----AEKGCDGQEGVGREREEEKGLPAEELNRRVEDFIAKVNMQRKLEA 140

[Close]

BLAST of ClCG06G002000 vs. TrEMBL
Match: B9GMN7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13520g PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 1


Query: 7   SFFSPNCLFVVVNFIVVYIVGEQKLAW-----MNKMYDEYYIERTM-------------- 66
           S+F P CLF++VN IVV++VGE +L       +  +YD+ Y+ER+               
Sbjct: 65  SYFGPKCLFILVNVIVVFLVGESRLVGSQSSPVGGIYDD-YVERSRSLRGVSTHQDKAED 124

Query: 67  ---EMNMNPCDNM--KQLVQKVVEEKEAEEIA-VADRRSH---GVNGSKKE-----SEGN 120
              E++ +   N+  K++V K  ++KE  E+    D+  H   GV   + E      E +
Sbjct: 125 SKPEIDQDQQTNIQDKEVVVKAEDDKEVTELTNEGDKDVHEEAGVEDDQHEEKDIIEEED 184

[Close]

BLAST of ClCG06G002000 vs. TrEMBL
Match: W9R7T7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017468 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 53/160 (33.12%), Postives = 69/160 (43.12%), Query Frame = 1


Query: 7   SFFSPNCLFVVVNFIVVYIVGEQKLAWM-----NKMYDEYYI-----------------E 66
           SF +P CLF+V N IV ++VGE KL        N +YDEY                   E
Sbjct: 54  SFLNPKCLFIVFNVIVAFLVGESKLLGSQPSPANDIYDEYVARSRRFQGQHKYFSNLGEE 113

Query: 67  RTMEMNMNPCDNMKQLV-----------------QKVVEEKEAEEIAVADRRSHGV--NG 121
           +  E  +   D  K++V                 +K+ EE+E EE    D        N 
Sbjct: 114 QKEERKLEVLDVSKEIVYEDKEIALEDKQDKHDHEKLEEEEEEEEEEDDDEEFKEAENNI 173

[Close]

BLAST of ClCG06G002000 vs. NCBI nr
Match: gi|700191241|gb|KGN46445.1| (hypothetical protein Csa_6G094140 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 6.2e-42
Identity = 94/131 (71.76%), Postives = 111/131 (84.73%), Query Frame = 1


Query: 1   MVITPPSFFSPNCLFVVVNFIVVYIVGEQKL-----AWMNKMYDEYYIERTMEMN-MNPC 60
           MV TPPSFFSP+CLFV+VNFIVVYIVGEQKL     A+MN MYDEYYIERT+EM  +NPC
Sbjct: 59  MVATPPSFFSPSCLFVIVNFIVVYIVGEQKLTGAKSAFMNTMYDEYYIERTLEMKYLNPC 118

Query: 61  DNMKQLV-QKVVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVN 120
           +NMK+LV +K VEEKE E I+  +   +G+  S+KE+EG+C+LANEELNKRAEAFIARVN
Sbjct: 119 ENMKELVVEKFVEEKEEEGISPIED-DNGIGFSEKENEGDCKLANEELNKRAEAFIARVN 178

Query: 121 KQRKLEAVDCY 125
           KQRKLEAVDC+
Sbjct: 179 KQRKLEAVDCF 188

[Close]

BLAST of ClCG06G002000 vs. NCBI nr
Match: gi|596114551|ref|XP_007221609.1| (hypothetical protein PRUPE_ppa027025mg [Prunus persica])

HSP 1 Score: 82.0 bits (201), Expect = 7.9e-13
Identity = 57/157 (36.31%), Postives = 76/157 (48.41%), Query Frame = 1


Query: 8   FFSPNCLFVVVNFIVVYIVGEQKLAWM-----NKMYDEYYIERTMEMNMNPC-------- 67
           FF+P CLF+VVNFIVV+++GE +L+       N+MY+EY +ERT  +             
Sbjct: 68  FFNPRCLFIVVNFIVVFLIGESRLSGRQSSPANEMYNEY-VERTRSLRAPTSMFQEKKEE 127

Query: 68  -----------DNMKQLVQKVVEEK--------------------EAEEIAVADRRSHGV 121
                      DN K L +K V+E                     E E+    +++   +
Sbjct: 128 RTELPILSQKEDNAKILEEKEVDETKEDKHEVDQDEDFKECEGTDEEEKEEEKEKKEEEI 187

[Close]

BLAST of ClCG06G002000 vs. NCBI nr
Match: gi|695036077|ref|XP_009405480.1| (PREDICTED: uncharacterized protein LOC103988623 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 9   FSPNCLFVVVNFIVVYIVGEQKLAWMNKMYDEY--YIERTMEMNMNPCDNMKQLVQKVVE 68
           F P CLFVV N I++++VGE +L       D Y  Y++R   ++   C           E
Sbjct: 60  FGPKCLFVVSNIIIIFLVGESRLTRQPSRPDVYEEYVKRRRGLHGAACS----------E 119

Query: 69  EKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQRKLEA 121
            KEAE    A++   G  G  +E E    L  EELN+R E FIA+VN QRKLEA
Sbjct: 120 AKEAE----AEKGCDGQEGVGREREEEKGLPAEELNRRVEDFIAKVNMQRKLEA 159

[Close]

BLAST of ClCG06G002000 vs. NCBI nr
Match: gi|672190068|ref|XP_008775146.1| (PREDICTED: uncharacterized protein LOC103695559 [Phoenix dactylifera])

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 1


Query: 9   FSPNCLFVVVNFIVVYIVGEQKLAWMN----KMYDEYYIERTMEMNMNPCDNMK-QLVQK 68
           F P CLFVV N IV++++GE K +  +     +Y+EY    T     +   + K    +K
Sbjct: 69  FGPKCLFVVCNLIVIFLIGESKFSKSSLTPPDIYEEYMNRNTNLRRRSTRKSKKGSACKK 128

Query: 69  VVEEKEAEEIAVADRRSHGVNGSKKESEGNCELANEELNKRAEAFIARVNKQRKLEA 121
             +E+E  E          V G  +E +G  E   +ELN+R E FIARVNKQR+LEA
Sbjct: 129 AFDEEEEGEEEKGGGGWAQVEGGYEEVDGEGEKGLDELNRRVEDFIARVNKQRRLEA 185

[Close]

BLAST of ClCG06G002000 vs. NCBI nr
Match: gi|658035066|ref|XP_008353051.1| (PREDICTED: myb-like protein X [Malus domestica])

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 54/158 (34.18%), Postives = 75/158 (47.47%), Query Frame = 1


Query: 8   FFSPNCLFVVVNFIVVYIVGEQKLAW------MNKMYDEYY-----------------IE 67
           F +P CLF+VVNFIVV+++GE +L+       + +MY+EY                   E
Sbjct: 72  FINPKCLFIVVNFIVVFLIGESRLSSGKQSSPVTEMYNEYVERSRNLRRPLSTFREKKEE 131

Query: 68  RTMEMNMNPCD--NMKQLVQKVVEE----------------KEAEEIAVADRRSHGVNGS 121
           RT+   +NP +  N + +  K V+E                KE  E    ++    + G 
Sbjct: 132 RTLPEMLNPINKGNAESIEDKEVDEGKQDDKHDHDHDEEDFKECGENDEEEKXEEKMEGK 191

The following BLAST results are available for this feature:

BLAST of ClCG06G002000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9L0_CUCSA	4.3e-42	71.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094140 PE=4 SV=1	[more]
M5XMS0_PRUPE	5.5e-13	36.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa027025mg PE=4 SV=1	[more]
M0T8R0_MUSAM	1.3e-09	40.35	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
B9GMN7_POPTR	1.8e-08	35.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13520g PE=4 SV=1	[more]
W9R7T7_9ROSA	1.5e-07	33.13	Uncharacterized protein OS=Morus notabilis GN=L484_017468 PE=4 SV=1	[more]

BLAST of ClCG06G002000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191241\|gb\|KGN46445.1\|	6.2e-42	71.76	hypothetical protein Csa_6G094140 [Cucumis sativus]	[more]
gi\|596114551\|ref\|XP_007221609.1\|	7.9e-13	36.31	hypothetical protein PRUPE_ppa027025mg [Prunus persica]	[more]
gi\|695036077\|ref\|XP_009405480.1\|	1.8e-09	40.35	PREDICTED: uncharacterized protein LOC103988623 [Musa acuminata subsp. malaccens...	[more]
gi\|672190068\|ref\|XP_008775146.1\|	3.1e-09	37.61	PREDICTED: uncharacterized protein LOC103695559 [Phoenix dactylifera]	[more]
gi\|658035066\|ref\|XP_008353051.1\|	4.1e-09	34.18	PREDICTED: myb-like protein X [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln
IPR025520	DUF4408

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G002000.1	ClCG06G002000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 99..119 score: 4.
IPR025520	Domain of unknown function DUF4408	PFAM	PF14364	DUF4408	coord: 9..31 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 98..118 scor
None	No IPR available	PANTHER	PTHR35762	FAMILY NOT NAMED	coord: 6..121 score: 3.9
None	No IPR available	PANTHER	PTHR35762:SF2	SUBFAMILY NOT NAMED	coord: 6..121 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G002000	Csa6G094140	Cucumber (Chinese Long) v2	cuwcgB476
ClCG06G002000	MELO3C022330	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G002000	Cla001507	Watermelon (97103) v1	wcgwmB345
ClCG06G002000	Cla97C06G111320	Watermelon (97103) v2	wcgwmbB273
ClCG06G002000	Bhi12G002158	Wax gourd	wcgwgoB491
ClCG06G002000	CSPI06G07670	Wild cucumber (PI 183967)	cpiwcgB503
ClCG06G002000	Lsi09G017420	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G002000	CsGy6G007730	Cucumber (Gy14) v2	cgybwcgB438
ClCG06G002000	MELO3C022330.2	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G002000	CsaV3_6G008060	Cucumber (Chinese Long) v3	cucwcgB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G002000	Silver-seed gourd	carwcgB0013
ClCG06G002000	Silver-seed gourd	carwcgB0669
ClCG06G002000	Silver-seed gourd	carwcgB0956
ClCG06G002000	Wax gourd	wcgwgoB532
ClCG06G002000	Watermelon (Charleston Gray)	wcgwcgB163
ClCG06G002000	Watermelon (Charleston Gray)	wcgwcgB173
ClCG06G002000	Cucumber (Gy14) v1	cgywcgB595
ClCG06G002000	Cucurbita maxima (Rimu)	cmawcgB322
ClCG06G002000	Cucurbita maxima (Rimu)	cmawcgB805
ClCG06G002000	Cucurbita moschata (Rifu)	cmowcgB318
ClCG06G002000	Cucurbita moschata (Rifu)	cmowcgB800
ClCG06G002000	Wild cucumber (PI 183967)	cpiwcgB254
ClCG06G002000	Cucumber (Chinese Long) v2	cuwcgB244
ClCG06G002000	Melon (DHL92) v3.5.1	mewcgB444
ClCG06G002000	Cucurbita pepo (Zucchini)	cpewcgB298
ClCG06G002000	Cucurbita pepo (Zucchini)	cpewcgB402
ClCG06G002000	Cucurbita pepo (Zucchini)	cpewcgB564
ClCG06G002000	Cucurbita pepo (Zucchini)	cpewcgB789
ClCG06G002000	Cucumber (Gy14) v2	cgybwcgB229