Lsi09G010390 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G010390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCold-shock DNA-binding family protein
Locationchr09 : 15474709 .. 15475281 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCGCAGAAGGGATTTGGGTTCATAGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACCTCCATTCGGTCAGAAGGATTTCGGACTCTTTTCGATGGCCAAGCTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTTGCTGTAATTGGTAGATCTACTGGATATGGAGGAGGTCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTTTGGAAGGTTCGGTGGTAGTGGCCGTGGTTTTGGTAGAGGAGGACGGTACGAAGGCCCAACCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGCCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGGGGAAACGGCGGTGCGCCTCCTGTCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGCTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

mRNA sequence

ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCGCAGAAGGGATTTGGGTTCATAGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACCTCCATTCGGTCAGAAGGATTTCGGACTCTTTTCGATGGCCAAGCTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTTGCTGTAATTGGTAGATCTACTGGATATGGAGGAGGTCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTTTGGAAGGTTCGGTGGTAGTGGCCGTGGTTTTGGTAGAGGAGGACGGTACGAAGGCCCAACCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGCCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGGGGAAACGGCGGTGCGCCTCCTGTCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGCTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Coding sequence (CDS)

ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCGCAGAAGGGATTTGGGTTCATAGCTCCAGATGATGCTGGCGACGATCTTTTTGTCCACCAGACCTCCATTCGGTCAGAAGGATTTCGGACTCTTTTCGATGGCCAAGCTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTTGCTGTAATTGGTAGATCTACTGGATATGGAGGAGGTCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTTTGGAAGGTTCGGTGGTAGTGGCCGTGGTTTTGGTAGAGGAGGACGGTACGAAGGCCCAACCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGCCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGGGGAAACGGCGGTGCGCCTCCTGTCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGCTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Protein sequence

MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDCQNESK
Homology
[Close]
BLAST of Lsi09G010390 vs. Swiss-Prot
Match: CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-40
Identity = 108/195 (55.38%), Postives = 126/195 (64.62%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD GDDLFVHQ+SIRSEGFR+L   +AVEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGG-GGGGR 124
            KA+DV+    +   G   GG  G  G FG  GG G G G GG Y G  GG+GG GGGGR
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFG--GGRGGGRGSGGGYGGGGGGYGGRGGGGR 128

Query: 125 AGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGY-------------GGGGGG 184
            G +CY CG  GH+ARDC  G GG     GGG GYGGG GY             GGGGGG
Sbjct: 129 GGSDCYKCGEPGHMARDCSEGGGG---YGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGG 188

Query: 185 GCYNCGDTGHFARDC 186
            CY+CG++GHFARDC
Sbjct: 189 SCYSCGESGHFARDC 198

[Close]
BLAST of Lsi09G010390 vs. Swiss-Prot
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.7e-38
Identity = 112/211 (53.08%), Postives = 130/211 (61.61%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQR 64
           +R+ GTV+WFS QKGFGFI PDD G+DLFVHQ+ IRSEGFR+L +G+ VEF ++   D R
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 65  AKAVDV-----AVI-------------------GRSTGYGGG-RGGGRGRGGAFGRFGGS 124
            KAVDV     A +                   G S GYGGG RGG RG GG  G +GG 
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 125 GRGFGRGGRYEGPTGGFGGGGGGRAGGE-----CYNCGRMGHLARDCYRGNGGAPPVRGG 184
           G G+G G RY G  GG+GGGGG   GG      C+ CG  GH ARDC +  GG     GG
Sbjct: 127 G-GYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG----GG 186

Query: 185 GRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 186
           GR  GGG   GGGGGGGCY CG+ GHFAR+C
Sbjct: 187 GRFGGGG---GGGGGGGCYKCGEDGHFAREC 209

[Close]
BLAST of Lsi09G010390 vs. Swiss-Prot
Match: CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana GN=CSP4 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.6e-35
Identity = 103/185 (55.68%), Postives = 122/185 (65.95%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D GDDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVAVIGRS--TGYGGGRGGGRGRGGAFGRFGGSGRGFGR-GGRYEGPTGGFGGGGGG 125
           KA++V+    +   G  GG G   GRGG FG  GG GRG GR GG Y G  GG G GG G
Sbjct: 74  KAIEVSGPDGAPVQGNSGGGGSSGGRGG-FG--GGGGRGGGRGGGSYGGGYGGRGSGGRG 133

Query: 126 RAGGE--CYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 185
             GG+  C+ CG  GH+AR+C +G GG     GGGR   GG G GGGGG  CY+CG++GH
Sbjct: 134 GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGH 193

[Close]
BLAST of Lsi09G010390 vs. Swiss-Prot
Match: CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 76/181 (41.99%), Postives = 100/181 (55.25%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD G++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGGGGRAG 125
           KA++V   G               GG+  +   S RG                     +G
Sbjct: 70  KAIEVTAPG---------------GGSLNKKENSSRG---------------------SG 129

Query: 126 GECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 185
           G C+NCG +GH+A+DC   +GG+     GG+ +GGG G   GG G CY CGD GHFARDC
Sbjct: 130 GNCFNCGEVGHMAKDC---DGGS-----GGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 146

Query: 186 Q 187
           +
Sbjct: 190 R 146

[Close]
BLAST of Lsi09G010390 vs. Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.9e-23
Identity = 81/180 (45.00%), Postives = 96/180 (53.33%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD   +LFVHQ+SI SEG+R+L  G AVEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGGGGRAG 125
           KAV+V   G               GG+  +   S    G G R        GGGG G   
Sbjct: 70  KAVNVTAPG---------------GGSLKKENNSR---GNGARR-------GGGGSG--- 129

Query: 126 GECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 185
             CYNCG +GH+++DC  G GG            GG      GG GCYNCGDTGHFARDC
Sbjct: 130 --CYNCGELGHISKDCGIGGGG------------GGGERRSRGGEGCYNCGDTGHFARDC 147

[Close]
BLAST of Lsi09G010390 vs. TrEMBL
Match: A0A0A0KRF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G374720 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.5e-75
Identity = 160/191 (83.77%), Postives = 166/191 (86.91%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAE+KRS+GTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAELKRSTGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           +DQRAKAVDV VI RST YGGGRGGGRGRGG++GRFGG GRGFGRG   EGP+      G
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWNEGPS------G 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYNCGDTG 180
           GGR GGECYNCGRMGHLARDCYRGNGGAP     GR Y GGRGYGGGGGG GCYNCGDTG
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAP----SGRRYDGGRGYGGGGGGRGCYNCGDTG 180

Query: 181 HFARDCQNESK 191
           H ARDCQNESK
Sbjct: 181 HLARDCQNESK 181

[Close]
BLAST of Lsi09G010390 vs. TrEMBL
Match: B9H7B9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15990g PE=4 SV=2)

HSP 1 Score: 208.4 bits (529), Expect = 7.8e-51
Identity = 132/194 (68.04%), Postives = 146/194 (75.26%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAE KRS+GTV+WFSAQKGFGFIAPDD G+DLFVHQTSI+S+GFRTL DGQ VEF++D  
Sbjct: 1   MAETKRSTGTVKWFSAQKGFGFIAPDDGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVDSG 60

Query: 61  EDQRAKAVDVAVIGRS-TGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGG 120
           ED R KAVDV  + +S     GGRGGGRG  G  GR GG   GFGRGGR  G  GG+GGG
Sbjct: 61  EDGRTKAVDVVGVSKSRRPPRGGRGGGRGYYGGGGRGGG---GFGRGGRSSG--GGYGGG 120

Query: 121 ----GGGRAGGECYNCGRMGHLARDCYRGNGGAPPV-RGGGRGYGGGRGYGGGG-GGGCY 180
               GGG  GG C+NCGR GHLARDCY+G+GG      GGGRGY GG G GGGG GGGCY
Sbjct: 121 GYGAGGGGGGGACFNCGRYGHLARDCYQGSGGGGIYGGGGGRGYSGGGGGGGGGRGGGCY 180

Query: 181 NCGDTGHFARDCQN 188
           NCG+ GHFARDC N
Sbjct: 181 NCGEEGHFARDCPN 189

[Close]
BLAST of Lsi09G010390 vs. TrEMBL
Match: W9QN36_9ROSA (Glycine-rich protein 2b OS=Morus notabilis GN=L484_020155 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.1e-47
Identity = 129/203 (63.55%), Postives = 142/203 (69.95%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAE KRS GTV+WFSAQKGFGFIAP D G+DLFVHQTSIRS+GFRTL +GQ VEF ID+ 
Sbjct: 1   MAESKRSMGTVKWFSAQKGFGFIAPYDGGEDLFVHQTSIRSDGFRTLSEGQTVEFAIDHG 60

Query: 61  EDQRAKAVDVAVIGRS----TGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGF 120
           +D R KAVDVA + RS     G G GRGGG G GG  GR GG  R +G G  + G  GG 
Sbjct: 61  DDGRTKAVDVASLARSGLSGPGRGRGRGGGAGSGGR-GRGGGGYRSYGGG--FGGSRGGR 120

Query: 121 --GGGGGGRAGG-------ECYNCGRMGHLARDCYRGNGGAPPVRGGG--RGYGGGRGYG 180
             GGGGGG  GG       ECYNCGR GHLARDCY+G GG     GGG  +  GGGRGYG
Sbjct: 121 SGGGGGGGYYGGVEYYGGVECYNCGRTGHLARDCYQGGGGGGVYSGGGGAKFGGGGRGYG 180

Query: 181 GGGGGGCYNCGDTGHFARDCQNE 189
           GGG  GCYNCG+ GH ARDC N+
Sbjct: 181 GGGSRGCYNCGEEGHLARDCPND 200

[Close]
BLAST of Lsi09G010390 vs. TrEMBL
Match: V4SI43_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002696mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.4e-46
Identity = 119/194 (61.34%), Postives = 133/194 (68.56%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEV+RSSGTV+WFSAQKGFGFIAP+D G+DLFVHQTSI+SEGFRTL +GQ VEF++D  
Sbjct: 1   MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60

Query: 61  EDQRAKAVDVAVIGRSTGYG--GGRGG----GRGRGGAFGRFGGSGRGFGRGGRYEGPTG 120
           ED R KAVDV    RS  +G  GGR G    GRGRGG +GR G  GR             
Sbjct: 61  EDGRTKAVDVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSV----------- 120

Query: 121 GFGGGGGGRAGGECYNCGRMGHLARDCY-RGNGGAPPVRGGGRGYGGGRGYGGGGGGGCY 180
              G GGG   G C+NCGR GH+AR+CY RG       RGGGRGYGGGR     GGGGCY
Sbjct: 121 ---GSGGGAGSGACFNCGRTGHIARECYSRG-------RGGGRGYGGGR-----GGGGCY 168

Query: 181 NCGDTGHFARDCQN 188
           NCG+ GHFARDC N
Sbjct: 181 NCGEEGHFARDCPN 168

[Close]
BLAST of Lsi09G010390 vs. TrEMBL
Match: A0A067GZ79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030905mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.4e-46
Identity = 119/194 (61.34%), Postives = 133/194 (68.56%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEV+RSSGTV+WFSAQKGFGFIAP+D G+DLFVHQTSI+SEGFRTL +GQ VEF++D  
Sbjct: 1   MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60

Query: 61  EDQRAKAVDVAVIGRSTGYG--GGRGG----GRGRGGAFGRFGGSGRGFGRGGRYEGPTG 120
           ED R KAVDV    RS  +G  GGR G    GRGRGG +GR G  GR             
Sbjct: 61  EDGRTKAVDVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSV----------- 120

Query: 121 GFGGGGGGRAGGECYNCGRMGHLARDCY-RGNGGAPPVRGGGRGYGGGRGYGGGGGGGCY 180
              G GGG   G C+NCGR GH+AR+CY RG       RGGGRGYGGGR     GGGGCY
Sbjct: 121 ---GSGGGAGSGACFNCGRTGHIARECYSRG-------RGGGRGYGGGR-----GGGGCY 168

Query: 181 NCGDTGHFARDCQN 188
           NCG+ GHFARDC N
Sbjct: 181 NCGEEGHFARDCPN 168

[Close]
BLAST of Lsi09G010390 vs. TAIR10
Match: AT4G38680.1 (AT4G38680.1 glycine rich protein 2)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-41
Identity = 108/195 (55.38%), Postives = 126/195 (64.62%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD GDDLFVHQ+SIRSEGFR+L   +AVEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGG-GGGGR 124
            KA+DV+    +   G   GG  G  G FG  GG G G G GG Y G  GG+GG GGGGR
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFG--GGRGGGRGSGGGYGGGGGGYGGRGGGGR 128

Query: 125 AGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGY-------------GGGGGG 184
            G +CY CG  GH+ARDC  G GG     GGG GYGGG GY             GGGGGG
Sbjct: 129 GGSDCYKCGEPGHMARDCSEGGGG---YGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGG 188

Query: 185 GCYNCGDTGHFARDC 186
            CY+CG++GHFARDC
Sbjct: 189 SCYSCGESGHFARDC 198

[Close]
BLAST of Lsi09G010390 vs. TAIR10
Match: AT2G21060.1 (AT2G21060.1 glycine-rich protein 2B)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-36
Identity = 103/185 (55.68%), Postives = 122/185 (65.95%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D GDDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVAVIGRS--TGYGGGRGGGRGRGGAFGRFGGSGRGFGR-GGRYEGPTGGFGGGGGG 125
           KA++V+    +   G  GG G   GRGG FG  GG GRG GR GG Y G  GG G GG G
Sbjct: 74  KAIEVSGPDGAPVQGNSGGGGSSGGRGG-FG--GGGGRGGGRGGGSYGGGYGGRGSGGRG 133

Query: 126 RAGGE--CYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 185
             GG+  C+ CG  GH+AR+C +G GG     GGGR   GG G GGGGG  CY+CG++GH
Sbjct: 134 GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGH 193

[Close]
BLAST of Lsi09G010390 vs. TAIR10
Match: AT2G17870.1 (AT2G17870.1 cold shock domain protein 3)

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-25
Identity = 76/181 (41.99%), Postives = 100/181 (55.25%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD G++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGGGGRAG 125
           KA++V   G               GG+  +   S RG                     +G
Sbjct: 70  KAIEVTAPG---------------GGSLNKKENSSRG---------------------SG 129

Query: 126 GECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 185
           G C+NCG +GH+A+DC   +GG+     GG+ +GGG G   GG G CY CGD GHFARDC
Sbjct: 130 GNCFNCGEVGHMAKDC---DGGS-----GGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 146

Query: 186 Q 187
           +
Sbjct: 190 R 146

[Close]
BLAST of Lsi09G010390 vs. TAIR10
Match: AT4G36020.1 (AT4G36020.1 cold shock domain protein 1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-24
Identity = 81/180 (45.00%), Postives = 96/180 (53.33%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD   +LFVHQ+SI SEG+R+L  G AVEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGGGGRAG 125
           KAV+V   G               GG+  +   S    G G R        GGGG G   
Sbjct: 70  KAVNVTAPG---------------GGSLKKENNSR---GNGARR-------GGGGSG--- 129

Query: 126 GECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 185
             CYNCG +GH+++DC  G GG            GG      GG GCYNCGDTGHFARDC
Sbjct: 130 --CYNCGELGHISKDCGIGGGG------------GGGERRSRGGEGCYNCGDTGHFARDC 147

[Close]
BLAST of Lsi09G010390 vs. NCBI nr
Match: gi|659131655|ref|XP_008465791.1| (PREDICTED: cold shock protein 2-like [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 5.7e-79
Identity = 165/191 (86.39%), Postives = 170/191 (89.01%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           +DQRAKAVDV VI RST YGGGRGGGRGRGG++GRFGG GRGFGRG  Y+GP+     GG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPS-----GG 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYNCGDTG 180
           GGR GGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGYGGGGGG GCYNCGDTG
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGYGGGGGGRGCYNCGDTG 180

Query: 181 HFARDCQNESK 191
           HFARDCQNESK
Sbjct: 181 HFARDCQNESK 182

[Close]
BLAST of Lsi09G010390 vs. NCBI nr
Match: gi|449445142|ref|XP_004140332.1| (PREDICTED: cold shock protein 2-like [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 5.0e-75
Identity = 160/191 (83.77%), Postives = 166/191 (86.91%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAE+KRS+GTVRWFSAQKGFGFIAPDDA DDLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAELKRSTGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  EDQRAKAVDVAVIGRSTGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGGG 120
           +DQRAKAVDV VI RST YGGGRGGGRGRGG++GRFGG GRGFGRG   EGP+      G
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWNEGPS------G 120

Query: 121 GGRAGGECYNCGRMGHLARDCYRGNGGAPPVRGGGRGYGGGRGYGGGGGG-GCYNCGDTG 180
           GGR GGECYNCGRMGHLARDCYRGNGGAP     GR Y GGRGYGGGGGG GCYNCGDTG
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAP----SGRRYDGGRGYGGGGGGRGCYNCGDTG 180

Query: 181 HFARDCQNESK 191
           H ARDCQNESK
Sbjct: 181 HLARDCQNESK 181

[Close]
BLAST of Lsi09G010390 vs. NCBI nr
Match: gi|566171675|ref|XP_002307424.2| (hypothetical protein POPTR_0005s15990g [Populus trichocarpa])

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-50
Identity = 132/194 (68.04%), Postives = 146/194 (75.26%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAE KRS+GTV+WFSAQKGFGFIAPDD G+DLFVHQTSI+S+GFRTL DGQ VEF++D  
Sbjct: 1   MAETKRSTGTVKWFSAQKGFGFIAPDDGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVDSG 60

Query: 61  EDQRAKAVDVAVIGRS-TGYGGGRGGGRGRGGAFGRFGGSGRGFGRGGRYEGPTGGFGGG 120
           ED R KAVDV  + +S     GGRGGGRG  G  GR GG   GFGRGGR  G  GG+GGG
Sbjct: 61  EDGRTKAVDVVGVSKSRRPPRGGRGGGRGYYGGGGRGGG---GFGRGGRSSG--GGYGGG 120

Query: 121 ----GGGRAGGECYNCGRMGHLARDCYRGNGGAPPV-RGGGRGYGGGRGYGGGG-GGGCY 180
               GGG  GG C+NCGR GHLARDCY+G+GG      GGGRGY GG G GGGG GGGCY
Sbjct: 121 GYGAGGGGGGGACFNCGRYGHLARDCYQGSGGGGIYGGGGGRGYSGGGGGGGGGRGGGCY 180

Query: 181 NCGDTGHFARDCQN 188
           NCG+ GHFARDC N
Sbjct: 181 NCGEEGHFARDCPN 189

[Close]
BLAST of Lsi09G010390 vs. NCBI nr
Match: gi|743914982|ref|XP_011001432.1| (PREDICTED: glycine-rich protein 2-like [Populus euphratica])

HSP 1 Score: 201.8 bits (512), Expect = 1.0e-48
Identity = 129/199 (64.82%), Postives = 142/199 (71.36%), Query Frame = 1 

Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60
           MAE KRS+G V+WFSAQKGFGFIAPDD G+DLFVHQTSI+S+GFRTL DGQ VEF++D +
Sbjct: 1   MAETKRSTGNVKWFSAQKGFGFIAPDDGGEDLFVHQTSIQSDGFRTLSDGQPVEFSVDSE 60

Query: 61  EDQRAKAVDVAVIGRST-----GYGGGRG--GGRGRGGAFGRFGGSGRGFGRGGRYEGPT 120
           ED R KAVDV    RS      G GGGRG  GGRGRGG          GFGRGGR  G  
Sbjct: 61  EDGRTKAVDVVGASRSRRPPRGGRGGGRGYYGGRGRGGG---------GFGRGGRSNG-- 120

Query: 121 GGFGGGGGGRAGG----ECYNCGRMGHLARDCYRGNGGAPPVRGGG-RGYGGGRGYGGGG 180
           GG+GGGG G  GG     C+NCGR GHLARDCY+G+GG     GGG RGY GG   GGG 
Sbjct: 121 GGYGGGGYGAGGGGGDRACFNCGRYGHLARDCYQGSGGGGIYGGGGRRGYSGGG--GGGR 180

Query: 181 GGGCYNCGDTGHFARDCQN 188
           GGGCYNCG+ GHFARDC N
Sbjct: 181 GGGCYNCGEEGHFARDCPN 186

[Close]
BLAST of Lsi09G010390 vs. NCBI nr
Match: gi|1009136609|ref|XP_015885615.1| (PREDICTED: cold shock protein 2-like [Ziziphus jujuba])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 128/196 (65.31%), Postives = 142/196 (72.45%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDAGDDLFVHQTSIRSEGFRTLFDGQAVEFTIDYDEDQRA 65
           RS+GTV+WFSAQKGFGFIAP+D G+DLFVHQTSIRSEGFRTL +GQ VEF I+Y ED R 
Sbjct: 8   RSTGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIRSEGFRTLSEGQVVEFVINYGEDGRT 67

Query: 66  KAVDVAVIGRS--TGYGGGRG--------GGRGRGGAFGRFGGSGRGFGRGGRYEGPTGG 125
           KAVDVA + RS  +G+G GRG        GGRGR G  G +GG G G+ RGG   G  G 
Sbjct: 68  KAVDVANLTRSHRSGFGRGRGNGGVGSGRGGRGRSG--GGYGGYGGGYSRGG---GGGGR 127

Query: 126 FGGGGGGRAGGECYNCGRMGHLARDCYRGNGGAP-PVRGGGRGYGGGRGYGGGGGGGCYN 185
           FG GGGGR G ECYNCGR+GHLARDCY+G GG     RG GR YGG  G  GGGG GCYN
Sbjct: 128 FGDGGGGRGGAECYNCGRLGHLARDCYQGGGGGGYGARGSGRSYGGRGGGYGGGGRGCYN 187

Query: 186 CGDTGHFARDCQNESK 191
           CG  GH ARDC N+ K
Sbjct: 188 CGAEGHLARDCPNDQK 198

The following BLAST results are available for this feature:
BLAST of Lsi09G010390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CSP2_ARATH2.3e-4055.38Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1[more]
GRP2_NICSY3.7e-3853.08Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1[more]
CSP4_ARATH8.6e-3555.68Cold shock domain-containing protein 4 OS=Arabidopsis thaliana GN=CSP4 PE=1 SV=1[more]
CSP3_ARATH1.8e-2441.99Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1[more]
CSP1_ARATH9.9e-2345.00Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1[more]
BLAST of Lsi09G010390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRF7_CUCSA3.5e-7583.77Uncharacterized protein OS=Cucumis sativus GN=Csa_5G374720 PE=4 SV=1[more]
B9H7B9_POPTR7.8e-5168.04Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15990g PE=4 SV=2[more]
W9QN36_9ROSA3.1e-4763.55Glycine-rich protein 2b OS=Morus notabilis GN=L484_020155 PE=4 SV=1[more]
V4SI43_9ROSI3.4e-4661.34Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002696mg PE=4 SV=1[more]
A0A067GZ79_CITSI3.4e-4661.34Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030905mg PE=4 SV=1[more]
BLAST of Lsi09G010390 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38680.11.3e-4155.38 glycine rich protein 2[more]
AT2G21060.14.8e-3655.68 glycine-rich protein 2B[more]
AT2G17870.11.0e-2541.99 cold shock domain protein 3[more]
AT4G36020.15.6e-2445.00 cold shock domain protein 1[more]
BLAST of Lsi09G010390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131655|ref|XP_008465791.1|5.7e-7986.39PREDICTED: cold shock protein 2-like [Cucumis melo][more]
gi|449445142|ref|XP_004140332.1|5.0e-7583.77PREDICTED: cold shock protein 2-like [Cucumis sativus][more]
gi|566171675|ref|XP_002307424.2|1.1e-5068.04hypothetical protein POPTR_0005s15990g [Populus trichocarpa][more]
gi|743914982|ref|XP_011001432.1|1.0e-4864.82PREDICTED: glycine-rich protein 2-like [Populus euphratica][more]
gi|1009136609|ref|XP_015885615.1|1.4e-4865.31PREDICTED: cold shock protein 2-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR019844Cold-shock_CS
IPR012340NA-bd_OB-fold
IPR011129CSD
IPR002059CSP_DNA-bd
IPR001878Znf_CCHC
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G010390.1Lsi09G010390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 127..188
score: 6.0
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 171..186
score: 1.6E-7coord: 127..141
score: 5.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 171..187
score: 1.3E-5coord: 127..143
score: 2.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 172..187
score: 11.054coord: 128..141
score: 1
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 119..188
score: 1.5
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 30..39
score: 4.2E-11coord: 45..63
score: 4.2E-11coord: 9..24
score: 4.2
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 8..71
score: 6.4
IPR011129Cold shock proteinSMARTSM00357csp_8coord: 8..73
score: 7.3
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 8..72
score: 2.7
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 5..73
score: 1.76
IPR019844Cold-shock conserved sitePROSITEPS00352COLD_SHOCKcoord: 20..39
scor
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 1..187
score: 2.1