Lsi09G017330 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGTAACGGAGGCCAAAAACAAGGACAAAGTTGGTCTTTGTATTGTCGTGTTTGTATGCCCTTATATTTTTTCATTTTTTCTTAATCAAAGTTGGTCTTTTATTAATATATATATATATATTATATACCGCTACATAGTTCATTAGTTCTTGAAACTGTACTATGTTGAACCTGTGCATTGTGGGGCTCCTAAACCTGATATAGGACATCGGAGTGCATTGGGGCTAGCTTGGGTAGTTCTTTTTCTTTTCATTTTTTTTCACCATTGCATTTGTGATCTTGAATTTGTGGAAGAAGGAGATAGATATTTAACTATTGGCTAGTATTAATTACGTGTTTACTGTAATTGATTTCAATGGTCCATCTATCTATTTACGTGTGTACTATCATCCGTTCCCTCTGAAGAAAATTTGTTTGTCTGACTTCTGCGTCTCTATTTCTTTTGATGATTATAGCTGAGGAGTGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTAGTTTCACAAGTATTTTACTAATTTTATACATGGGCAAAAGTAAAATTTTATAATTTGACATAATTTATAATGTTTATATCTGCTTTAGACCTATGTAATGTTTTAAGTATTTATCAGGTGGGAACTGTAGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTGGCAGACGAACTGCTATCCGACCAGGCTCTCACTCAGTACAGGTTTGATCTTTATCATGTCCTTTTGCTATTGCAAAATTTTCCAGTGAAGGAAAAGAAATGGGGAAGTATATGGCTACCCATTTTGAATTCTACAAATTATCCATTCCTGGGCTATGGCTGCTTCCTAAGAATCACTTGCATGTGGAACGTCATTTTTCTATGCATGTTAAGAAGTTAAACATAGATCTGAAAAATGTAAAGCGTATTCTAATGCGACAACGGTGGAGCATGAACCGACTCTCATCTTATCATTTTTGTATCCATCAAAACAGATTGTAGTGATAATGTCTTCTTAACCAGTTTTTTAATCGACTCTCACGTCATATTTCGACGATGATTTTGTTTCAAGTCGGAATGTAATAATTCTGGTGCATTATCAAGCATTTTGTTGTGCTTATGTTCTTTCAAAAATCTCTTGCAGAAAACGCAAAGTTCAAGAAATTGAAGAGCATAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAGTTAAGTTACCTCAAAATTTTGACGTGTAAGCCAGATAAACACTGCAGGATCAAATCAAGTTTGGTGGGTGGAGTTTGTGACCCAATGTGATACAAAAGTATGAGAATTCATCATTGGTACTGCCGGCTCCAACTTGATTTATGGGCTAGGTGAAGTCCTTCAAATATTTCCCCCTATTGAATTGATGTTTTGTATTAGGAGCAACGTTCTTCAGGTTATTTTATTCAAACCTGTAACTGAGAAATTACGCTTATTTATCGGAGTATAAAGACATATTCTTGGAGAAAAAAGGTTAGGAAGAAAGTGCTTTTAGGGGAACAGAGTGCTGCCCATAAACCATGAATACGAACATAGCTTTTTATGTGTTTAAAAGAGCTTTTAAAGGAATTTTATAGAGTTGAAAAGAAAAAAAGTTAAATGGTGACATTTTGATTATCAGATGGTTTGATTGGTGATGACTCTTGATTTTAAGAGTTATTCGGTCCAACTAAGTTTCAGTCGTTGTCATTATGGATGGATTTGCATGGTAGCGTTTAAAAGAAAGAGAAGTATAAATTTGTTAAAAGCTTCATTATGAGGGGATAATCGTTGTATAACCCAAAACATTGGCTGAAATGATTTTTGACTTGCTTTTCTAAATTTTAAGATTTTTTTTTCCCTTTTGTTTACGTCATATCCTATAACTATTATTGTTGACATGTATTGGCCAAGTATAATATAAAATCATGAATTTATAGAGGAAGAGTTGTGATTAATATAATAGAAATGATACAAAAGTGGAGTCCACAAAACTCACGAGTTTATAGGGGAAGAGTTAAGTTGTGATGAAAATAATAGAAGCGATATAAAAGTGGCGTCCAATCGTGGAAACATTAATTACAAAAAAA ATGGAAGTGGGAACTGTAGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTGGCAGACGAACTGCTATCCGACCAGGCTCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATTGAAGAGCATAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAGTTAAGTTACCTCAAAATTTTGACGTGTAAGCCAGATAAACACTGCAGGATCAAATCAAGTTTGGTGGGTGGAGTTTGTGACCCAATGTGATACAAAAGTATGAGAATTCATCATTGGTACTGCCGGCTCCAACTTGATTTATGGGCTAGGTGAAGTCCTTCAAATATTTCCCCCTATTGAATTGATGTTTTGTATTAGGAGCAACGTTCTTCAGGTTATTTTATTCAAACCTGTAACTGAGAAATTACGCTTATTTATCGGAGTATAAAGACATATTCTTGGAGAAAAAAGGTTAGGAAGAAAGTGCTTTTAGGGGAACAGAGTGCTGCCCATAAACCATGAATACGAACATAGCTTTTTATGTGTTTAAAAGAGCTTTTAAAGGAATTTTATAGAGTTGAAAAGAAAAAAAGTTAAATGGTGACATTTTGATTATCAGATGGTTTGATTGGTGATGACTCTTGATTTTAAGAGTTATTCGGTCCAACTAAGTTTCAGTCGTTGTCATTATGGATGGATTTGCATGGTAGCGTTTAAAAGAAAGAGAAGTATAAATTTGTTAAAAGCTTCATTATGAGGGGATAATCGTTGTATAACCCAAAACATTGGCTGAAATGATTTTTGACTTGCTTTTCTAAATTTTAAGATTTTTTTTTCCCTTTTGTTTACGTCATATCCTATAACTATTATTGTTGACATGTATTGGCCAAGTATAATATAAAATCATGAATTTATAGAGGAAGAGTTGTGATTAATATAATAGAAATGATACAAAAGTGGAGTCCACAAAACTCACGAGTTTATAGGGGAAGAGTTAAGTTGTGATGAAAATAATAGAAGCGATATAAAAGTGGCGTCCAATCGTGGAAACATTAATTACAAAAAAA ATGGAAGTGGGAACTGTAGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTGGCAGACGAACTGCTATCCGACCAGGCTCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATTGAAGAGCATAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAG MEVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWKIRGHHSRKRAKDRRN
BLAST of Lsi09G017330 vs. TrEMBL
Match: A0A0A0K9M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094730 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 8.8e-30 Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1
BLAST of Lsi09G017330 vs. TrEMBL
Match: V7AQG7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G140500g PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 5.5e-24 Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1
BLAST of Lsi09G017330 vs. TrEMBL
Match: I1LGG7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G024900 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23 Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1
BLAST of Lsi09G017330 vs. TrEMBL
Match: I1JA57_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G218300 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23 Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1
BLAST of Lsi09G017330 vs. TrEMBL
Match: V7C847_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G045400g PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 1.6e-23 Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
BLAST of Lsi09G017330 vs. TAIR10
Match: AT5G30495.2 (AT5G30495.2 Fcf2 pre-rRNA processing protein) HSP 1 Score: 77.0 bits (188), Expect = 5.5e-15 Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 1
BLAST of Lsi09G017330 vs. TAIR10
Match: AT1G54770.1 (AT1G54770.1 Fcf2 pre-rRNA processing protein) HSP 1 Score: 74.3 bits (181), Expect = 3.6e-14 Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1
BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|778711861|ref|XP_011656806.1| (PREDICTED: rRNA-processing protein fcf2 [Cucumis sativus]) HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29 Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1
BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|659119814|ref|XP_008459856.1| (PREDICTED: rRNA-processing protein fcf2 [Cucumis melo]) HSP 1 Score: 134.4 bits (337), Expect = 8.2e-29 Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1
BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|593266786|ref|XP_007135571.1| (hypothetical protein PHAVU_010G140500g [Phaseolus vulgaris]) HSP 1 Score: 117.9 bits (294), Expect = 8.0e-24 Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1
BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|356539758|ref|XP_003538361.1| (PREDICTED: rRNA-processing protein fcf2-like [Glycine max]) HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23 Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1
BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|356497226|ref|XP_003517463.1| (PREDICTED: rRNA-processing protein fcf2-like [Glycine max]) HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23 Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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