Lsi09G017330 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G017330
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionFcf2 pre-rRNA processing protein
Locationchr09 : 25980184 .. 25982381 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTAACGGAGGCCAAAAACAAGGACAAAGTTGGTCTTTGTATTGTCGTGTTTGTATGCCCTTATATTTTTTCATTTTTTCTTAATCAAAGTTGGTCTTTTATTAATATATATATATATATTATATACCGCTACATAGTTCATTAGTTCTTGAAACTGTACTATGTTGAACCTGTGCATTGTGGGGCTCCTAAACCTGATATAGGACATCGGAGTGCATTGGGGCTAGCTTGGGTAGTTCTTTTTCTTTTCATTTTTTTTCACCATTGCATTTGTGATCTTGAATTTGTGGAAGAAGGAGATAGATATTTAACTATTGGCTAGTATTAATTACGTGTTTACTGTAATTGATTTCAATGGTCCATCTATCTATTTACGTGTGTACTATCATCCGTTCCCTCTGAAGAAAATTTGTTTGTCTGACTTCTGCGTCTCTATTTCTTTTGATGATTATAGCTGAGGAGTGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTAGTTTCACAAGTATTTTACTAATTTTATACATGGGCAAAAGTAAAATTTTATAATTTGACATAATTTATAATGTTTATATCTGCTTTAGACCTATGTAATGTTTTAAGTATTTATCAGGTGGGAACTGTAGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTGGCAGACGAACTGCTATCCGACCAGGCTCTCACTCAGTACAGGTTTGATCTTTATCATGTCCTTTTGCTATTGCAAAATTTTCCAGTGAAGGAAAAGAAATGGGGAAGTATATGGCTACCCATTTTGAATTCTACAAATTATCCATTCCTGGGCTATGGCTGCTTCCTAAGAATCACTTGCATGTGGAACGTCATTTTTCTATGCATGTTAAGAAGTTAAACATAGATCTGAAAAATGTAAAGCGTATTCTAATGCGACAACGGTGGAGCATGAACCGACTCTCATCTTATCATTTTTGTATCCATCAAAACAGATTGTAGTGATAATGTCTTCTTAACCAGTTTTTTAATCGACTCTCACGTCATATTTCGACGATGATTTTGTTTCAAGTCGGAATGTAATAATTCTGGTGCATTATCAAGCATTTTGTTGTGCTTATGTTCTTTCAAAAATCTCTTGCAGAAAACGCAAAGTTCAAGAAATTGAAGAGCATAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAGTTAAGTTACCTCAAAATTTTGACGTGTAAGCCAGATAAACACTGCAGGATCAAATCAAGTTTGGTGGGTGGAGTTTGTGACCCAATGTGATACAAAAGTATGAGAATTCATCATTGGTACTGCCGGCTCCAACTTGATTTATGGGCTAGGTGAAGTCCTTCAAATATTTCCCCCTATTGAATTGATGTTTTGTATTAGGAGCAACGTTCTTCAGGTTATTTTATTCAAACCTGTAACTGAGAAATTACGCTTATTTATCGGAGTATAAAGACATATTCTTGGAGAAAAAAGGTTAGGAAGAAAGTGCTTTTAGGGGAACAGAGTGCTGCCCATAAACCATGAATACGAACATAGCTTTTTATGTGTTTAAAAGAGCTTTTAAAGGAATTTTATAGAGTTGAAAAGAAAAAAAGTTAAATGGTGACATTTTGATTATCAGATGGTTTGATTGGTGATGACTCTTGATTTTAAGAGTTATTCGGTCCAACTAAGTTTCAGTCGTTGTCATTATGGATGGATTTGCATGGTAGCGTTTAAAAGAAAGAGAAGTATAAATTTGTTAAAAGCTTCATTATGAGGGGATAATCGTTGTATAACCCAAAACATTGGCTGAAATGATTTTTGACTTGCTTTTCTAAATTTTAAGATTTTTTTTTCCCTTTTGTTTACGTCATATCCTATAACTATTATTGTTGACATGTATTGGCCAAGTATAATATAAAATCATGAATTTATAGAGGAAGAGTTGTGATTAATATAATAGAAATGATACAAAAGTGGAGTCCACAAAACTCACGAGTTTATAGGGGAAGAGTTAAGTTGTGATGAAAATAATAGAAGCGATATAAAAGTGGCGTCCAATCGTGGAAACATTAATTACAAAAAAA

mRNA sequence

ATGGAAGTGGGAACTGTAGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTGGCAGACGAACTGCTATCCGACCAGGCTCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATTGAAGAGCATAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAGTTAAGTTACCTCAAAATTTTGACGTGTAAGCCAGATAAACACTGCAGGATCAAATCAAGTTTGGTGGGTGGAGTTTGTGACCCAATGTGATACAAAAGTATGAGAATTCATCATTGGTACTGCCGGCTCCAACTTGATTTATGGGCTAGGTGAAGTCCTTCAAATATTTCCCCCTATTGAATTGATGTTTTGTATTAGGAGCAACGTTCTTCAGGTTATTTTATTCAAACCTGTAACTGAGAAATTACGCTTATTTATCGGAGTATAAAGACATATTCTTGGAGAAAAAAGGTTAGGAAGAAAGTGCTTTTAGGGGAACAGAGTGCTGCCCATAAACCATGAATACGAACATAGCTTTTTATGTGTTTAAAAGAGCTTTTAAAGGAATTTTATAGAGTTGAAAAGAAAAAAAGTTAAATGGTGACATTTTGATTATCAGATGGTTTGATTGGTGATGACTCTTGATTTTAAGAGTTATTCGGTCCAACTAAGTTTCAGTCGTTGTCATTATGGATGGATTTGCATGGTAGCGTTTAAAAGAAAGAGAAGTATAAATTTGTTAAAAGCTTCATTATGAGGGGATAATCGTTGTATAACCCAAAACATTGGCTGAAATGATTTTTGACTTGCTTTTCTAAATTTTAAGATTTTTTTTTCCCTTTTGTTTACGTCATATCCTATAACTATTATTGTTGACATGTATTGGCCAAGTATAATATAAAATCATGAATTTATAGAGGAAGAGTTGTGATTAATATAATAGAAATGATACAAAAGTGGAGTCCACAAAACTCACGAGTTTATAGGGGAAGAGTTAAGTTGTGATGAAAATAATAGAAGCGATATAAAAGTGGCGTCCAATCGTGGAAACATTAATTACAAAAAAA

Coding sequence (CDS)

ATGGAAGTGGGAACTGTAGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTGGCAGACGAACTGCTATCCGACCAGGCTCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATTGAAGAGCATAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAG

Protein sequence

MEVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWKIRGHHSRKRAKDRRN
BLAST of Lsi09G017330 vs. TrEMBL
Match: A0A0A0K9M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094730 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.8e-30
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVVESSLDFF+GRLTKKERKATLADELLSDQALTQYRKRKV+EIEE NRP GNDKWK
Sbjct: 123 QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDKWK 182

Query: 62  IRGHHSRKRAKDRRN 77
           IRGHHSRKRAKDRRN
Sbjct: 183 IRGHHSRKRAKDRRN 197

BLAST of Lsi09G017330 vs. TrEMBL
Match: V7AQG7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G140500g PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-24
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LD+F+GRLTKKERKATLADELLSDQ L  YRKRKVQEIEEHNRP GN++WK
Sbjct: 124 QVGTVVDSPLDYFSGRLTKKERKATLADELLSDQKLAAYRKRKVQEIEEHNRPGGNERWK 183

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 184 IKGSNSRKRAKERR 197

BLAST of Lsi09G017330 vs. TrEMBL
Match: I1LGG7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G024900 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LDFF+GRLTKKERKATLADELLSDQ L  YRKRKV+EIEE NRPAGN+KWK
Sbjct: 123 QVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWK 182

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 183 IKGSNSRKRAKERR 196

BLAST of Lsi09G017330 vs. TrEMBL
Match: I1JA57_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G218300 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-23
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LDFF+GRLTKKERKATLADELLSDQ L  YRKRKV+EIEE NRPAGN+KWK
Sbjct: 124 QVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWK 183

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 184 IKGSNSRKRAKERR 197

BLAST of Lsi09G017330 vs. TrEMBL
Match: V7C847_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G045400g PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-23
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LDFF+GRLTKKERKATLADELLSDQ L  YRKRKVQEIEE NRP GN+KWK
Sbjct: 124 QVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAVYRKRKVQEIEEQNRPGGNEKWK 183

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 184 IKGSNSRKRAKERR 197

BLAST of Lsi09G017330 vs. TAIR10
Match: AT5G30495.2 (AT5G30495.2 Fcf2 pre-rRNA processing protein)

HSP 1 Score: 77.0 bits (188), Expect = 5.5e-15
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           ++GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIEE +R   N KWK
Sbjct: 124 QIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVTNKKWK 183

Query: 62  IRGHHSRKRAKDRRN 77
            +G+ +  + K RRN
Sbjct: 184 KKGNQTTNK-KQRRN 196

BLAST of Lsi09G017330 vs. TAIR10
Match: AT1G54770.1 (AT1G54770.1 Fcf2 pre-rRNA processing protein)

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-14
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           ++GTV+E + +F+ GRLTKK RKATLADEL+SD     YRKRKV+EIEE +R   N KW 
Sbjct: 117 QIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAVTNKKWN 176

Query: 62  IRGHHSRKRAKDRRN 77
            +G+ S K  K RRN
Sbjct: 177 KKGNQS-KNTKPRRN 189

BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|778711861|ref|XP_011656806.1| (PREDICTED: rRNA-processing protein fcf2 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVVESSLDFF+GRLTKKERKATLADELLSDQALTQYRKRKV+EIEE NRP GNDKWK
Sbjct: 123 QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDKWK 182

Query: 62  IRGHHSRKRAKDRRN 77
           IRGHHSRKRAKDRRN
Sbjct: 183 IRGHHSRKRAKDRRN 197

BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|659119814|ref|XP_008459856.1| (PREDICTED: rRNA-processing protein fcf2 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 8.2e-29
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVVESSLDFF+GRLTKKERKATLADELLSDQALTQYRKRKV+EIEE NRP GNDKWK
Sbjct: 123 QVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDKWK 182

Query: 62  IRGHHSRKRAKDRRN 77
           IRG+HSRKRAKDRRN
Sbjct: 183 IRGNHSRKRAKDRRN 197

BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|593266786|ref|XP_007135571.1| (hypothetical protein PHAVU_010G140500g [Phaseolus vulgaris])

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-24
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LD+F+GRLTKKERKATLADELLSDQ L  YRKRKVQEIEEHNRP GN++WK
Sbjct: 124 QVGTVVDSPLDYFSGRLTKKERKATLADELLSDQKLAAYRKRKVQEIEEHNRPGGNERWK 183

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 184 IKGSNSRKRAKERR 197

BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|356539758|ref|XP_003538361.1| (PREDICTED: rRNA-processing protein fcf2-like [Glycine max])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LDFF+GRLTKKERKATLADELLSDQ L  YRKRKV+EIEE NRPAGN+KWK
Sbjct: 123 QVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWK 182

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 183 IKGSNSRKRAKERR 196

BLAST of Lsi09G017330 vs. NCBI nr
Match: gi|356497226|ref|XP_003517463.1| (PREDICTED: rRNA-processing protein fcf2-like [Glycine max])

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-23
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1

Query: 2   EVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEHNRPAGNDKWK 61
           +VGTVV+S LDFF+GRLTKKERKATLADELLSDQ L  YRKRKV+EIEE NRPAGN+KWK
Sbjct: 124 QVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWK 183

Query: 62  IRGHHSRKRAKDRR 76
           I+G +SRKRAK+RR
Sbjct: 184 IKGSNSRKRAKERR 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9M7_CUCSA8.8e-3093.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094730 PE=4 SV=1[more]
V7AQG7_PHAVU5.5e-2479.73Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G140500g PE=4 SV=1[more]
I1LGG7_SOYBN1.2e-2381.08Uncharacterized protein OS=Glycine max GN=GLYMA_11G024900 PE=4 SV=1[more]
I1JA57_SOYBN1.2e-2381.08Uncharacterized protein OS=Glycine max GN=GLYMA_01G218300 PE=4 SV=1[more]
V7C847_PHAVU1.6e-2381.08Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G045400g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G30495.25.5e-1557.33 Fcf2 pre-rRNA processing protein[more]
AT1G54770.13.6e-1457.33 Fcf2 pre-rRNA processing protein[more]
Match NameE-valueIdentityDescription
gi|778711861|ref|XP_011656806.1|1.3e-2993.33PREDICTED: rRNA-processing protein fcf2 [Cucumis sativus][more]
gi|659119814|ref|XP_008459856.1|8.2e-2992.00PREDICTED: rRNA-processing protein fcf2 [Cucumis melo][more]
gi|593266786|ref|XP_007135571.1|8.0e-2479.73hypothetical protein PHAVU_010G140500g [Phaseolus vulgaris][more]
gi|356539758|ref|XP_003538361.1|1.8e-2381.08PREDICTED: rRNA-processing protein fcf2-like [Glycine max][more]
gi|356497226|ref|XP_003517463.1|1.8e-2381.08PREDICTED: rRNA-processing protein fcf2-like [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014810Fcf2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010155 regulation of proton transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G017330.1Lsi09G017330.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014810Fcf2 pre-rRNA processingPFAMPF08698Fcf2coord: 2..44
score: 1.0
NoneNo IPR availablePANTHERPTHR21686UNCHARACTERIZEDcoord: 1..72
score: 2.5
NoneNo IPR availablePANTHERPTHR21686:SF12DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 2coord: 1..72
score: 2.5

The following gene(s) are paralogous to this gene:

None