Lsi09G010840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G010840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr09 : 17211575 .. 17212834 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAGTTACCCATCAATATCACTATGAAAGCTACCATTCTCCCTCCACATTACACCAACCAGCTTTCCTTCAAAATTATTCATTCGATAAATGACTCATGCCCTTTCCTTCTCTTAATTCCCATCTCCAACCATGGCTTCCAAATCATGGCCTTTTTTTCTAATCTGCCTTGCCTTTCTATTCCCTTCCGCGATCGGCCAGGCCCCGGCACAGCCACCCAGCTTGCCAACCGTCTCCCCACCGCCTTCTACCCCACCTCCGACCGCAACAACTCCTCCACCCTTGTCAACACCACCTCCTACTGTTGCACCTTCTACAAGCCCAACCATTCCACCACCCCAACCACCACAAAGTTCACCCATCTCGCCCCCGTCGCTACCACCAGCATTGCCACCTCCGCGCGCTACGCCTCCGCCATTGCCGCCTCCTTTGCCACCACCACAAGTCTCTCCAACTCCTTCACAGACACCACCGGTGCCAGCTCCCACCCTAGCACCATTACCAACTCCGCCAACACCAATGCCTTCACCACCAACACCAGCACCCGTCGCGGTGCCAGAATTATCCCCTGCACCCGCACCGGGAAAGCATAAGCGTAGGAGGCATCACAAACATAAGAAGCATCAAGCACCGGCCCCGGCCCCAACCGTCCCGAGCCCACCGGCACCACCTACGGTGGTGGATTCACAAGATAGCACAGCGCCAGCACCCTCACCAAATCTGGTAAAGTTTTATTTGTTTTCATTATTATTTAGATATCTCTATGATTAATGAAGATTAATAAAAAAAAAAAAAATATGTAAGATATATTGTAATTAGAGAATTTGAGTTGGAGAGTTCTGTTGTTAATACCATATTTTATGTTTATGAACAGAATGGAGGAGAGCCAATGAAAGGAAAGGTGGGAACATGGACTAGAGTTGTATTCGGATTCACACTTCTGGTTGCTACCACGGGCTTCAATTTCTAATTTTGAAGAGAGGATTATTCACAAGGAACCCATTATGGTTCATAATATTATAGAATTTGGCCCAGAATCTGAGAGAAGTATTTCATATATATCATTTTTTGTTCAATGATTTGTGGATTGGATTGGAATAATAATGAATTTTTTTTTTATTTTGGTAATTAATAATAATCTTCAAGTTTCAAAGCTGATCCTCATTAATCTCAATCATGTTGAAAATTAAAAGATGATTGGTCCATGAACTATGATTTGGATAACATATATTGGAAACTGGTGAGAATTCATATTTGAT

mRNA sequence

TGGAAGTTACCCATCAATATCACTATGAAAGCTACCATTCTCCCTCCACATTACACCAACCAGCTTTCCTTCAAAATTATTCATTCGATAAATGACTCATGCCCTTTCCTTCTCTTAATTCCCATCTCCAACCATGGCTTCCAAATCATGGCCTTTTTTTCTAATCTGCCTTGCCTTTCTATTCCCTTCCGCGATCGGCCAGGCCCCGGCACAGCCACCCAGCTTGCCAACCGTCTCCCCACCGCCTTCTACCCCACCTCCGACCGCAACAACTCCTCCACCCTTGTCAACACCACCTCCTACTGTTGCACCTTCTACAAGCCCAACCATTCCACCACCCCAACCACCACAAAGTTCACCCATCTCGCCCCCGTCGCTACCACCAGCATTGCCACCTCCGCGCGCTACGCCTCCGCCATTGCCGCCTCCTTTGCCACCACCACAAGTCTCTCCAACTCCTTCACAGACACCACCGGTGCCAGCTCCCACCCTAGCACCATTACCAACTCCGCCAACACCAATGCCTTCACCACCAACACCAGCACCCGTCGCGGTGCCAGAATTATCCCCTGCACCCGCACCGGGAAAGCATAAGCGTAGGAGGCATCACAAACATAAGAAGCATCAAGCACCGGCCCCGGCCCCAACCGTCCCGAGCCCACCGGCACCACCTACGGTGGTGGATTCACAAGATAGCACAGCGCCAGCACCCTCACCAAATCTGAATGGAGGAGAGCCAATGAAAGGAAAGGTGGGAACATGGACTAGAGTTGTATTCGGATTCACACTTCTGGTTGCTACCACGGGCTTCAATTTCTAATTTTGAAGAGAGGATTATTCACAAGGAACCCATTATGGTTCATAATATTATAGAATTTGGCCCAGAATCTGAGAGAAGTATTTCATATATATCATTTTTTGTTCAATGATTTGTGGATTGGATTGGAATAATAATGAATTTTTTTTTTATTTTGGTAATTAATAATAATCTTCAAGTTTCAAAGCTGATCCTCATTAATCTCAATCATGTTGAAAATTAAAAGATGATTGGTCCATGAACTATGATTTGGATAACATATATTGGAAACTGGTGAGAATTCATATTTGAT

Coding sequence (CDS)

ATGGCTTCCAAATCATGGCCTTTTTTTCTAATCTGCCTTGCCTTTCTATTCCCTTCCGCGATCGGCCAGGCCCCGGCACAGCCACCCAGCTTGCCAACCGTCTCCCCACCGCCTTCTACCCCACCTCCGACCGCAACAACTCCTCCACCCTTGTCAACACCACCTCCTACTGTTGCACCTTCTACAAGCCCAACCATTCCACCACCCCAACCACCACAAAGTTCACCCATCTCGCCCCCGTCGCTACCACCAGCATTGCCACCTCCGCGCGCTACGCCTCCGCCATTGCCGCCTCCTTTGCCACCACCACAAGTCTCTCCAACTCCTTCACAGACACCACCGGTGCCAGCTCCCACCCTAGCACCATTACCAACTCCGCCAACACCAATGCCTTCACCACCAACACCAGCACCCGTCGCGGTGCCAGAATTATCCCCTGCACCCGCACCGGGAAAGCATAAGCGTAGGAGGCATCACAAACATAAGAAGCATCAAGCACCGGCCCCGGCCCCAACCGTCCCGAGCCCACCGGCACCACCTACGGTGGTGGATTCACAAGATAGCACAGCGCCAGCACCCTCACCAAATCTGAATGGAGGAGAGCCAATGAAAGGAAAGGTGGGAACATGGACTAGAGTTGTATTCGGATTCACACTTCTGGTTGCTACCACGGGCTTCAATTTCTAA

Protein sequence

MASKSWPFFLICLAFLFPSAIGQAPAQPPSLPTVSPPPSTPPPTATTPPPLSTPPPTVAPSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPTLAPLPTPPTPMPSPPTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQAPAPAPTVPSPPAPPTVVDSQDSTAPAPSPNLNGGEPMKGKVGTWTRVVFGFTLLVATTGFNF

Homology

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BLAST of Lsi09G010840 vs. Swiss-Prot
Match: AGP19_ARATH (Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana GN=AGP19 PE=2 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 5.1e-18
Identity = 110/253 (43.48%), Postives = 131/253 (51.78%), Query Frame = 1


Query: 6   WPFFLICLAFLFPSAIGQAPAQPP-SLPTVSPPPST--------PPPTATTPP------- 65
           W   L        S   Q PA  P +  T +PPP+T        PPPT TTPP       
Sbjct: 8   WSLLLASALISSFSVNAQGPAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPP 67

Query: 66  -----------PLSTPPPTVAPSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPP 125
                      P S P P VAP  SP  PPPQPPQS P S P++         +PPP+ P
Sbjct: 68  ASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTV---------SPPPVSP 127

Query: 126 PLPPPQVSPTPSQTPPVPA-PTLAPLPTPPTPMPSPPT--PAPVAVPELSPAPAPGKHKR 185
           P  P    PTP+  PP PA P  AP   PP P+  PP   P+P+++P  +PAPAP KHKR
Sbjct: 128 PPAPTSPPPTPASPPPAPASPPPAPASPPPAPVSPPPVQAPSPISLPP-APAPAPTKHKR 187

Query: 186 RRHHKHKKHQ-APAPAPTVPSPPAPPTVVDSQDSTAPAPSPNLNGG---EPMKGKVGTWT 225
           +  HKHK+H  APAPAP  PSPP+PP + D QD TAPAPSPN NGG     +KG+   W 
Sbjct: 188 K--HKHKRHHHAPAPAPIPPSPPSPPVLTDPQD-TAPAPSPNTNGGNALNQLKGRAVMWL 247

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BLAST of Lsi09G010840 vs. TrEMBL
Match: A0A0A0LHJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G115750 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.3e-80
Identity = 192/230 (83.48%), Postives = 201/230 (87.39%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPSLPTVSPPPSTPPPTATTPPPLSTPPPT-VA 60
           MASKSW FF+ICLAFLF S+  QAPAQPPSLPTVSPPP+TPPPT  T PPLSTPPPT VA
Sbjct: 15  MASKSWSFFVICLAFLFSSSFAQAPAQPPSLPTVSPPPTTPPPTVATSPPLSTPPPTVVA 74

Query: 61  PSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPT 120
           PSTSPTIP   PPQSSP+S PSLPPALPPP ATPPPLPPPLPPPQVSPTP  TPPV APT
Sbjct: 75  PSTSPTIP---PPQSSPVSTPSLPPALPPPPATPPPLPPPLPPPQVSPTPLPTPPVLAPT 134

Query: 121 LA--PLPTPPTPMPSPPTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQAPAPAPTVPSPP 180
           LA  PLPTPPTP PSPPTPAPVA PE SPAPAPGKHK RR HKHKKHQAPAPAPTVPSPP
Sbjct: 135 LAPLPLPTPPTPTPSPPTPAPVAAPEPSPAPAPGKHKHRRRHKHKKHQAPAPAPTVPSPP 194

Query: 181 APPTVVDSQDSTAPAPSPNLNGGEPMKGKVGTWTRVVFGFTLLVATTGFN 228
           APPTVVDSQDSTAPAPSP+LNGG+P+K KVG W++V  GF  LVATTGFN
Sbjct: 195 APPTVVDSQDSTAPAPSPDLNGGDPVKRKVGRWSKVGLGFIFLVATTGFN 241

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BLAST of Lsi09G010840 vs. TrEMBL
Match: A0A067FVG5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023867mg PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 143/280 (51.07%), Postives = 167/280 (59.64%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPS-LPTVSPPPST---------PPPTATTPPP 60
           M S  W   L+C  F       Q PA  PS LPT +PPP+T         PPPT T PPP
Sbjct: 1   MDSIFWALILVCSIFPIAITNAQTPAASPSNLPTTTPPPTTAAAPPPTTTPPPTTTAPPP 60

Query: 61  LSTPPPT---------------------------VAPSTSPTIPPPQPPQSSPISPPSLP 120
            +TPPP+                           VAP+TSP++PPPQPPQS PIS PS P
Sbjct: 61  TTTPPPSTTPTAPTQPPVSAATPPPATTPASSPKVAPATSPSVPPPQPPQSPPISTPSQP 120

Query: 121 PALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPTLAP-------LPTPPTPMPSP--- 180
           PALPPP ATPPP    LPPPQVSPTP+Q PP PAP  AP       +  PPTP P+P   
Sbjct: 121 PALPPPPATPPPA---LPPPQVSPTPAQAPPAPAPAKAPPTPAPAPVKAPPTPAPAPVKA 180

Query: 181 ---PTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQ-APAPAPTVPSPPAPPTVVDSQDST 226
              P PAPV++P  +PAPAP KHK++R HKHK+H  APAPAPTVPSPPAPPTV DS+D+T
Sbjct: 181 PPTPAPAPVSLPP-APAPAPPKHKKKRKHKHKRHHHAPAPAPTVPSPPAPPTVPDSEDTT 240

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BLAST of Lsi09G010840 vs. TrEMBL
Match: A0A061ECT3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011899 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.5e-27
Identity = 122/265 (46.04%), Postives = 150/265 (56.60%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPSLP---------------------TVSPPPS 60
           MA  SW   L CL+F       Q PA  PS                       T +PPP+
Sbjct: 1   MAPMSWALILTCLSFQLAITNAQGPAASPSTTPTTITPPSTSPPPPTATPPPSTATPPPT 60

Query: 61  TPP-----------PTATTPPPLSTPPPTVAPSTSPTIPPPQ-PPQSSPISPPSLPPALP 120
           T P           P ATTPPP++TP P VAP+TSPT+PPPQ PP   P +PP+  P  P
Sbjct: 61  TTPPPSTTPTAPAQPPATTPPPVTTPAPKVAPATSPTVPPPQIPPPQPPQTPPTTAPVQP 120

Query: 121 PPRATPPPLPPPLPPPQVSPTPSQTPPVPAPTL-APLPTPPTPMPSPPTPAPVAVPELSP 180
           P  A P   PPP  PP+VSP P+Q PP PAP   AP+   P P   PP  AP+ +P  +P
Sbjct: 121 P--AVP---PPPASPPRVSPAPAQAPPAPAPAKEAPV---PAPAKLPPALAPIILPP-AP 180

Query: 181 APAPGKHKRRRHHKHKKHQAPAPAPTVPSPPAPPTVVDSQDST-APAPSPNLNGGEP--M 229
           APAP KH+RR  H+H++H APAPAPTVPSPPAPPTV  + D+T AP+PS NLNGG+   +
Sbjct: 181 APAPSKHRRRHRHRHRRHHAPAPAPTVPSPPAPPTVPTTDDTTPAPSPSLNLNGGDSLFL 240

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BLAST of Lsi09G010840 vs. TrEMBL
Match: A9PG83_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14250g PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-27
Identity = 120/248 (48.39%), Postives = 142/248 (57.26%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPSLPTVSPPPSTPPPT--------ATTPP--- 60
           MAS  W   L CL+F       Q PA  PS PT + PP T  PT        A TPP   
Sbjct: 1   MASVLWALILACLSFPLAITDAQTPAVSPSTPTTTTPPPTTTPTTPTQSPASAVTPPTAT 60

Query: 61  -PLSTPPPTVAPSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPPPLPPPQVSPT 120
            P+S+P P VAP+T+P +PPPQPPQSSP + P  PPA PPP+ +P P P   PP   +P 
Sbjct: 61  TPISSPSPKVAPATTPVVPPPQPPQSSPAATPIPPPATPPPQVSPAPAPATPPP---APA 120

Query: 121 PSQTPPVPAPTLAPLPTPPTPMPSPPTPAPVAVPELSPAPAPGKHKRRRHHKHK-KHQAP 180
           P++  P PAP   P    P P   PP P+P  VP  SPAPAPGKHK +R HKHK  H AP
Sbjct: 121 PAKEVPAPAPATPPPAPVPAPAIPPPAPSPSLVP--SPAPAPGKHKMKRKHKHKHHHHAP 180

Query: 181 APAPTVPSPPAPPTVVDSQDSTAPAPSPNLNGGEPMKGKVG-------TWTRVVFGFTLL 229
           APAP  PSPPAPPTV  + + TAPAPSP  NGG  +  + G        W R V  F  L
Sbjct: 181 APAPNPPSPPAPPTVTTASEDTAPAPSP--NGGNTLYHQEGRARMWARMWARTVLAFASL 240

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BLAST of Lsi09G010840 vs. TrEMBL
Match: W9R2D8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025822 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 127/269 (47.21%), Postives = 150/269 (55.76%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPS-LPTVSPPPSTPPPTATTPPPLS------T 60
           MAS  W   L C  F       Q+PA  PS LPT +P   T  P A T PP+S      +
Sbjct: 1   MASMFWVLLLSCFIFSVSLNNAQSPAASPSTLPTTTPSSPTVSPVAATQPPVSAATPKSS 60

Query: 61  PPPTVAPSTSPTIPPPQPPQSSPISPPSLPPALP-----PPRATPPPLPPPLPPPQVSPT 120
           P P VAP+ SPT+PPPQ PQSSP+S PS PP++P      P + PPPLPPPLP PQ+SPT
Sbjct: 61  PSPKVAPTVSPTLPPPQTPQSSPVSAPSKPPSVPLQPVAAPVSPPPPLPPPLPAPQISPT 120

Query: 121 PSQTPPVPAP----------------TLAPLPTPPTPMPSP----PTPAPVAVPELSPAP 180
           P Q PP PAP                T APL  PP P P+P    P P PV  P  +PAP
Sbjct: 121 PVQAPPAPAPAKETPAPAPAKEVPVPTPAPLKAPPAPAPAPEIKPPAPEPVLGPSPTPAP 180

Query: 181 APGKHKRRRHHKHKKHQ-----APAPAPTV--PSPPAPPTVVDSQDSTAPAPSPNLNGGE 229
            P KHK R  HKHK+H      APAP PTV   SPPAPPTV +S   TAPAPSP LNGG 
Sbjct: 181 -PHKHKNRHKHKHKRHHHALAPAPAPVPTVVHKSPPAPPTVEESTVDTAPAPSPTLNGGN 240

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BLAST of Lsi09G010840 vs. TAIR10
Match: AT1G68725.1 (AT1G68725.1 arabinogalactan protein 19)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-19
Identity = 110/253 (43.48%), Postives = 131/253 (51.78%), Query Frame = 1


Query: 6   WPFFLICLAFLFPSAIGQAPAQPP-SLPTVSPPPST--------PPPTATTPP------- 65
           W   L        S   Q PA  P +  T +PPP+T        PPPT TTPP       
Sbjct: 8   WSLLLASALISSFSVNAQGPAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPP 67

Query: 66  -----------PLSTPPPTVAPSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPP 125
                      P S P P VAP  SP  PPPQPPQS P S P++         +PPP+ P
Sbjct: 68  ASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTV---------SPPPVSP 127

Query: 126 PLPPPQVSPTPSQTPPVPA-PTLAPLPTPPTPMPSPPT--PAPVAVPELSPAPAPGKHKR 185
           P  P    PTP+  PP PA P  AP   PP P+  PP   P+P+++P  +PAPAP KHKR
Sbjct: 128 PPAPTSPPPTPASPPPAPASPPPAPASPPPAPVSPPPVQAPSPISLPP-APAPAPTKHKR 187

Query: 186 RRHHKHKKHQ-APAPAPTVPSPPAPPTVVDSQDSTAPAPSPNLNGG---EPMKGKVGTWT 225
           +  HKHK+H  APAPAP  PSPP+PP + D QD TAPAPSPN NGG     +KG+   W 
Sbjct: 188 K--HKHKRHHHAPAPAPIPPSPPSPPVLTDPQD-TAPAPSPNTNGGNALNQLKGRAVMWL 247

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BLAST of Lsi09G010840 vs. NCBI nr
Match: gi|778668213|ref|XP_011649058.1| (PREDICTED: lysine-rich arabinogalactan protein 19-like [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 4.7e-80
Identity = 192/230 (83.48%), Postives = 201/230 (87.39%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPSLPTVSPPPSTPPPTATTPPPLSTPPPT-VA 60
           MASKSW FF+ICLAFLF S+  QAPAQPPSLPTVSPPP+TPPPT  T PPLSTPPPT VA
Sbjct: 1   MASKSWSFFVICLAFLFSSSFAQAPAQPPSLPTVSPPPTTPPPTVATSPPLSTPPPTVVA 60

Query: 61  PSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPT 120
           PSTSPTIP   PPQSSP+S PSLPPALPPP ATPPPLPPPLPPPQVSPTP  TPPV APT
Sbjct: 61  PSTSPTIP---PPQSSPVSTPSLPPALPPPPATPPPLPPPLPPPQVSPTPLPTPPVLAPT 120

Query: 121 LA--PLPTPPTPMPSPPTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQAPAPAPTVPSPP 180
           LA  PLPTPPTP PSPPTPAPVA PE SPAPAPGKHK RR HKHKKHQAPAPAPTVPSPP
Sbjct: 121 LAPLPLPTPPTPTPSPPTPAPVAAPEPSPAPAPGKHKHRRRHKHKKHQAPAPAPTVPSPP 180

Query: 181 APPTVVDSQDSTAPAPSPNLNGGEPMKGKVGTWTRVVFGFTLLVATTGFN 228
           APPTVVDSQDSTAPAPSP+LNGG+P+K KVG W++V  GF  LVATTGFN
Sbjct: 181 APPTVVDSQDSTAPAPSPDLNGGDPVKRKVGRWSKVGLGFIFLVATTGFN 227

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BLAST of Lsi09G010840 vs. NCBI nr
Match: gi|700206281|gb|KGN61400.1| (hypothetical protein Csa_2G115750 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 4.7e-80
Identity = 192/230 (83.48%), Postives = 201/230 (87.39%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPSLPTVSPPPSTPPPTATTPPPLSTPPPT-VA 60
           MASKSW FF+ICLAFLF S+  QAPAQPPSLPTVSPPP+TPPPT  T PPLSTPPPT VA
Sbjct: 15  MASKSWSFFVICLAFLFSSSFAQAPAQPPSLPTVSPPPTTPPPTVATSPPLSTPPPTVVA 74

Query: 61  PSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPT 120
           PSTSPTIP   PPQSSP+S PSLPPALPPP ATPPPLPPPLPPPQVSPTP  TPPV APT
Sbjct: 75  PSTSPTIP---PPQSSPVSTPSLPPALPPPPATPPPLPPPLPPPQVSPTPLPTPPVLAPT 134

Query: 121 LA--PLPTPPTPMPSPPTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQAPAPAPTVPSPP 180
           LA  PLPTPPTP PSPPTPAPVA PE SPAPAPGKHK RR HKHKKHQAPAPAPTVPSPP
Sbjct: 135 LAPLPLPTPPTPTPSPPTPAPVAAPEPSPAPAPGKHKHRRRHKHKKHQAPAPAPTVPSPP 194

Query: 181 APPTVVDSQDSTAPAPSPNLNGGEPMKGKVGTWTRVVFGFTLLVATTGFN 228
           APPTVVDSQDSTAPAPSP+LNGG+P+K KVG W++V  GF  LVATTGFN
Sbjct: 195 APPTVVDSQDSTAPAPSPDLNGGDPVKRKVGRWSKVGLGFIFLVATTGFN 241

[Close]

BLAST of Lsi09G010840 vs. NCBI nr
Match: gi|659114696|ref|XP_008457186.1| (PREDICTED: lysine-rich arabinogalactan protein 19 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 1.4e-79
Identity = 193/230 (83.91%), Postives = 199/230 (86.52%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPSLPTVSPPPSTPPPTATTPPPLSTPPPT-VA 60
           MASK W F +ICLAFLF SAI QAPAQPPSLPTVSPPPSTPPPT  TPPPLSTPPPT VA
Sbjct: 15  MASKLWSFSVICLAFLFSSAIAQAPAQPPSLPTVSPPPSTPPPTVPTPPPLSTPPPTVVA 74

Query: 61  PSTSPTIPPPQPPQSSPISPPSLPPALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPT 120
           PSTSP IP   PPQSSP+S PSLPPA PPP ATPPPLPPPLPPPQVSP P  TPPV APT
Sbjct: 75  PSTSPAIP---PPQSSPVSTPSLPPAFPPPPATPPPLPPPLPPPQVSPIPLPTPPVLAPT 134

Query: 121 LAPLPTP--PTPMPSPPTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQAPAPAPTVPSPP 180
           LAPLP P  PTP PSPPTPAPVA PELSPAPAPGKHK RR HKHKKHQAPAPAPTVPSPP
Sbjct: 135 LAPLPLPTSPTPTPSPPTPAPVASPELSPAPAPGKHKHRRRHKHKKHQAPAPAPTVPSPP 194

Query: 181 APPTVVDSQDSTAPAPSPNLNGGEPMKGKVGTWTRVVFGFTLLVATTGFN 228
           APPTVVDSQDSTAPAPSP+L+ G+PMKGKVGTWT+V  GF  LVATTGFN
Sbjct: 195 APPTVVDSQDSTAPAPSPDLSRGDPMKGKVGTWTKVGLGFIFLVATTGFN 241

[Close]

BLAST of Lsi09G010840 vs. NCBI nr
Match: gi|641851274|gb|KDO70145.1| (hypothetical protein CISIN_1g023867mg [Citrus sinensis])

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 143/280 (51.07%), Postives = 167/280 (59.64%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPS-LPTVSPPPST---------PPPTATTPPP 60
           M S  W   L+C  F       Q PA  PS LPT +PPP+T         PPPT T PPP
Sbjct: 1   MDSIFWALILVCSIFPIAITNAQTPAASPSNLPTTTPPPTTAAAPPPTTTPPPTTTAPPP 60

Query: 61  LSTPPPT---------------------------VAPSTSPTIPPPQPPQSSPISPPSLP 120
            +TPPP+                           VAP+TSP++PPPQPPQS PIS PS P
Sbjct: 61  TTTPPPSTTPTAPTQPPVSAATPPPATTPASSPKVAPATSPSVPPPQPPQSPPISTPSQP 120

Query: 121 PALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPTLAP-------LPTPPTPMPSP--- 180
           PALPPP ATPPP    LPPPQVSPTP+Q PP PAP  AP       +  PPTP P+P   
Sbjct: 121 PALPPPPATPPPA---LPPPQVSPTPAQAPPAPAPAKAPPTPAPAPVKAPPTPAPAPVKA 180

Query: 181 ---PTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQ-APAPAPTVPSPPAPPTVVDSQDST 226
              P PAPV++P  +PAPAP KHK++R HKHK+H  APAPAPTVPSPPAPPTV DS+D+T
Sbjct: 181 PPTPAPAPVSLPP-APAPAPPKHKKKRKHKHKRHHHAPAPAPTVPSPPAPPTVPDSEDTT 240

[Close]

BLAST of Lsi09G010840 vs. NCBI nr
Match: gi|568861793|ref|XP_006484384.1| (PREDICTED: lysine-rich arabinogalactan protein 19 [Citrus sinensis])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 142/287 (49.48%), Postives = 167/287 (58.19%), Query Frame = 1


Query: 1   MASKSWPFFLICLAFLFPSAIGQAPAQPPS-LPTVSPPPST----------------PPP 60
           M S  W   L+C  F       Q PA  PS LPT +PPP+T                PPP
Sbjct: 1   MDSIFWALILVCSIFPIAITNAQTPAASPSNLPTTTPPPTTAAAPPPTTTAPPPTTTPPP 60

Query: 61  TATTPPPLSTPPPT---------------------------VAPSTSPTIPPPQPPQSSP 120
           T T PPP++TPPP+                           VAP+TSP++PPPQPPQS P
Sbjct: 61  TTTAPPPMTTPPPSTTPTAPTQPPVSAATPPPATTPVSSPKVAPATSPSVPPPQPPQSPP 120

Query: 121 ISPPSLPPALPPPRATPPPLPPPLPPPQVSPTPSQTPPVPAPTLAP-------LPTPPTP 180
           IS PS PPALPPP ATPPP    LPPPQVSPTP+Q PP PAP  AP       +  PPTP
Sbjct: 121 ISTPSQPPALPPPPATPPPA---LPPPQVSPTPAQAPPAPAPAKAPPTPAPAPVKAPPTP 180

Query: 181 MPSP------PTPAPVAVPELSPAPAPGKHKRRRHHKHKKHQ-APAPAPTVPSPPAPPTV 226
            P+P      P PAP+ +P  +PAPAP KHK++R HKHK+H  APAPAPTVPSPPAPPTV
Sbjct: 181 APAPVKAPPTPAPAPITLPP-APAPAPPKHKKKRKHKHKRHHHAPAPAPTVPSPPAPPTV 240

The following BLAST results are available for this feature:

BLAST of Lsi09G010840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP19_ARATH	5.1e-18	43.48	Lysine-rich arabinogalactan protein 19 OS=Arabidopsis thaliana GN=AGP19 PE=2 SV=...	[more]

BLAST of Lsi09G010840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ4_CUCSA	3.3e-80	83.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G115750 PE=4 SV=1	[more]
A0A067FVG5_CITSI	2.4e-38	51.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023867mg PE=4 SV=1	[more]
A0A061ECT3_THECC	5.5e-27	46.04	Uncharacterized protein OS=Theobroma cacao GN=TCM_011899 PE=4 SV=1	[more]
A9PG83_POPTR	7.2e-27	48.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s14250g PE=2 SV=1	[more]
W9R2D8_9ROSA	8.8e-25	47.21	Uncharacterized protein OS=Morus notabilis GN=L484_025822 PE=4 SV=1	[more]

BLAST of Lsi09G010840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68725.1	2.9e-19	43.48	arabinogalactan protein 19	[more]

BLAST of Lsi09G010840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778668213\|ref\|XP_011649058.1\|	4.7e-80	83.48	PREDICTED: lysine-rich arabinogalactan protein 19-like [Cucumis sativus]	[more]
gi\|700206281\|gb\|KGN61400.1\|	4.7e-80	83.48	hypothetical protein Csa_2G115750 [Cucumis sativus]	[more]
gi\|659114696\|ref\|XP_008457186.1\|	1.4e-79	83.91	PREDICTED: lysine-rich arabinogalactan protein 19 [Cucumis melo]	[more]
gi\|641851274\|gb\|KDO70145.1\|	3.4e-38	51.07	hypothetical protein CISIN_1g023867mg [Citrus sinensis]	[more]
gi\|568861793\|ref\|XP_006484384.1\|	1.7e-37	49.48	PREDICTED: lysine-rich arabinogalactan protein 19 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G010840.1	Lsi09G010840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G010840	Csa2G115750	Cucumber (Chinese Long) v2	culsiB088
Lsi09G010840	CSPI02G08490	Wild cucumber (PI 183967)	cpilsiB086
Lsi09G010840	Cucsa.265780	Cucumber (Gy14) v1	cgylsiB429
Lsi09G010840	ClCG06G008280	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G010840	Bhi12G001227	Wax gourd	lsiwgoB007
Lsi09G010840	CsGy2G008780	Cucumber (Gy14) v2	cgyblsiB081
Lsi09G010840	CsaV3_2G010870	Cucumber (Chinese Long) v3	cuclsiB099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G010840	Cucurbita moschata (Rifu)	cmolsiB251
Lsi09G010840	Cucurbita pepo (Zucchini)	cpelsiB132
Lsi09G010840	Wild cucumber (PI 183967)	cpilsiB090
Lsi09G010840	Cucumber (Chinese Long) v2	culsiB091
Lsi09G010840	Melon (DHL92) v3.5.1	lsimeB023
Lsi09G010840	Watermelon (97103) v1	lsiwmB040
Lsi09G010840	Melon (DHL92) v3.6.1	lsimedB025
Lsi09G010840	Watermelon (97103) v2	lsiwmbB026
Lsi09G010840	Cucumber (Gy14) v1	cgylsiB430
Lsi09G010840	Cucurbita maxima (Rimu)	cmalsiB264