ClCG06G002080 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G002080
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Fcf2 pre-rRNA processing protein
Location	CG_Chr06 : 2217885 .. 2223244 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCGCAAACCCTCGTGAAAAGAGGGGGGATAGCCTTCTCGAGTCTGATTTTCGCACAAACCCTCACTCTCTCGCTGTGTCCTCCTCAATCTTCTGCAGTCTTCCCCAATCTCACGATCTTGCACTGCGCAAGACGGGTTAAGCCTTGGGCTTGTTCGCTTGGAGGTCGTCTTCGTGGGCTTGCCGTGTTAAGCCGCCGTCCACCGTTCGTTGTGGAAGTCGTGCGTAGCAGAATTTTAATAAATATTTTGATTTGCTCGAAACCGAAAACCGAACTGACCAGGAACTAATTGATCTTTTTTTTCTTTTATTTGGTGTAGATGTCAGAAAGAAAGCCTATCATTGGCCTCTCTTGGGAGCCAAAGCTGCCCGCCTCCTCATTGGGGGTCAGAACTAAAACTTGTGATAAATCTAACAGTCAAGCAGAAAACAGTCTTGTTTGGAAAACCAACTCAGAGCTTGTTGATGGGCTGTTTGTTCCACCAAACAAACCAAAAAAATTGAACAAGTTATTGAGAAAGCAAGTCAGCGACACGGCTGGGAGGAATTGGTATATGTTATTTTCTATAAAATTCAGCAGTTTTATTGTTGATTTCTGGAAAAAAAAAAAAAAAAACCGACAAAAGCGTTTTTTCTCCTTTCCCATTGTTCTAATTTTATTTGAATGCTGATTAACCATAGTAGTTGATGATATTCTAAATTATAATACCCATACGCTTGTTATTGTAACTAGGTTTGACATGCCAGCACAAACCGTGACCCCTGAAGTGGAAAAAGATTTGCGCTTGTTGAAGGTGAGCCTACATCTGATGTTCCATTTTATTCTTTATCAGTTTTCTTTTCCACTCATATAGCAAGCTGGTAACTTTGACCATGTATCAAGAGTTGTAACTTTTAATCATGCTACAGAGCTCTTCAGTTGTGAGATGGGTATATCTTGCGTGTTTCCTGTGAATATCTTGGGTTCCAAACCTTCAAGAGTCAACGTTTTTCTAGAGCCAGGACACTGAGTATATATGAATCTATGTTTGGTATGATGGACGTAACGACTAATTAGAATGTCACTTTTCTACGTATTTGATTTCTTAGGGTCGTATAGGGAAACAGTAATACATTTTGAGGCCACATGAAACACATATTCTAGTACCATTCATTCGTATTTGGAGCCCTAACCCATTGAGGGCCTTTCTTGTAGTTATTTCTTTCATTACTTATTAGATCATTCTTCTTCTAGGGAGCTCATGTTCTTGGTTCTTCGGATGGTGGAAATCTCAAAAAAAGATGACGTTCTTTGTCTATTAAGTTATCCATGGAAGAATCAATACCTTGGATAGGCTCTTGAGGAAGATGCTTTTGGTTGGGCCTTTTGAAAGACATGTTATTAGGGGTATTTTAGCAAGTAGTTAGAGATTTTCTTAGGGTATTTGGTTATAAATAGAGAGAGGATGAAGGGGGGAATAATTAGACATTAATTTGGTGATTGAATTAGAGTTTGATAGAGATCTCAATGGGGAAGGTCCAAGTAGGGGTGTGCAAAAACCGAAAAAAACCGCAAAACTGTGAACCAAAACATGAATCAGGTTGGTTCGGTTCAAGAAATGAAACCGATGAAAATTGGTTTTCAATGGTTCTTCTTCGTTGTGAATCGATGACATCGATTTGGTTCATGGTTCAGCCGAAAACCAGACCGAACCGAACCGTGCACACCCCTAGGTCCAAGTACCTTAAATTGCTTGGTTATTTTATAAGTTTTCATCCTTTACATTAACATTGATTGTGTAATGCTTCCTACCAAATTGGTATAGAGTTGTTTCGGTTCTGGCTGTGAAGTTTGATGAAAGTTTGTGTGAATAAATAATGAAGAGTGTATGTGAAGGGTTGAAGGAATTGATAGATTGATGGCAAAAGCACATGAAGTCGATATTCCAATCTTTTTAAGATACAACTCAAAAGATTGAAGAGAAAATTGAATTAGCAAAAGGAAGAAAAGGAATCAAGAGTCTTATCTAGCCAGGGTGGAGTTGAAAGGGAAATTGATCAAGCAAAGAAGGAGAAATAAGAGCTGGTCGAAGAGGAAAGTCCTCATATAGACGCGAGGAAAAATAGAAAAAAAAGTAAGAATTTGTCGAGGAAGAATGAGGTTGTACGAAAGTGAAAGAAAGCACTCAGGAAGGATGATGGGTAATTTGAAAGGGTGCCTGGAAAAACATCGAGGAAGAAGGGTTGAGAAAGTCAGTTGCTAATTTTGCCAACATTTGAAAACATACGAGGGGTGTGAAATGCGTTTAAGGTGAAGGAGGCGAATTATCTAAGGGAGATATGTCATTGTCAGCAAGGAGCATTGTTGGCAAAATACGTCCGAAGGGAGATTATTGGCCATCGTTGTTTTGAAGGTTGGGGATGAAAAACTGGAAGCGATGTTGGCACCATGGTTGTAAGGAGGCAACAGAGAGATCGAGGGTGTACAATAAAGACGAAGATGTAAATAAAGAAGAAAGGTACCTACAGGCCTTCGCAGGCGGCAAGTGAAGGCATGCACGTAGATGAAAACTTGGGGAGGCACCAATGCAAGTTGGGGAAGATGGGCGTGTGCATATGAGGTTTGTTATCGATTGTCATGTGCATTGTGAGAATAAAAACGATCATGGAAGTAATCGAGCCCTAACTACTGCATTTCATTAAATGAATTGACGAGACTCACTTGTTTGGGTTGGATTCAAATAAGATTAGTAAGGGCCATTTCAAGTCAAAGGCAAAATTAGGATTTGTTATATAAGATTGAGTTTTGGGCTGGATTTGTCTATATTTTTAACCTTCAACCTGACTAGGGTTGGCATGGGTCTACACACGAAGGAATCCTAGTCGCTATAGTTCTCTTCCTTTATTGTTCACCTGTGTTGATGCCACATTCACTTACTAATGTATTGGCTTGACAACATCTATGTTCTTGCTGCCAACTCTCGATGCCTGTATTGTCGTTGTTGTTTACCACCCACACTTCACCATTTGTTGATTGCCAACACACAAGCTTGAGTTTCAAGTTTTTGAAGGGTGGCTTGGCTCTATGGATGCATTTTTTTTTTCCAAAAAAACTTCAGTTTGCTCTAAATCTAATTTTGGTTTTTGTTTTGTCTAACCACTCCTTGAGGATAAGGTGTGTTTAAGGGGCGGGTAATGATAGTAATGTCATTAAGGGTATATTAGTAATTAGATAAAGAATTTGTTAGGGTATTTTGTTATAAATAGAGAGGATGATGAAGAAAGGGGAAGTTAGACATTGTTTTGGTTAATGAATTAGAGTTTGAAATAGATATTTGGGAGGATCCAAGTACCTCGAATTATTTAGCTACCTTGTAAGTTTTCATTCTAGACGCCTCATTATAGTTGGATTTTGTACTAGTTCCTACCACCTCGTGTTGCATCATTTGTTAGAGGGTGGAGGAAGATTTGAATAATTAAGTTTGGAGTTGTGATTATGCTCAGTTGGTATGGAATTACTTCAGGGGTAGGGAAATTTTTTATGGCAAGCCAGGGTGTGTGCTTTATTGTGGGATTTTTTATCGGAAAGAATGATAGGATTTTGAGAGGGATTGATATTTGATCCCTTGTGAGATTTAATGTTTCTCCTAGGTGGCGGTGACAAGTTCCTTTTGTAATTATTTGCTTGGTCTTATTGTATTTGATTGGAGTCCTTTGCTATAGGGTTGCTCCTTCTTGTGGCCTTCGTGTGTGTATGAGTTTGTATGCCCTTGTATTTTTTCATTTCTTCTTAATCGGAGTTGGTCTTTTATTAATATATATATTATATTCCACTACACAGTTCATTAGTTCTTGAAACTGTAATATGTTGTTGAAGCTGTGCATTTTGGGGCTTCTAAACCTGATGTTGGACATCGAGTGCATAGGGGCTAGCTTGGGTTGTTTTTTTTTTGTTATTATTATTTTTTTTTTGCTCTTTTCGCCATTGCATTTATGATCTTGAATTTGTGGAAGTAAGAGATAGATATTCAACTCGTGAATAATATTTATATTTACTAATGTAATTGATTTCAATGATCCATCTATCTATTTACATGTTTATTATCGTCTATTCCGTCTGAAGAAATTTGTTTGACCAACTTCTGCATCTCTATTTCTTTTGATGATTATAGCTGAGGAGTGTCATTGATCCCAAGAGACACTACAAAAAGGGTGATTCAAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGTTTTGAATTTCACGAGTATTTTACTAATTTTATACATTGGCAAAAGTAAAATTTTCTTATTTGACTTAATTTACAGCGTATATATCTGCTTAGAACCTATGTAATGTTTTAAGTATTTATCAGGTGGGAACTGTGGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGACGAACTGCTATCTGACCAGGCTCTCACTCAGTACAGGTTTGATCTTTATAATGTCCTTTTGCTATTGCTAAATTTTCCAGTGAAGAAAAAGAAATGGGGAAGTATATGGCTACCCATTTTGAATTCTACAAATTATCCATTCCTAGGCTATGGTTGCTTCCTGAGAATCACTTGCATGGGGGACGTCATTTTTTATACATGTTAAGAAGTTAAACTTAGATCTGAAAAATTGTATTCTAATGAAACAATGGTGGAGCGTGATCGGGCTCTTATCTTATCATTTTTGTATCCCTCAAAACAGATTGTAGTGATAATGTCTTCTTAACCAGTTTTTTTCATAGACTCTCACATCATAATTTTGAAGATTCTTTTGCTTCAAGTCGGAATGTAATAATTCTGGTGCATTACCAAGCATTTTGTTGTGCTTATGTTTTTTTAAAAACCTCTTGCAGGAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCGTCATTCACAAAAACGGGCAAAGGATAGGAGGCAGTAGTTAAGCTACCTCAAAATTTTGACGTGTAAGCCATATAAACACAGCAGGATCGAATCAAGCTAGGTGGGTGGGGTTTGTGACCCAGTGTGATACAATAGTAGGCGAATTCATCATTTGTACTGCCGGCTCCAACTTGATTTATGGGCTAGGTGAAGTCCTTCAAATATTCCCCCCTATTGAATTGATGATTTGTATTAGGAGTAGAAATGTTCTTCAGGTTATTTTATTGAACCTGTATTTAAGAAATTTTGTTTATTTGCCACCAAGTATAACGACGTATTATTGGGGAAAAAAAGTTGGGAAGAAAGTGCTTTTTGGGGAACAAATGTGTGCTGTCCATAAACCATGGAGAATACGAACA

mRNA sequence

CTCTCGCAAACCCTCGTGAAAAGAGGGGGGATAGCCTTCTCGAGTCTGATTTTCGCACAAACCCTCACTCTCTCGCTGTGTCCTCCTCAATCTTCTGCAGTCTTCCCCAATCTCACGATCTTGCACTGCGCAAGACGGGTTAAGCCTTGGGCTTGTTCGCTTGGAGGTCGTCTTCGTGGGCTTGCCGTGTTAAGCCGCCGTCCACCGTTCGTTGTGGAAGTCATGTCAGAAAGAAAGCCTATCATTGGCCTCTCTTGGGAGCCAAAGCTGCCCGCCTCCTCATTGGGGGTCAGAACTAAAACTTGTGATAAATCTAACAGTCAAGCAGAAAACAGTCTTGTTTGGAAAACCAACTCAGAGCTTGTTGATGGGCTGTTTGTTCCACCAAACAAACCAAAAAAATTGAACAAGTTATTGAGAAAGCAAGTCAGCGACACGGCTGGGAGGAATTGGTTTGACATGCCAGCACAAACCGTGACCCCTGAAGTGGAAAAAGATTTGCGCTTGTTGAAGGTGGGAACTGTGGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGACGAACTGCTATCTGACCAGGCTCTCACTCAGTACAGGAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCGTCATTCACAAAAACGGGCAAAGGATAGGAGGCAGTAGTTAAGCTACCTCAAAATTTTGACGTGTAAGCCATATAAACACAGCAGGATCGAATCAAGCTAGGTGGGTGGGGTTTGTGACCCAGTGTGATACAATAGTAGGCGAATTCATCATTTGTACTGCCGGCTCCAACTTGATTTATGGGCTAGGTGAAGTCCTTCAAATATTCCCCCCTATTGAATTGATGATTTGTATTAGGAGTAGAAATGTTCTTCAGGTTATTTTATTGAACCTGTATTTAAGAAATTTTGTTTATTTGCCACCAAGTATAACGACGTATTATTGGGGAAAAAAAGTTGGGAAGAAAGTGCTTTTTGGGGAACAAATGTGTGCTGTCCATAAACCATGGAGAATACGAACA

Coding sequence (CDS)

ATGTCAGAAAGAAAGCCTATCATTGGCCTCTCTTGGGAGCCAAAGCTGCCCGCCTCCTCATTGGGGGTCAGAACTAAAACTTGTGATAAATCTAACAGTCAAGCAGAAAACAGTCTTGTTTGGAAAACCAACTCAGAGCTTGTTGATGGGCTGTTTGTTCCACCAAACAAACCAAAAAAATTGAACAAGTTATTGAGAAAGCAAGTCAGCGACACGGCTGGGAGGAATTGGTTTGACATGCCAGCACAAACCGTGACCCCTGAAGTGGAAAAAGATTTGCGCTTGTTGAAGGTGGGAACTGTGGTTGAGTCTTCTTTGGACTTCTTCACGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGACGAACTGCTATCTGACCAGGCTCTCACTCAGTACAGGAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCTGCTGGCAACGATAAATGGAAAATAAGGGGTCGTCATTCACAAAAACGGGCAAAGGATAGGAGGCAGTAG

Protein sequence

MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKKLNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLKVGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIRGRHSQKRAKDRRQ

Homology

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BLAST of ClCG06G002080 vs. Swiss-Prot
Match: FCF2_SCHPO (rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf2 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.7e-13
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 1


Query: 66  RKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK------------------------VGTV 125
           +K + DTAG NWFDMPA  +T  V++D++LLK                        VG++
Sbjct: 104 KKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKSMPKYFQVGSI 163

Query: 126 VESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIRGRH 172
           VE   DF++ R+  +ERK T+ DELL D     Y K+K  E++         K K+ GR 
Sbjct: 164 VEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQ---------KSKMSGRK 223

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BLAST of ClCG06G002080 vs. Swiss-Prot
Match: TDIF2_BOVIN (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus GN=DNTTIP2 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 1


Query: 18  ASSLGVRTKTCDKSNSQAENSLVWKT--NSELVDGLFVPPNKPKK--LNKLLRKQVSDTA 77
           A  + +  +T  +   + ++ L+ KT    E      VPP    K  L K  R++   TA
Sbjct: 592 ADKVQLNKRTLTQMKEKRKDELLQKTVITPEFEKNYCVPPYSESKYKLQKKRRQERQKTA 651

Query: 78  GRNWFDMPAQTVTPEVEKDLRLLK------------------------VGTVVESSLDFF 137
           G  WF M A  +T E++ DL+ LK                        +GT+V++  DF+
Sbjct: 652 GDGWFGMKAPELTDELKNDLKALKMRASMDPKRFYKKNDRDGFPKYFQIGTIVDNPADFY 711

Query: 138 TGRLTKKERKATLADELLSDQALTQYRKRKVQEI 144
             R+ KK+RK T+ +ELL+D    +Y +RK  EI
Sbjct: 712 HSRVPKKQRKRTIVEELLADSEFRRYNRRKYSEI 745

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BLAST of ClCG06G002080 vs. Swiss-Prot
Match: TDIF2_MOUSE (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus GN=Dnttip2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-11
Identity = 42/117 (35.90%), Postives = 56/117 (47.86%), Query Frame = 1


Query: 53  VPPNKPKK--LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK------------- 112
           VPP    K  L K  RK+   TAG  WF M A  +T E++ DLR LK             
Sbjct: 621 VPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKK 680

Query: 113 -----------VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEI 144
                      VGT+V++  DF+  R+ KK+RK T+ +ELL+D    ++ +RK  EI
Sbjct: 681 NDRDGFPKYFQVGTIVDNPADFYHSRIPKKQRKKTIVEELLADSEFRRFNRRKYSEI 737

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BLAST of ClCG06G002080 vs. Swiss-Prot
Match: TDIF2_HUMAN (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens GN=DNTTIP2 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 47/154 (30.52%), Postives = 68/154 (44.16%), Query Frame = 1


Query: 18  ASSLGVRTKTCDKSNSQAENSLVWKT--NSELVDGLFVPPNKPKK--LNKLLRKQVSDTA 77
           A  L    +T  +   + +N L+ K     +      VPP    K  L K  RK+   TA
Sbjct: 582 ADKLQSNKRTLTQIKEKKKNELLQKAVITPDFEKNHCVPPYSESKYQLQKKRRKERQKTA 641

Query: 78  GRNWFDMPAQTVTPEVEKDLRLLK------------------------VGTVVESSLDFF 137
           G  WF M A  +T E++ DL+ LK                        +GT+V++  DF+
Sbjct: 642 GDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKKNDRDGFPKYFQIGTIVDNPADFY 701

Query: 138 TGRLTKKERKATLADELLSDQALTQYRKRKVQEI 144
             R+ KK+RK T+ +ELL+D    +Y +RK  EI
Sbjct: 702 HSRIPKKQRKRTIVEELLADSEFRRYNRRKYSEI 735

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BLAST of ClCG06G002080 vs. Swiss-Prot
Match: FCF2_YEAST (rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 42/153 (27.45%), Postives = 67/153 (43.79%), Query Frame = 1


Query: 46  ELVDGLFVPPNKPKKLNKL--------LRKQVSDTAGRNWFDMPA--QTVTPEVEKDLRL 105
           +L  G     NK KK N L         +   SD    +WF +P     +  EV++DL L
Sbjct: 64  KLETGFDALANKKKKKNVLPSVETEDKRKPNKSDKNDNDWFTLPKPDDNMRREVQRDLLL 123

Query: 106 LK-----------------------VGTVVESSLDFFTGRLTKKERKATLADELLSDQAL 165
           +K                       +GT++E   +F++ R+ +KERK+T+ + L+ D+A 
Sbjct: 124 IKHRAALDPKRHYKKQRWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILETLMGDEAS 183

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BLAST of ClCG06G002080 vs. TrEMBL
Match: A0A0A0K9M7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094730 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.7e-79
Identity = 154/196 (78.57%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           MS+ KPIIGLSWEPKLPASS G++ KTCDKSNSQAEN LVWK+NSELVDGLFVPPN PKK
Sbjct: 1   MSKGKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK----------------------- 120
           LNKLLRKQVSDTAGRNWFDMPA+T+TPEVEKDLRLLK                       
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 ---VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDK 171
              VGTVVESSLDFF+GRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRP GNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

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BLAST of ClCG06G002080 vs. TrEMBL
Match: A0A151S452_CAJCA (rRNA-processing protein fcf2 OS=Cajanus cajan GN=KK1_028653 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.2e-62
Identity = 121/170 (71.18%), Postives = 142/170 (83.53%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           M E KP+IGLSW+P+LP  SL V   +  K   +A  S VWK++SELVDGL VPPN P+K
Sbjct: 1   MPESKPVIGLSWQPQLPIPSLKVTYGSHSKPQIEASTSTVWKSSSELVDGLLVPPNDPRK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLKVGTVVESSLDFFTGRLTKKERKA 120
           LNKLLRKQV DTAG  WF+MPAQT+TPE++KDL+LLKVGTVV+S LDFF+GRLTKKERK 
Sbjct: 61  LNKLLRKQVKDTAGEKWFNMPAQTITPELQKDLQLLKVGTVVDSPLDFFSGRLTKKERKT 120

Query: 121 TLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIRGRHSQKRAKDRR 171
           TLADELLSDQ L  YRKRKV+EIEEQNRPAGN+KWKI+  +S+KRAK+RR
Sbjct: 121 TLADELLSDQNLASYRKRKVREIEEQNRPAGNEKWKIKS-NSRKRAKERR 169

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BLAST of ClCG06G002080 vs. TrEMBL
Match: A0A151TPC3_CAJCA (rRNA-processing protein fcf2 OS=Cajanus cajan GN=KK1_022530 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 119/170 (70.00%), Postives = 140/170 (82.35%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           M E KP+IGLSW+P+LP  SL     +  K   +A  S VWK++ ELVDGL VPPN P+K
Sbjct: 1   MPESKPVIGLSWQPQLPIPSLKTTNGSHPKPQIEASTSTVWKSSLELVDGLLVPPNDPRK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLKVGTVVESSLDFFTGRLTKKERKA 120
           LNKLLRKQV DTAG  WF+MPAQT+TPE++KDL+LLKVGTVV+S LDFF+GRLTKKERKA
Sbjct: 61  LNKLLRKQVKDTAGEKWFNMPAQTITPELQKDLQLLKVGTVVDSPLDFFSGRLTKKERKA 120

Query: 121 TLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIRGRHSQKRAKDRR 171
           TLADELLSDQ L  YRKRKV+EIEEQNRPAGN+KWKI+  +S+K AK+RR
Sbjct: 121 TLADELLSDQNLASYRKRKVREIEEQNRPAGNEKWKIKS-NSRKWAKERR 169

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BLAST of ClCG06G002080 vs. TrEMBL
Match: V4S6F6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005920mg PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 124/199 (62.31%), Postives = 146/199 (73.37%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKT---CDKSNSQAENSLVWKTNSELVDGLFVPPNK 60
           ++E+K +IGLSW+PKLPA+     T      ++S SQ E+SL+W+ N+ELVDGLFVPPN 
Sbjct: 3   IAEKKAVIGLSWQPKLPATLSSASTNNNGGVNESQSQRESSLLWRPNTELVDGLFVPPND 62

Query: 61  PKKLNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK-------------------- 120
           PKKLNKLL+KQ+ DTAG +WFDMPA T+TPE++KDL+LLK                    
Sbjct: 63  PKKLNKLLKKQIKDTAGTSWFDMPAATITPELKKDLQLLKLRSAMDPKRHYKKSEAKSKT 122

Query: 121 ------VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAG 171
                 VGTVVESS DFF+ RLTKKERKATLADELLSD  L QYRKRKV+EIE QNRPAG
Sbjct: 123 LPKYFQVGTVVESSTDFFSSRLTKKERKATLADELLSDPTLGQYRKRKVREIESQNRPAG 182

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BLAST of ClCG06G002080 vs. TrEMBL
Match: A0A067K6V6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19085 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.1e-59
Identity = 120/194 (61.86%), Postives = 145/194 (74.74%), Query Frame = 1


Query: 3   ERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKKLN 62
           E KP+IGLSWEPKLPA S   + KT  KSN Q E S +WK+N+EL+DGLFVPPN P K+N
Sbjct: 2   EEKPMIGLSWEPKLPAFSSSTKVKT--KSNDQPEGSALWKSNTELIDGLFVPPNDPIKVN 61

Query: 63  KLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK------------------------- 122
           KLLR Q  D+AG++WFDMPA T+TPE++KDL+LLK                         
Sbjct: 62  KLLRSQAKDSAGKDWFDMPAPTMTPELKKDLQLLKLRNALDPKRHYKKGDSKTKALPKYF 121

Query: 123 -VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWK 171
            VGTV+ES+ DFF+GRLTKKERKATLA+ELLSD+ L  YRKRKV+EIEEQ+RPAGN+KWK
Sbjct: 122 QVGTVIESATDFFSGRLTKKERKATLAEELLSDRNLAAYRKRKVREIEEQSRPAGNEKWK 181

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BLAST of ClCG06G002080 vs. TAIR10
Match: AT5G30495.2 (AT5G30495.2 Fcf2 pre-rRNA processing protein)

HSP 1 Score: 190.7 bits (483), Expect = 7.7e-49
Identity = 100/198 (50.51%), Postives = 131/198 (66.16%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAEN---SLVWKTNSELVDGLFVPPNK 60
           M+E KP+IGL+WEPKLP  SL   TKTC  S+ + E+   S +W + SELVDGL +PPN 
Sbjct: 1   MAETKPLIGLTWEPKLPGLSLD--TKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK-------------------- 120
           PKK+NK++RKQ+ DT G NWFDMPA T+TPE+++DL+LLK                    
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 ------VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAG 170
                 +GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIEE++R   
Sbjct: 121 AEKYFQIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVT 180

[Close]

BLAST of ClCG06G002080 vs. TAIR10
Match: AT1G54770.1 (AT1G54770.1 Fcf2 pre-rRNA processing protein)

HSP 1 Score: 168.3 bits (425), Expect = 4.1e-42
Identity = 90/192 (46.88%), Postives = 119/192 (61.98%), Query Frame = 1


Query: 4   RKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKKLNK 63
           ++P+IGL WEPKLP  SL ++T +     +++       + SELVDGL +PPN P+K+NK
Sbjct: 5   KQPLIGLKWEPKLPGLSLDLKTGSTRSKTAES-------SKSELVDGLCLPPNDPRKINK 64

Query: 64  LLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLKVGTVVESSLDF--------------- 123
           ++RKQ+ DT G NWFDMPA T+TPE+++DL+LLK+ TV++ +L +               
Sbjct: 65  MIRKQLKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPALHYKKSVSRSKLAEKYFQ 124

Query: 124 ----------FTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIR 171
                     F GRLTKK RKATLADEL+SD     YRKRKV+EIEE++R   N KW  +
Sbjct: 125 IGTVIEPAEEFYGRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAVTNKKWNKK 184

[Close]

BLAST of ClCG06G002080 vs. NCBI nr
Match: gi|659119814|ref|XP_008459856.1| (PREDICTED: rRNA-processing protein fcf2 [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 3.5e-80
Identity = 155/196 (79.08%), Postives = 165/196 (84.18%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           MSERKPIIGLSWEPKLPASS G++TKTCDKSN+QAEN +VWK+NSELVDGLFVPPN PKK
Sbjct: 1   MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK----------------------- 120
           LNKLLRKQVSDTAGRNWFDMPA+T+TPEVEKDLRLLK                       
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 ---VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDK 171
              VGTVVESSLDFF+GRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRP GNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

[Close]

BLAST of ClCG06G002080 vs. NCBI nr
Match: gi|778711861|ref|XP_011656806.1| (PREDICTED: rRNA-processing protein fcf2 [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 6.7e-79
Identity = 154/196 (78.57%), Postives = 163/196 (83.16%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           MS+ KPIIGLSWEPKLPASS G++ KTCDKSNSQAEN LVWK+NSELVDGLFVPPN PKK
Sbjct: 1   MSKGKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK----------------------- 120
           LNKLLRKQVSDTAGRNWFDMPA+T+TPEVEKDLRLLK                       
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 ---VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDK 171
              VGTVVESSLDFF+GRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRP GNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

[Close]

BLAST of ClCG06G002080 vs. NCBI nr
Match: gi|1012338314|gb|KYP49569.1| (rRNA-processing protein fcf2 [Cajanus cajan])

HSP 1 Score: 245.4 bits (625), Expect = 7.4e-62
Identity = 121/170 (71.18%), Postives = 142/170 (83.53%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           M E KP+IGLSW+P+LP  SL V   +  K   +A  S VWK++SELVDGL VPPN P+K
Sbjct: 1   MPESKPVIGLSWQPQLPIPSLKVTYGSHSKPQIEASTSTVWKSSSELVDGLLVPPNDPRK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLKVGTVVESSLDFFTGRLTKKERKA 120
           LNKLLRKQV DTAG  WF+MPAQT+TPE++KDL+LLKVGTVV+S LDFF+GRLTKKERK 
Sbjct: 61  LNKLLRKQVKDTAGEKWFNMPAQTITPELQKDLQLLKVGTVVDSPLDFFSGRLTKKERKT 120

Query: 121 TLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIRGRHSQKRAKDRR 171
           TLADELLSDQ L  YRKRKV+EIEEQNRPAGN+KWKI+  +S+KRAK+RR
Sbjct: 121 TLADELLSDQNLASYRKRKVREIEEQNRPAGNEKWKIKS-NSRKRAKERR 169

[Close]

BLAST of ClCG06G002080 vs. NCBI nr
Match: gi|1012357696|gb|KYP68881.1| (rRNA-processing protein fcf2 [Cajanus cajan])

HSP 1 Score: 240.4 bits (612), Expect = 2.4e-60
Identity = 119/170 (70.00%), Postives = 140/170 (82.35%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKTCDKSNSQAENSLVWKTNSELVDGLFVPPNKPKK 60
           M E KP+IGLSW+P+LP  SL     +  K   +A  S VWK++ ELVDGL VPPN P+K
Sbjct: 1   MPESKPVIGLSWQPQLPIPSLKTTNGSHPKPQIEASTSTVWKSSLELVDGLLVPPNDPRK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLKVGTVVESSLDFFTGRLTKKERKA 120
           LNKLLRKQV DTAG  WF+MPAQT+TPE++KDL+LLKVGTVV+S LDFF+GRLTKKERKA
Sbjct: 61  LNKLLRKQVKDTAGEKWFNMPAQTITPELQKDLQLLKVGTVVDSPLDFFSGRLTKKERKA 120

Query: 121 TLADELLSDQALTQYRKRKVQEIEEQNRPAGNDKWKIRGRHSQKRAKDRR 171
           TLADELLSDQ L  YRKRKV+EIEEQNRPAGN+KWKI+  +S+K AK+RR
Sbjct: 121 TLADELLSDQNLASYRKRKVREIEEQNRPAGNEKWKIKS-NSRKWAKERR 169

[Close]

BLAST of ClCG06G002080 vs. NCBI nr
Match: gi|567852145|ref|XP_006419236.1| (hypothetical protein CICLE_v10005920mg [Citrus clementina])

HSP 1 Score: 240.0 bits (611), Expect = 3.1e-60
Identity = 124/199 (62.31%), Postives = 146/199 (73.37%), Query Frame = 1


Query: 1   MSERKPIIGLSWEPKLPASSLGVRTKT---CDKSNSQAENSLVWKTNSELVDGLFVPPNK 60
           ++E+K +IGLSW+PKLPA+     T      ++S SQ E+SL+W+ N+ELVDGLFVPPN 
Sbjct: 3   IAEKKAVIGLSWQPKLPATLSSASTNNNGGVNESQSQRESSLLWRPNTELVDGLFVPPND 62

Query: 61  PKKLNKLLRKQVSDTAGRNWFDMPAQTVTPEVEKDLRLLK-------------------- 120
           PKKLNKLL+KQ+ DTAG +WFDMPA T+TPE++KDL+LLK                    
Sbjct: 63  PKKLNKLLKKQIKDTAGTSWFDMPAATITPELKKDLQLLKLRSAMDPKRHYKKSEAKSKT 122

Query: 121 ------VGTVVESSLDFFTGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAG 171
                 VGTVVESS DFF+ RLTKKERKATLADELLSD  L QYRKRKV+EIE QNRPAG
Sbjct: 123 LPKYFQVGTVVESSTDFFSSRLTKKERKATLADELLSDPTLGQYRKRKVREIESQNRPAG 182

The following BLAST results are available for this feature:

BLAST of ClCG06G002080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FCF2_SCHPO	3.7e-13	35.11	rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TDIF2_BOVIN	1.6e-11	29.87	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus GN=DNTT...	[more]
TDIF2_MOUSE	2.1e-11	35.90	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus GN=Dn...	[more]
TDIF2_HUMAN	2.7e-11	30.52	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens GN=DN...	[more]
FCF2_YEAST	1.6e-08	27.45	rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of ClCG06G002080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9M7_CUCSA	4.7e-79	78.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G094730 PE=4 SV=1	[more]
A0A151S452_CAJCA	5.2e-62	71.18	rRNA-processing protein fcf2 OS=Cajanus cajan GN=KK1_028653 PE=4 SV=1	[more]
A0A151TPC3_CAJCA	1.7e-60	70.00	rRNA-processing protein fcf2 OS=Cajanus cajan GN=KK1_022530 PE=4 SV=1	[more]
V4S6F6_9ROSI	2.2e-60	62.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005920mg PE=4 SV=1	[more]
A0A067K6V6_JATCU	3.1e-59	61.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19085 PE=4 SV=1	[more]

BLAST of ClCG06G002080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G30495.2	7.7e-49	50.51	Fcf2 pre-rRNA processing protein	[more]
AT1G54770.1	4.1e-42	46.88	Fcf2 pre-rRNA processing protein	[more]

BLAST of ClCG06G002080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119814\|ref\|XP_008459856.1\|	3.5e-80	79.08	PREDICTED: rRNA-processing protein fcf2 [Cucumis melo]	[more]
gi\|778711861\|ref\|XP_011656806.1\|	6.7e-79	78.57	PREDICTED: rRNA-processing protein fcf2 [Cucumis sativus]	[more]
gi\|1012338314\|gb\|KYP49569.1\|	7.4e-62	71.18	rRNA-processing protein fcf2 [Cajanus cajan]	[more]
gi\|1012357696\|gb\|KYP68881.1\|	2.4e-60	70.00	rRNA-processing protein fcf2 [Cajanus cajan]	[more]
gi\|567852145\|ref\|XP_006419236.1\|	3.1e-60	62.31	hypothetical protein CICLE_v10005920mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014810	Fcf2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0010155	regulation of proton transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G002080.1	ClCG06G002080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014810	Fcf2 pre-rRNA processing	PFAM	PF08698	Fcf2	coord: 71..97 score: 2.7E-6coord: 97..139 score: 7.1
None	No IPR available	PANTHER	PTHR21686	UNCHARACTERIZED	coord: 1..167 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G002080	Csa6G094730	Cucumber (Chinese Long) v2	cuwcgB476
ClCG06G002080	Cla001516	Watermelon (97103) v1	wcgwmB345
ClCG06G002080	Cla97C06G111400	Watermelon (97103) v2	wcgwmbB273
ClCG06G002080	Bhi12G002171	Wax gourd	wcgwgoB491
ClCG06G002080	CSPI06G07770	Wild cucumber (PI 183967)	cpiwcgB503
ClCG06G002080	Cucsa.349590	Cucumber (Gy14) v1	cgywcgB595
ClCG06G002080	CmaCh08G001680	Cucurbita maxima (Rimu)	cmawcgB803
ClCG06G002080	CmaCh17G014340	Cucurbita maxima (Rimu)	cmawcgB322
ClCG06G002080	CmoCh08G001700	Cucurbita moschata (Rifu)	cmowcgB798
ClCG06G002080	Lsi09G017330	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G002080	Cp4.1LG17g10690	Cucurbita pepo (Zucchini)	cpewcgB296
ClCG06G002080	Cp4.1LG01g11930	Cucurbita pepo (Zucchini)	cpewcgB402
ClCG06G002080	CsGy6G007830	Cucumber (Gy14) v2	cgybwcgB438
ClCG06G002080	MELO3C035238.2	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G002080	Carg04996	Silver-seed gourd	carwcgB0082
ClCG06G002080	Carg11593	Silver-seed gourd	carwcgB0013
ClCG06G002080	CsaV3_6G008150	Cucumber (Chinese Long) v3	cucwcgB497

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G002080	Wax gourd	wcgwgoB532
ClCG06G002080	Watermelon (Charleston Gray)	wcgwcgB163
ClCG06G002080	Watermelon (Charleston Gray)	wcgwcgB173
ClCG06G002080	Cucurbita moschata (Rifu)	cmowcgB318
ClCG06G002080	Wild cucumber (PI 183967)	cpiwcgB254
ClCG06G002080	Cucumber (Chinese Long) v2	cuwcgB244
ClCG06G002080	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G002080	Melon (DHL92) v3.5.1	mewcgB444
ClCG06G002080	Cucurbita pepo (Zucchini)	cpewcgB564
ClCG06G002080	Cucurbita pepo (Zucchini)	cpewcgB789
ClCG06G002080	Cucumber (Gy14) v2	cgybwcgB229