Lsi09G016830 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G016830
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLeucine carboxyl methyltransferase, putative
Locationchr09 : 25267634 .. 25269580 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTAATTCGAAACAGAGGGCAAGGGTTTTGTTCAATTCAGTTCCTATGCGATTCATCGCTGAAGTGAAAAGTGACCAAAGCTATTTTAGCATCCTTCCCCTCCCCAACTTGTCTTTCACTATTGCGTTAACCTCGAAGCTCTCTGGCGATTCGAAAATGGCGAAGGCCCCTCCCGATTCGCAGAGCAACAGAGCAGCGGTGCAGGCCACCAACGACGACGCCTCTGCCAGTAAACTGTGAGCAAACTCATTTTAACGCATTATTCTGTCATTATCTTTACGCGTTCGTGATCCATTCTGAGCATTTTCCAGTTTTCAAATTCGGCGCTTCAAATTTTGCTTTAGATTGCCTTTTTTTTCCCGCCTTCTCAACGCCGTCGAGGTGGTCTTTTGTTTTCACGAGTCGATGTTGATTGCATGAAAGCACTCTTCATCCTTAAGGAACTTTCCAGTTGGTGTACACGCTAAGATTTCGTTATTTTGGTTGGCACTTGGTGAAGAATCCTCACTCTATCATATGGGATGGGATGCAATCATGCTAGAATTAATTTTAGTTCCATGCTCGTAGTTGGACTCTGTTCTCACAAAAACAATTTTGATCCATCATTTATTTATGAACATTGAATCTGGTCCATTCTTTGGTAGAGTTTAAAAATGAGCTGGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATTTATGCGTCAGGATGTAATATGAGCTTCCCCTGTTTGGTTAACAGATCATGTGTTAGAAAGGGATACATGAAAGACGACTACATACACCTTTTTGTACGAAGGCCTGTCAAGAGATCTCCAATTATCAATCGAGGTACAATCTTGTGTTGCTTCCCTTAAATATATCATTTTTTAGAACTTTCTTTTATTCACTTTGTAGTAATTTTCTTTACGTTGTTGCTAATAAGGTTATTTTGCCCGGTGGGCCGCACTGAGGAAGCTCCTCTTTCAATTCCTCAATGTTGGAAGTAATACAGAGGAACATACAAAGAAGCAGATATTATCGCTTGGAGCTGGCTTTGACACAACGTACTTCCAATTGCAGGCAAGCTGCTTAATTAGGTCACGGGCTACAACATCTTTAGCCTAG

mRNA sequence

CCTAATTCGAAACAGAGGGCAAGGGTTTTGTTCAATTCAGTTCCTATGCGATTCATCGCTGAAGTGAAAAGTGACCAAAGCTATTTTAGCATCCTTCCCCTCCCCAACTTGTCTTTCACTATTGCGTTAACCTCGAAGCTCTCTGGCGATTCGAAAATGGCGAAGGCCCCTCCCGATTCGCAGAGCAACAGAGCAGCGGTGCAGGCCACCAACGACGACGCCTCTGCCAGTAAACTATCATGTGTTAGAAAGGGATACATGAAAGACGACTACATACACCTTTTTGTACGAAGGCCTGTCAAGAGATCTCCAATTATCAATCGAGGTTATTTTGCCCGGTGGGCCGCACTGAGGAAGCTCCTCTTTCAATTCCTCAATGTTGGAAGTAATACAGAGGAACATACAAAGAAGCAGATATTATCGCTTGGAGCTGGCTTTGACACAACGTACTTCCAATTGCAGGCAAGCTGCTTAATTAGGTCACGGGCTACAACATCTTTAGCCTAG

Coding sequence (CDS)

CCTAATTCGAAACAGAGGGCAAGGGTTTTGTTCAATTCAGTTCCTATGCGATTCATCGCTGAAGTGAAAAGTGACCAAAGCTATTTTAGCATCCTTCCCCTCCCCAACTTGTCTTTCACTATTGCGTTAACCTCGAAGCTCTCTGGCGATTCGAAAATGGCGAAGGCCCCTCCCGATTCGCAGAGCAACAGAGCAGCGGTGCAGGCCACCAACGACGACGCCTCTGCCAGTAAACTATCATGTGTTAGAAAGGGATACATGAAAGACGACTACATACACCTTTTTGTACGAAGGCCTGTCAAGAGATCTCCAATTATCAATCGAGGTTATTTTGCCCGGTGGGCCGCACTGAGGAAGCTCCTCTTTCAATTCCTCAATGTTGGAAGTAATACAGAGGAACATACAAAGAAGCAGATATTATCGCTTGGAGCTGGCTTTGACACAACGTACTTCCAATTGCAGGCAAGCTGCTTAATTAGGTCACGGGCTACAACATCTTTAGCCTAG

Protein sequence

PNSKQRARVLFNSVPMRFIAEVKSDQSYFSILPLPNLSFTIALTSKLSGDSKMAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFARWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQASCLIRSRATTSLA
Homology
[Close]
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: TYW4_MOUSE (tRNA wybutosine-synthesizing protein 4 OS=Mus musculus GN=Lcmt2 PE=2 SV=4)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-15
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 1 

Query: 57  PPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFARWAA 116
           P   Q     VQ+TND +S SK S    GY++D +  L V  PV+R+P+I+RGY+ R  A
Sbjct: 3   PRGRQRRAGTVQSTNDSSSLSKRSLAAHGYVRDPFAALLVPGPVRRTPLIHRGYYVRARA 62

Query: 117 LRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQASCLIRSRA 164
           +R  +  FL + S     T+ QILSLG+G D+ YF+L+A+ L+   A
Sbjct: 63  VRHCVRAFLELTSALPSRTRAQILSLGSGSDSLYFRLKAAGLLARAA 109

[Close]
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: TYW4_RAT (tRNA wybutosine-synthesizing protein 4 OS=Rattus norvegicus GN=Lcmt2 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-14
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 57  PPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFARWAA 116
           P   Q     VQ+TND +S SK S   +GY+ D +  L V   V+R+P+I+RGY+ R  A
Sbjct: 3   PRSRQRRTGTVQSTNDSSSLSKRSLAAQGYVSDAFAPLLVPGIVRRTPLIHRGYYVRARA 62

Query: 117 LRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQASCLIRSRA 164
           +R  +  FL++       T+ QILSLG+G D+ YF+L+A+ L+   A
Sbjct: 63  VRHCVRAFLDLTGAIRSPTRAQILSLGSGSDSLYFRLKAAGLLTRTA 109

[Close]
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: TYW4_HUMAN (tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens GN=LCMT2 PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 8.2e-13
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 58  PDSQSNRA-AVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFARWAA 117
           P S+  RA AVQ TND ++ SK S   +GY++D +  L V    +R+P+I+RGY+ R  A
Sbjct: 3   PRSRERRAGAVQNTNDSSALSKRSLAARGYVQDPFAALLVPGAARRAPLIHRGYYVRARA 62

Query: 118 LRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQAS 157
           +R  +  FL      +   + QILSLGAGFD+ YF+L+ +
Sbjct: 63  VRHCVRAFLEQIGAPQAALRAQILSLGAGFDSLYFRLKTA 102

[Close]
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: LCMT1_GIBZE (Leucine carboxyl methyltransferase 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PPM1 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-12
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 60  SQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRR----PVKRSPIINRGYFARWA 119
           S ++ + +Q T+ DAS S+LS V  GY+ D Y   FVR       +R PIINRG +AR  
Sbjct: 33  SATHDSTIQGTDTDASVSRLSAVDLGYLDDPYAQYFVRSSAGPAARRLPIINRGTYARTI 92

Query: 120 ALRKLLFQFLNVGSNT-EEHTKKQILSLGAGFDTTYFQLQAS 157
           +L  L+  FL+   +T  + T KQI+SLGAG DT  F+L AS
Sbjct: 93  SLDTLIESFLSADQSTGPDSTPKQIVSLGAGTDTRPFRLFAS 134

[Close]
BLAST of Lsi09G016830 vs. Swiss-Prot
Match: LCMT1_NEUCR (Leucine carboxyl methyltransferase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ppm-1 PE=3 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1 

Query: 56  APPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRR---PVKRSPIINRGYFA 115
           AP  S ++ A +Q T+ DA+ S+LS V+ GY+ D Y  LF +      +R PIINRG +A
Sbjct: 43  APSASAAHDATIQGTDTDAAVSRLSAVQIGYIDDPYAELFAQSGPGAARRLPIINRGTYA 102

Query: 116 RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQL 154
           R  A+ KL+ +FL+   ++ E   +QI+SLGAG DT   +L
Sbjct: 103 RTTAIDKLVDKFLDDTESSPE--GRQIVSLGAGTDTRSLRL 141

[Close]
BLAST of Lsi09G016830 vs. TrEMBL
Match: A0A0A0KCH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104610 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.2e-48
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MAKA PDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVR+PVKRSPIINRGYFA
Sbjct: 1   MAKAAPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRKPVKRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQ 155
           RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDT YFQLQ
Sbjct: 61  RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTMYFQLQ 102

[Close]
BLAST of Lsi09G016830 vs. TrEMBL
Match: B9RCZ7_RICCO (Leucine carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_1608280 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MAK  PDS SNRAAVQATNDDASASKLSCV+KGYMKDDYIHLFVRRPV+RSPIINRGY+A
Sbjct: 1   MAKPVPDSHSNRAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYYA 60

Query: 113 RWAALRKLLFQFLNVGSNTEE--HTKKQILSLGAGFDTTYFQLQ 155
           RWAALRKL++QFL+   N +E  HTKKQILS+GAGFDTTYFQLQ
Sbjct: 61  RWAALRKLMYQFLDCEMNGDEKGHTKKQILSIGAGFDTTYFQLQ 104

[Close]
BLAST of Lsi09G016830 vs. TrEMBL
Match: V4VYW4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021096mg PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MA    DSQSN+AAVQATNDDASASKLSCV+KGYMKDDYIHLFVRRPV+RSPIINRGYFA
Sbjct: 1   MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEE--HTKKQILSLGAGFDTTYFQLQA 156
           RWAALR+LL+QFL+ GS+ ++  HTKKQILSLGAGFDTTYFQLQA
Sbjct: 61  RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQA 105

[Close]
BLAST of Lsi09G016830 vs. TrEMBL
Match: A0A067H0I8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018210mg PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MA    DSQSN+AAVQATNDDASASKLSCV+KGYMKDDYIHLFVRRPV+RSPIINRGYFA
Sbjct: 1   MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEE--HTKKQILSLGAGFDTTYFQLQA 156
           RWAALR+LL+QFL+ GS+ ++  HTKKQILSLGAGFDTTYFQLQA
Sbjct: 61  RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQA 105

[Close]
BLAST of Lsi09G016830 vs. TrEMBL
Match: A0A067HCC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018210mg PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-40
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MA    DSQSN+AAVQATNDDASASKLSCV+KGYMKDDYIHLFVRRPV+RSPIINRGYFA
Sbjct: 1   MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEE--HTKKQILSLGAGFDTTYFQLQA 156
           RWAALR+LL+QFL+ GS+ ++  HTKKQILSLGAGFDTTYFQLQA
Sbjct: 61  RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQA 105

[Close]
BLAST of Lsi09G016830 vs. TAIR10
Match: AT1G02100.3 (AT1G02100.3 Leucine carboxyl methyltransferase)

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-37
Identity = 76/95 (80.00%), Postives = 87/95 (91.58%), Query Frame = 1 

Query: 59  DSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFARWAALR 118
           +S+SNRAAVQATNDDASASKLSCV+KGYMKDDY+HLFV+RPV+RSPIINRGYF+RWAA R
Sbjct: 3   ESRSNRAAVQATNDDASASKLSCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFSRWAAFR 62

Query: 119 KLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQL 154
           KL+ QFL  G++    +KKQILSLGAGFDTTYFQL
Sbjct: 63  KLMSQFLLSGTS----SKKQILSLGAGFDTTYFQL 93

[Close]
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|659119671|ref|XP_008459781.1| (PREDICTED: tRNA wybutosine-synthesizing protein 4 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.7e-48
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MAKA PDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVR+PVKRSPIINRGYF+
Sbjct: 1   MAKAAPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRKPVKRSPIINRGYFS 60

Query: 113 RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQ 155
           RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQ
Sbjct: 61  RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQ 102

[Close]
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|449445505|ref|XP_004140513.1| (PREDICTED: tRNA wybutosine-synthesizing protein 4 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 6.0e-48
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MAKA PDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVR+PVKRSPIINRGYFA
Sbjct: 1   MAKAAPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRKPVKRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQ 155
           RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDT YFQLQ
Sbjct: 61  RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTMYFQLQ 102

[Close]
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|700191300|gb|KGN46504.1| (hypothetical protein Csa_6G104610 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 6.0e-48
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MAKA PDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVR+PVKRSPIINRGYFA
Sbjct: 1   MAKAAPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRKPVKRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTTYFQLQ 155
           RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDT YFQLQ
Sbjct: 61  RWAALRKLLFQFLNVGSNTEEHTKKQILSLGAGFDTMYFQLQ 102

[Close]
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|255541044|ref|XP_002511586.1| (PREDICTED: tRNA wybutosine-synthesizing protein 4 [Ricinus communis])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MAK  PDS SNRAAVQATNDDASASKLSCV+KGYMKDDYIHLFVRRPV+RSPIINRGY+A
Sbjct: 1   MAKPVPDSHSNRAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYYA 60

Query: 113 RWAALRKLLFQFLNVGSNTEE--HTKKQILSLGAGFDTTYFQLQ 155
           RWAALRKL++QFL+   N +E  HTKKQILS+GAGFDTTYFQLQ
Sbjct: 61  RWAALRKLMYQFLDCEMNGDEKGHTKKQILSIGAGFDTTYFQLQ 104

[Close]
BLAST of Lsi09G016830 vs. NCBI nr
Match: gi|641866829|gb|KDO85513.1| (hypothetical protein CISIN_1g018210mg [Citrus sinensis])

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 1 

Query: 53  MAKAPPDSQSNRAAVQATNDDASASKLSCVRKGYMKDDYIHLFVRRPVKRSPIINRGYFA 112
           MA    DSQSN+AAVQATNDDASASKLSCV+KGYMKDDYIHLFVRRPV+RSPIINRGYFA
Sbjct: 1   MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60

Query: 113 RWAALRKLLFQFLNVGSNTEE--HTKKQILSLGAGFDTTYFQLQA 156
           RWAALR+LL+QFL+ GS+ ++  HTKKQILSLGAGFDTTYFQLQA
Sbjct: 61  RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQA 105

The following BLAST results are available for this feature:
BLAST of Lsi09G016830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TYW4_MOUSE2.3e-1542.06tRNA wybutosine-synthesizing protein 4 OS=Mus musculus GN=Lcmt2 PE=2 SV=4[more]
TYW4_RAT9.7e-1440.19tRNA wybutosine-synthesizing protein 4 OS=Rattus norvegicus GN=Lcmt2 PE=2 SV=1[more]
TYW4_HUMAN8.2e-1342.00tRNA wybutosine-synthesizing protein 4 OS=Homo sapiens GN=LCMT2 PE=1 SV=3[more]
LCMT1_GIBZE1.8e-1245.10Leucine carboxyl methyltransferase 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-... [more]
LCMT1_NEUCR2.6e-1142.57Leucine carboxyl methyltransferase 1 OS=Neurospora crassa (strain ATCC 24698 / 7... [more]
BLAST of Lsi09G016830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCH5_CUCSA4.2e-4897.06Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104610 PE=4 SV=1[more]
B9RCZ7_RICCO1.1e-4083.65Leucine carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_1608280... [more]
V4VYW4_9ROSI1.4e-4083.81Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021096mg PE=4 SV=1[more]
A0A067H0I8_CITSI1.4e-4083.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018210mg PE=4 SV=1[more]
A0A067HCC6_CITSI1.4e-4083.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018210mg PE=4 SV=1[more]
BLAST of Lsi09G016830 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02100.31.7e-3780.00 Leucine carboxyl methyltransferase[more]
BLAST of Lsi09G016830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119671|ref|XP_008459781.1|2.7e-4897.06PREDICTED: tRNA wybutosine-synthesizing protein 4 [Cucumis melo][more]
gi|449445505|ref|XP_004140513.1|6.0e-4897.06PREDICTED: tRNA wybutosine-synthesizing protein 4 [Cucumis sativus][more]
gi|700191300|gb|KGN46504.1|6.0e-4897.06hypothetical protein Csa_6G104610 [Cucumis sativus][more]
gi|255541044|ref|XP_002511586.1|1.6e-4083.65PREDICTED: tRNA wybutosine-synthesizing protein 4 [Ricinus communis][more]
gi|641866829|gb|KDO85513.1|2.1e-4083.81hypothetical protein CISIN_1g018210mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR007213Ppm1/Ppm2/Tcmp
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0048573 photoperiodism, flowering
cellular_component GO:0005575 cellular_component
molecular_function GO:0008168 methyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016830.1Lsi09G016830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007213Methyltransferase Ppm1/Ppm2/TcmpPANTHERPTHR13600LEUCINE CARBOXYL METHYLTRANSFERASEcoord: 30..156
score: 2.4
IPR007213Methyltransferase Ppm1/Ppm2/TcmpPFAMPF04072LCMcoord: 66..154
score: 4.
NoneNo IPR availablePANTHERPTHR13600:SF6TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 4coord: 30..156
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G016830Csa6G104610Cucumber (Chinese Long) v2culsiB396
Lsi09G016830CSPI06G08230Wild cucumber (PI 183967)cpilsiB399
Lsi09G016830Cucsa.121130Cucumber (Gy14) v1cgylsiB170
Lsi09G016830CmaCh17G005210Cucurbita maxima (Rimu)cmalsiB331
Lsi09G016830CmaCh08G001450Cucurbita maxima (Rimu)cmalsiB814
Lsi09G016830CmoCh08G001460Cucurbita moschata (Rifu)cmolsiB800
Lsi09G016830CmoCh17G004920Cucurbita moschata (Rifu)cmolsiB320
Lsi09G016830Cla006715Watermelon (97103) v1lsiwmB036
Lsi09G016830MELO3C022277Melon (DHL92) v3.5.1lsimeB017
Lsi09G016830ClCG06G002510Watermelon (Charleston Gray)lsiwcgB029
Lsi09G016830MELO3C022277.2Melon (DHL92) v3.6.1lsimedB019
Lsi09G016830Cla97C06G111880Watermelon (97103) v2lsiwmbB026
Lsi09G016830Bhi12G001979Wax gourdlsiwgoB011
Lsi09G016830Cp4.1LG17g10440Cucurbita pepo (Zucchini)cpelsiB251
Lsi09G016830Cp4.1LG12g04440Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G016830CsGy6G008310Cucumber (Gy14) v2cgyblsiB362
Lsi09G016830Carg04972Silver-seed gourdcarlsiB070
Lsi09G016830Carg26731Silver-seed gourdcarlsiB123
Lsi09G016830CsaV3_6G008610Cucumber (Chinese Long) v3cuclsiB420
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G016830Cucumber (Gy14) v1cgylsiB562
Lsi09G016830Wild cucumber (PI 183967)cpilsiB404
Lsi09G016830Cucumber (Chinese Long) v2culsiB402
Lsi09G016830Cucumber (Gy14) v2cgyblsiB366
Lsi09G016830Cucumber (Chinese Long) v3cuclsiB424