ClCG03G009500 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G009500
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCold shock protein-1
LocationCG_Chr03 : 12970459 .. 12971037 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGGTGAAGAGATCGAGCGGGACTGTAAGGTGGTTTAGTGCGCAGAAGGGGTTTGGGTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACCTCTATTCGGTCAGAAGGATTTCGTACTCTTTTCGATGGTCAAACTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTCGCTGTAATTGGTAGATCTACAGAATATGGAGGAGGCCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTATGGAAGGTTCGGTGGTGGTGGTCGTGGTTTTGGCAGAGGAGGACGATACGAAGGTCCAAGCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGGCGGTGGCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGAGGAAACGGCGGTGCGCCTCCTGGCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

mRNA sequence

ATGGCTGAGGTGAAGAGATCGAGCGGGACTGTAAGGTGGTTTAGTGCGCAGAAGGGGTTTGGGTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACCTCTATTCGGTCAGAAGGATTTCGTACTCTTTTCGATGGTCAAACTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTCGCTGTAATTGGTAGATCTACAGAATATGGAGGAGGCCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTATGGAAGGTTCGGTGGTGGTGGTCGTGGTTTTGGCAGAGGAGGACGATACGAAGGTCCAAGCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGGCGGTGGCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGAGGAAACGGCGGTGCGCCTCCTGGCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Coding sequence (CDS)

ATGGCTGAGGTGAAGAGATCGAGCGGGACTGTAAGGTGGTTTAGTGCGCAGAAGGGGTTTGGGTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACCTCTATTCGGTCAGAAGGATTTCGTACTCTTTTCGATGGTCAAACTGTTGAGTTTACCATCGATTATGACGAAGATCAACGCGCCAAAGCCGTCGACGTCGCTGTAATTGGTAGATCTACAGAATATGGAGGAGGCCGTGGAGGCGGGAGAGGTAGAGGTGGTGCTTATGGAAGGTTCGGTGGTGGTGGTCGTGGTTTTGGCAGAGGAGGACGATACGAAGGTCCAAGCGGTGGCTTCGGCGGCGGGGGTGGTGGTCGTGGCGGTGGCGGTGGCGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATCGAGGAAACGGCGGTGCGCCTCCTGGCCGTGGAGGGGGCCGTGGATACGGCGGTGGTCGGGGTTATGGCGGCGGCGGCGGCGGCGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Protein sequence

MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRAKAVDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDCQNESK
Homology
[Close]
BLAST of ClCG03G009500 vs. Swiss-Prot
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.6e-55
Identity = 114/211 (54.03%), Postives = 131/211 (62.09%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQR 64
           +R+ GTV+WFS QKGFGFI PDD  +DLFVHQ+ IRSEGFR+L +G+TVEF ++   D R
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 65  AKAVDV-----AVI-------------------GRSTEYGGG-RGGGRGRGGAYGRFGGG 124
            KAVDV     A +                   G S  YGGG RGG RG GG  G +GGG
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 125 GRGFGRGGRYEGPSGGFGGGGG---GRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGG 184
           G G+G G RY G  GG+GGGGG   G  GGG  C+ CG  GH ARDC +  GG     GG
Sbjct: 127 G-GYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG----GG 186

Query: 185 GRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 188
           GR  GGG   GGGGGGGCY CG+ GHFAR+C
Sbjct: 187 GRFGGGG---GGGGGGGCYKCGEDGHFAREC 209

[Close]
BLAST of ClCG03G009500 vs. Swiss-Prot
Match: CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.4e-54
Identity = 104/193 (53.89%), Postives = 122/193 (63.21%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L   + VEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRG 124
            KA+DV+    +   G   GG  G  G +G  GG G G G GG Y G  GG+GG GGG G
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFG--GGRGGGRGSGGGYGGGGGGYGGRGGG-G 128

Query: 125 GGGGECYNCGRMGHLARDCYRGNGGAPPG----------RGGGRGYGGGRGYGGGGGGGC 184
            GG +CY CG  GH+ARDC  G GG   G           GGG GYGGG   GGGGGG C
Sbjct: 129 RGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSC 188

Query: 185 YNCGDTGHFARDC 188
           Y+CG++GHFARDC
Sbjct: 189 YSCGESGHFARDC 198

[Close]
BLAST of ClCG03G009500 vs. Swiss-Prot
Match: CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana GN=CSP4 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-53
Identity = 105/185 (56.76%), Postives = 123/185 (66.49%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D  DDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGG-GGGGRG 125
           KA++V+         G  GGG   GG  G  GGGGRG GRGG   G  GG+GG G GGRG
Sbjct: 74  KAIEVSG-PDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYG--GGYGGRGSGGRG 133

Query: 126 GGGGE--CYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 185
           GGGG+  C+ CG  GH+AR+C +G GG   G GGGR   GG G GGGGG  CY+CG++GH
Sbjct: 134 GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGH 193

Query: 186 FARDC 188
           FARDC
Sbjct: 194 FARDC 195

[Close]
BLAST of ClCG03G009500 vs. Swiss-Prot
Match: CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 98/212 (46.23%), Postives = 112/212 (52.83%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD  ++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVAVIGRSTEYGGG-----RGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGG--FGG 125
           KA++V      T  GGG         RG GG     G  G         +G SGG  FGG
Sbjct: 70  KAIEV------TAPGGGSLNKKENSSRGSGGNCFNCGEVGH---MAKDCDGGSGGKSFGG 129

Query: 126 GGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGG-----------------RGYG 185
           GGG R GG GECY CG +GH ARDC +  GG   G GGG                 RG  
Sbjct: 130 GGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 189

Query: 186 GGRGYGGG-----GGGGCYNCGDTGHFARDCQ 189
           GG  YGGG     GG GCY CG  GHFARDC+
Sbjct: 190 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCR 212


HSP 2 Score: 87.0 bits (214), Expect = 2.4e-16
Identity = 54/130 (41.54%), Postives = 57/130 (43.85%), Query Frame = 1 

Query: 80  GGGRGGGRG--------------RGGAYGRFGGGGRGFGRGGRYEGPSGGFG-------- 139
           GGG GGGR               RGG+ G   GGG G G GG      GG G        
Sbjct: 154 GGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQ 213

Query: 140 GGGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNC 188
            GGG  GGGG  CY CG +GH+A+ C       P G             GGGGG  CY C
Sbjct: 214 NGGGNVGGGGSTCYTCGGVGHIAKVC---TSKIPSG-------------GGGGGRACYEC 267


HSP 3 Score: 82.4 bits (202), Expect = 5.9e-15
Identity = 53/130 (40.77%), Postives = 54/130 (41.54%), Query Frame = 1 

Query: 79  YGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGG----------------- 138
           YGGG  GGRG GG      GG   F R  R  G  G  GGGG                  
Sbjct: 185 YGGG--GGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGGSTCYTCGGVGHIAKVCTS 244

Query: 139 ----GRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNC 188
               G GGGG  CY CG  GHLARDC R               G G   GGGG   C+ C
Sbjct: 245 KIPSGGGGGGRACYECGGTGHLARDCDR--------------RGSGSSGGGGGSNKCFIC 297

[Close]
BLAST of ClCG03G009500 vs. Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-37
Identity = 89/190 (46.84%), Postives = 99/190 (52.11%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD S +LFVHQ+SI SEG+R+L  G  VEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRST--EYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGG- 125
           KAV+V   G  +  +    RG G  RGG     G G    G  G      G  GGGGGG 
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGG----GSGCYNCGELGHISKDCGIGGGGGGGE 129

Query: 126 -RGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTG 185
            R  GG  CYNCG  GH ARDC               G G  RG   GG  GCY CGD G
Sbjct: 130 RRSRGGEGCYNCGDTGHFARDC------------TSAGNGDQRGATKGGNDGCYTCGDVG 183

Query: 186 HFARDCQNES 192
           H ARDC  +S
Sbjct: 190 HVARDCTQKS 183


HSP 2 Score: 146.7 bits (369), Expect = 2.5e-34
Identity = 92/214 (42.99%), Postives = 106/214 (49.53%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD S +LFVHQ+SI SEG+R+L  G  VEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRST--EYGGGRGGGRGRGGA------------------YGRFGGGGRGFGR 125
           KAV+V   G  +  +    RG G  RGG                    G  GGGG    R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 126 GGR--YE-GPSGGFG------GGGGGRG---GGGGECYNCGRMGHLARDCYRGNGGAPPG 185
           GG   Y  G +G F       G G  RG   GG   CY CG +GH+ARDC + + G    
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN--- 189

Query: 186 RGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 188
                  G  RG   GG  GCY CGD GHFARDC
Sbjct: 190 -------GDQRGAVKGGNDGCYTCGDVGHFARDC 213


HSP 3 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 53/134 (39.55%), Postives = 63/134 (47.01%), Query Frame = 1 

Query: 69  DVAVIGRS-TEYGGGRGGGRG--RGGAYGRFGGGGRG-FGRGGRYEGPSGGFGGGGGGRG 128
           DV  + R  T+   G G  RG  +GG  G +  G  G F R    +  +G    GG    
Sbjct: 171 DVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGG---- 230

Query: 129 GGGGECYNCGRMGHLARDCYRGNGGAPPGRG----GGRGY----GGGRGYGGGGG-GGCY 188
           GG G CY+CG +GH+ARDC        P RG    GG G+       RG GGGG    CY
Sbjct: 231 GGSGTCYSCGGVGHIARDCATKR---QPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACY 290

Query: 189 NCGDTGHFARDCQN 190
            CG  GHFAR+C +
Sbjct: 291 KCGKEGHFARECSS 297


HSP 4 Score: 65.9 bits (159), Expect = 5.7e-10
Identity = 40/111 (36.04%), Postives = 46/111 (41.44%), Query Frame = 1 

Query: 77  TEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRM 136
           T  G G   G  +GG  G +  G  G       +   G     G  +GG  G CY CG +
Sbjct: 148 TSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDG-CYTCGDV 207

Query: 137 GHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 188
           GH ARDC +            +   G    GGGG G CY+CG  GH ARDC
Sbjct: 208 GHFARDCTQ------------KVAAGNVRSGGGGSGTCYSCGGVGHIARDC 245

[Close]
BLAST of ClCG03G009500 vs. TrEMBL
Match: J3P8T1_GAGT3 (Uncharacterized protein OS=Gaeumannomyces graminis var. tritici (strain R3-111a-1) GN=GGTG_09916 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 53/89 (59.55%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 113 SGGFGGGGGGRGGGGG----ECYNCGRMGHLARDCYRG---NGGAPPGRGGGRGYGGGRG 172
           SGG GGGGGG GGGGG    ECY CG +GH+AR+C +     GG   G GGG GY GG G
Sbjct: 77  SGGGGGGGGGGGGGGGQSGAECYKCGEVGHIARNCSKAAGYGGGGGGGYGGGGGYSGGGG 136

Query: 173 YGGGGGGG--CYNCGDTGHFARDCQNESK 193
             GGGGGG  CY+CG  GH +RDC N SK
Sbjct: 137 SYGGGGGGKTCYSCGGIGHMSRDCVNGSK 165

[Close]
BLAST of ClCG03G009500 vs. TrEMBL
Match: J3P8T1_GAGT3 (Uncharacterized protein OS=Gaeumannomyces graminis var. tritici (strain R3-111a-1) GN=GGTG_09916 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.2e-16
Identity = 50/130 (38.46%), Postives = 61/130 (46.92%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAY------------------GRFGGGGRGFGRGGRYEGPSGGFGGGGG 139
           GGG GGG G+ GA                   G  GGGG G+G GG Y G  G +GGGGG
Sbjct: 84  GGGGGGGGGQSGAECYKCGEVGHIARNCSKAAGYGGGGGGGYGGGGGYSGGGGSYGGGGG 143

Query: 140 GRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTG 192
           G+      CY+CG +GH++RDC  G+                          CYNCG+TG
Sbjct: 144 GK-----TCYSCGGIGHMSRDCVNGSK-------------------------CYNCGETG 183


HSP 2 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 48/140 (34.29%), Postives = 57/140 (40.71%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAY------------------GRFGGGGRGFGRGGRYEGPSGGFGGGGG 139
           GGG GGG G+ GA                   G  GGGG G+G GG Y G  G +GGGGG
Sbjct: 84  GGGGGGGGGQSGAECYKCGEVGHIARNCSKAAGYGGGGGGGYGGGGGYSGGGGSYGGGGG 143

Query: 140 GR-----GG---------GGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYG 188
           G+     GG          G +CYNCG  GH +RDC +G+                    
Sbjct: 144 GKTCYSCGGIGHMSRDCVNGSKCYNCGETGHFSRDCPKGS-------------------- 203


HSP 3 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 40/106 (37.74%), Postives = 46/106 (43.40%), Query Frame = 1 

Query: 114 GGFGGGGGGRG----------------GGGGECYNCGRMGHLARDCYRG----------- 173
           G   GGGGGR                  G  +CYNCG  GH++RDC  G           
Sbjct: 6   GAQTGGGGGRACYTCGQPNHQARDCPNRGAAKCYNCGGEGHISRDCPEGQKEQKICYRCS 65

Query: 174 -----NGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 188
                +   P   GGG G GGG G GG  G  CY CG+ GH AR+C
Sbjct: 66  QPGHISRDCPQSGGGGGGGGGGGGGGGQSGAECYKCGEVGHIARNC 111


HSP 4 Score: 105.5 bits (262), Expect = 7.2e-20
Identity = 58/96 (60.42%), Postives = 60/96 (62.50%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFG---GGGGGRGGGGGECYNCGRM 139
           GGGRGGG GRGG  GR GGGGRG G G    G  GG G   GGGGGRGGGGG     GR 
Sbjct: 488 GGGRGGGGGRGGGGGRGGGGGRGGGGGRGGSGARGGGGGGRGGGGGRGGGGGRGGGGGRG 547

Query: 140 GHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGG 173
           G + R    G GG   G GGGRG+GGG G  GGGGG
Sbjct: 548 GGVGRG---GGGGRGGGGGGGRGFGGGGGGRGGGGG 580

[Close]
BLAST of ClCG03G009500 vs. TrEMBL
Match: A0A066XNX3_COLSU (Uncharacterized protein (Fragment) OS=Colletotrichum sublineola GN=CSUB01_06452 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 63/115 (54.78%), Postives = 64/115 (55.65%), Query Frame = 1 

Query: 74  GRSTEYGGGRG-----GGRGRGGAYGRFGGGGRGFGRGGRYEGPSGG--FGGGGGGRGGG 133
           GR    GGGRG     GGRG GG  G  GGGGRGFG GG   G  GG  FGGGGGGRGGG
Sbjct: 557 GRGGGGGGGRGFGGGGGGRGGGGGRGGGGGGGRGFGGGGGGRGGGGGRGFGGGGGGRGGG 616

Query: 134 GGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTG 182
           GG                RG GG   GRGGG G  GGRG+GGGGGGG    G  G
Sbjct: 617 GGGG--------------RGFGGGGGGRGGGGG--GGRGFGGGGGGGGRGFGGGG 655


HSP 2 Score: 102.1 bits (253), Expect = 7.9e-19
Identity = 61/104 (58.65%), Postives = 61/104 (58.65%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHL 139
           GGGRGGG GRGG  GR GGGGRG G GGR         GGGGGRGGGGG     GR G  
Sbjct: 464 GGGRGGGGGRGGGGGRGGGGGRG-GGGGR---------GGGGGRGGGGGRGGGGGRGGGG 523

Query: 140 AR--DCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTG 182
            R     RG GG   G GGGRG GGGRG GGG GGG    G  G
Sbjct: 524 GRGGSGARGGGGGGRGGGGGRGGGGGRGGGGGRGGGVGRGGGGG 557


HSP 3 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 57/94 (60.64%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAYGRFGGGGRGFGRGG-RYEGPSGGFGGGGGGRGGGGGECYNCGRMGH 139
           GGGRGGG GRGG  GR GGGGRG G GG R  G  GG  GGGGGRGGGGG          
Sbjct: 537 GGGRGGGGGRGGGVGRGGGGGRGGGGGGGRGFGGGGGGRGGGGGRGGGGGGG-------- 596

Query: 140 LARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGG 173
                 RG GG     GGGRG GGGRG+GGGGGG
Sbjct: 597 ------RGFGGG----GGGRGGGGGRGFGGGGGG 612


HSP 4 Score: 97.4 bits (241), Expect = 2.0e-17
Identity = 57/102 (55.88%), Postives = 58/102 (56.86%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHL 139
           GGGRGGG GRGG  GR GGGG G G GG      GG  GGGGGRGGGGG     G  G  
Sbjct: 543 GGGRGGGVGRGGGGGRGGGGGGGRGFGG-----GGGGRGGGGGRGGGGG-----GGRGF- 602

Query: 140 ARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTG 182
                 G GG   G GGGRG+GGG G  GGGGGG    G  G
Sbjct: 603 ------GGGGGGRGGGGGRGFGGGGGGRGGGGGGGRGFGGGG 627


HSP 5 Score: 92.8 bits (229), Expect = 4.8e-16
Identity = 54/93 (58.06%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHL 139
           GGGRGGG GRGG  GR GGGGRG G G    G  GG GGGG G GGGGG           
Sbjct: 525 GGGRGGGGGRGGGGGRGGGGGRGGGVGRGGGGGRGGGGGGGRGFGGGGGG---------- 584

Query: 140 ARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGG 173
                RG GG   GRGGG G  GGRG+GGGGGG
Sbjct: 585 -----RGGGG---GRGGGGG--GGRGFGGGGGG 597


HSP 6 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 57/103 (55.34%), Postives = 58/103 (56.31%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAY-------GRFGGGGRGFGRG-GRYEGPSGGFG-GGGGGRGGGGGEC 139
           GGGRGGG GRGG+        GR GGGGRG G G G   G  GG G GGGGGRGGGGG  
Sbjct: 506 GGGRGGGGGRGGSGARGGGGGGRGGGGGRGGGGGRGGGGGRGGGVGRGGGGGRGGGGGGG 565

Query: 140 YNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGG 174
                         RG GG     GGGRG GGGRG GGGGG G
Sbjct: 566 --------------RGFGGG----GGGRGGGGGRGGGGGGGRG 590


HSP 7 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 62/112 (55.36%), Postives = 65/112 (58.04%), Query Frame = 1 

Query: 75  RSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCG 134
           R  E GGGRGGG G GG YG  GGGG   G GG Y G  GG+GGGGGG GGGGG  Y  G
Sbjct: 327 RVPERGGGRGGGGG-GGGYG--GGGGAYGGGGGGYGGGGGGYGGGGGGYGGGGGG-YGGG 386

Query: 135 RMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARD 187
             G      Y G GG+  G GGG G GGG GYGGGGGG     G  G+   D
Sbjct: 387 GGG------YSGGGGSYGGGGGGYG-GGGGGYGGGGGGSYGGRGGGGYGGGD 427

[Close]
BLAST of ClCG03G009500 vs. TrEMBL
Match: F1L056_ASCSU (Protein FAM98A OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.8e-18
Identity = 55/101 (54.46%), Postives = 60/101 (59.41%), Query Frame = 1 

Query: 79  YGGGRGGGRGRGGAYGR----FGGGGRGF-GRGGRYEGPSGGFGGGGGGRGGGGGECY-N 138
           YGGG GG  G GG YG     +GGGG G+ G GG Y G  GG+GGGGGG GGGGG  Y  
Sbjct: 358 YGGGGGGYGGGGGGYGGGGGGYGGGGGGYSGGGGSYGGGGGGYGGGGGGYGGGGGGSYGG 417

Query: 139 CGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGG 174
            G  G+   D Y G+GG   G GGG  YG G  Y GGGG G
Sbjct: 418 RGGGGYGGGDSYGGSGG---GYGGGGNYGSGGAYRGGGGRG 455


HSP 2 Score: 95.1 bits (235), Expect = 9.7e-17
Identity = 56/117 (47.86%), Postives = 60/117 (51.28%), Query Frame = 1 

Query: 74  GRSTEYGGGRGGGRGRGGAYGR----FGGGGRGFGRGGR-YEGPSGGFGGGGGGRGGGGG 133
           G    YGGG GG  G GG YG     +GGGG G+G GG  Y G  G +GGGGGG GGGGG
Sbjct: 346 GGGGAYGGGGGGYGGGGGGYGGGGGGYGGGGGGYGGGGGGYSGGGGSYGGGGGGYGGGGG 405

Query: 134 ECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGG--GGCYNCGDTGHF 184
                          Y G GG   G  GG GYGGG  YGG GG  GG  N G  G +
Sbjct: 406 G--------------YGGGGGGSYGGRGGGGYGGGDSYGGSGGGYGGGGNYGSGGAY 448


HSP 3 Score: 73.2 bits (178), Expect = 4.0e-10
Identity = 49/113 (43.36%), Postives = 53/113 (46.90%), Query Frame = 1 

Query: 81  GGRGGGRGRGGAYGRFG----GGGRGFGRGGRYE--------------GPSGGFGGGGGG 140
           GG GGG G GG YG  G    GGGRG G+   +E              G  GG+GG GGG
Sbjct: 430 GGSGGGYGGGGNYGSGGAYRGGGGRGRGQDTGFENQVMYEYEMANQRGGRGGGYGGQGGG 489

Query: 141 RGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCY 176
            GG GG               Y G GG   G+GG  GYGG RG G GGG G Y
Sbjct: 490 YGGQGGG--------------YGGQGGGYGGQGG--GYGGQRGRGRGGGRGRY 526


HSP 4 Score: 37.4 bits (85), Expect = 2.4e+01
Identity = 18/33 (54.55%), Postives = 20/33 (60.61%), Query Frame = 1 

Query: 74  GRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRG 107
           G+   YGG  GG  G+GG YG   G GRG GRG
Sbjct: 492 GQGGGYGGQGGGYGGQGGGYGGQRGRGRGGGRG 524


HSP 5 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 68/139 (48.92%), Postives = 73/139 (52.52%), Query Frame = 1 

Query: 40  RSEGFRTLFDGQTVEFTIDYDEDQRAKAVDVAVI--GRSTEYGGGRGGGRGRGGAYGRFG 99
           R  GF T+ D    +  I   E      VD   I    + E GGG GGGRG GG  G  G
Sbjct: 11  RGFGFVTMGDADAAKEAI---EKMNGAIVDGRAIRVNEANERGGGGGGGRGGGG--GGRG 70

Query: 100 GGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGR-GG 159
           GGG G+G GG      GG+GGGGGGRGGGGG     G  G   R    G GG   GR GG
Sbjct: 71  GGGGGYGGGG------GGYGGGGGGRGGGGGGYGGGGGGGRGGRG--GGGGGGRGGRGGG 130

Query: 160 GRGYGGGRGYGGGGGGGCY 176
           G GYGGG G GGG GGG Y
Sbjct: 131 GGGYGGGGGGGGGYGGGRY 136

[Close]
BLAST of ClCG03G009500 vs. TrEMBL
Match: A6G232_9DELT (RNA-binding protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_20279 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 38/82 (46.34%), Postives = 39/82 (47.56%), Query Frame = 1 

Query: 104 GRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGG 163
           GR  R    +   GGGGGGRGGGGG                RG GG   G GGG GYGGG
Sbjct: 38  GRAIRVNEANERGGGGGGGRGGGGGG---------------RGGGGGGYGGGGG-GYGGG 97

Query: 164 RGYGGGGGGGCYNCGDTGHFAR 186
            G  GGGGGG    G  G   R
Sbjct: 98  GGGRGGGGGGYGGGGGGGRGGR 103


HSP 2 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 53/103 (51.46%), Postives = 59/103 (57.28%), Query Frame = 1 

Query: 80  GGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRMGHL 139
           GGG GGG G GG  G+ GGGG+G G G        G GGGGGG+GGGGG     G  GH 
Sbjct: 288 GGGGGGGSGHGGGSGQGGGGGKGGGGGS-----GSGHGGGGGGKGGGGG-----GGSGHG 347

Query: 140 ARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 183
                 G GG   G GGG G+GGG G GGGGG G    G++GH
Sbjct: 348 GGSGQGGGGGKGGGGGGGSGHGGGSGQGGGGGKGGGGGGESGH 380

[Close]
BLAST of ClCG03G009500 vs. TAIR10
Match: AT4G38680.1 (AT4G38680.1 glycine rich protein 2)

HSP 1 Score: 211.8 bits (538), Expect = 3.6e-55
Identity = 104/193 (53.89%), Postives = 122/193 (63.21%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQR 64
           +R  G+V+WF  QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L   + VEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRG 124
            KA+DV+    +   G   GG  G  G +G  GG G G G GG Y G  GG+GG GGG G
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFG--GGRGGGRGSGGGYGGGGGGYGGRGGG-G 128

Query: 125 GGGGECYNCGRMGHLARDCYRGNGGAPPG----------RGGGRGYGGGRGYGGGGGGGC 184
            GG +CY CG  GH+ARDC  G GG   G           GGG GYGGG   GGGGGG C
Sbjct: 129 RGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSC 188

Query: 185 YNCGDTGHFARDC 188
           Y+CG++GHFARDC
Sbjct: 189 YSCGESGHFARDC 198

[Close]
BLAST of ClCG03G009500 vs. TAIR10
Match: AT2G21060.1 (AT2G21060.1 glycine-rich protein 2B)

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-54
Identity = 105/185 (56.76%), Postives = 123/185 (66.49%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           R  GTV+WF  QKGFGFI P D  DDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGG-GGGGRG 125
           KA++V+         G  GGG   GG  G  GGGGRG GRGG   G  GG+GG G GGRG
Sbjct: 74  KAIEVSG-PDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYG--GGYGGRGSGGRG 133

Query: 126 GGGGE--CYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGH 185
           GGGG+  C+ CG  GH+AR+C +G GG   G GGGR   GG G GGGGG  CY+CG++GH
Sbjct: 134 GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGH 193

Query: 186 FARDC 188
           FARDC
Sbjct: 194 FARDC 195

[Close]
BLAST of ClCG03G009500 vs. TAIR10
Match: AT2G17870.1 (AT2G17870.1 cold shock domain protein 3)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-41
Identity = 98/212 (46.23%), Postives = 112/212 (52.83%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           RS G V WFS  KG+GFI PDD  ++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVAVIGRSTEYGGG-----RGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGG--FGG 125
           KA++V      T  GGG         RG GG     G  G         +G SGG  FGG
Sbjct: 70  KAIEV------TAPGGGSLNKKENSSRGSGGNCFNCGEVGH---MAKDCDGGSGGKSFGG 129

Query: 126 GGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGG-----------------RGYG 185
           GGG R GG GECY CG +GH ARDC +  GG   G GGG                 RG  
Sbjct: 130 GGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 189

Query: 186 GGRGYGGG-----GGGGCYNCGDTGHFARDCQ 189
           GG  YGGG     GG GCY CG  GHFARDC+
Sbjct: 190 GGNRYGGGGGRGSGGDGCYMCGGVGHFARDCR 212


HSP 2 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 54/130 (41.54%), Postives = 57/130 (43.85%), Query Frame = 1 

Query: 80  GGGRGGGRG--------------RGGAYGRFGGGGRGFGRGGRYEGPSGGFG-------- 139
           GGG GGGR               RGG+ G   GGG G G GG      GG G        
Sbjct: 154 GGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQ 213

Query: 140 GGGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNC 188
            GGG  GGGG  CY CG +GH+A+ C       P G             GGGGG  CY C
Sbjct: 214 NGGGNVGGGGSTCYTCGGVGHIAKVC---TSKIPSG-------------GGGGGRACYEC 267


HSP 3 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 53/130 (40.77%), Postives = 54/130 (41.54%), Query Frame = 1 

Query: 79  YGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGG----------------- 138
           YGGG  GGRG GG      GG   F R  R  G  G  GGGG                  
Sbjct: 185 YGGG--GGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGGSTCYTCGGVGHIAKVCTS 244

Query: 139 ----GRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNC 188
               G GGGG  CY CG  GHLARDC R               G G   GGGG   C+ C
Sbjct: 245 KIPSGGGGGGRACYECGGTGHLARDCDR--------------RGSGSSGGGGGSNKCFIC 297

[Close]
BLAST of ClCG03G009500 vs. TAIR10
Match: AT4G36020.1 (AT4G36020.1 cold shock domain protein 1)

HSP 1 Score: 156.0 bits (393), Expect = 2.3e-38
Identity = 89/190 (46.84%), Postives = 99/190 (52.11%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD S +LFVHQ+SI SEG+R+L  G  VEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRST--EYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGG- 125
           KAV+V   G  +  +    RG G  RGG     G G    G  G      G  GGGGGG 
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGG----GSGCYNCGELGHISKDCGIGGGGGGGE 129

Query: 126 -RGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTG 185
            R  GG  CYNCG  GH ARDC               G G  RG   GG  GCY CGD G
Sbjct: 130 RRSRGGEGCYNCGDTGHFARDC------------TSAGNGDQRGATKGGNDGCYTCGDVG 183

Query: 186 HFARDCQNES 192
           H ARDC  +S
Sbjct: 190 HVARDCTQKS 183


HSP 2 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 92/214 (42.99%), Postives = 106/214 (49.53%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           RS+G V WF+A KG+GFI PDD S +LFVHQ+SI SEG+R+L  G  VEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVAVIGRST--EYGGGRGGGRGRGGA------------------YGRFGGGGRGFGR 125
           KAV+V   G  +  +    RG G  RGG                    G  GGGG    R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 126 GGR--YE-GPSGGFG------GGGGGRG---GGGGECYNCGRMGHLARDCYRGNGGAPPG 185
           GG   Y  G +G F       G G  RG   GG   CY CG +GH+ARDC + + G    
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN--- 189

Query: 186 RGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 188
                  G  RG   GG  GCY CGD GHFARDC
Sbjct: 190 -------GDQRGAVKGGNDGCYTCGDVGHFARDC 213


HSP 3 Score: 74.3 bits (181), Expect = 9.0e-14
Identity = 53/134 (39.55%), Postives = 63/134 (47.01%), Query Frame = 1 

Query: 69  DVAVIGRS-TEYGGGRGGGRG--RGGAYGRFGGGGRG-FGRGGRYEGPSGGFGGGGGGRG 128
           DV  + R  T+   G G  RG  +GG  G +  G  G F R    +  +G    GG    
Sbjct: 171 DVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGG---- 230

Query: 129 GGGGECYNCGRMGHLARDCYRGNGGAPPGRG----GGRGY----GGGRGYGGGGG-GGCY 188
           GG G CY+CG +GH+ARDC        P RG    GG G+       RG GGGG    CY
Sbjct: 231 GGSGTCYSCGGVGHIARDCATKR---QPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACY 290

Query: 189 NCGDTGHFARDCQN 190
            CG  GHFAR+C +
Sbjct: 291 KCGKEGHFARECSS 297


HSP 4 Score: 65.9 bits (159), Expect = 3.2e-11
Identity = 40/111 (36.04%), Postives = 46/111 (41.44%), Query Frame = 1 

Query: 77  TEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGGGECYNCGRM 136
           T  G G   G  +GG  G +  G  G       +   G     G  +GG  G CY CG +
Sbjct: 148 TSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDG-CYTCGDV 207

Query: 137 GHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGGGGCYNCGDTGHFARDC 188
           GH ARDC +            +   G    GGGG G CY+CG  GH ARDC
Sbjct: 208 GHFARDCTQ------------KVAAGNVRSGGGGSGTCYSCGGVGHIARDC 245

[Close]
BLAST of ClCG03G009500 vs. TAIR10
Match: AT4G36230.1 (AT4G36230.1 unknown protein)

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-20
Identity = 64/149 (42.95%), Postives = 71/149 (47.65%), Query Frame = 1 

Query: 27  DASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRAKAVDVAVIGRSTEYGGGRGGG 86
           DAS+  FV+ TS      ++  +  TVEF    D+    K        R+   GGG GGG
Sbjct: 41  DASESNFVNATSSSVLDSKSTANISTVEFENALDDQNVNKTEKCE--SRAGGGGGGGGGG 100

Query: 87  RGRGGAYGRFGGGGRGFGRGGRYEGP--SGGFGGGGGGRGGGGGECYNCGRMGHLARDCY 146
            G GG  G  GGGG G G  G+      +   GGGGGG GGGGG   N    G       
Sbjct: 101 GGGGGGQGSGGGGGEGNGGNGKDNSHKRNKSSGGGGGGGGGGGGGSGNGSGRG------- 160

Query: 147 RGNGGAPPGRGGGRGYGGGRGYGGGGGGG 174
           RG GG   G GGG G GGG G GGGGGGG
Sbjct: 161 RGGGGGGGGGGGGGGGGGGGGGGGGGGGG 180


HSP 2 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 66/186 (35.48%), Postives = 77/186 (41.40%), Query Frame = 1 

Query: 27  DASDDLFVHQTSIRSEGFRTLFDGQTVEF--TIDYDEDQRAKAVDVAVIGRSTEYGGGRG 86
           DAS+  FV+ TS      ++  +  TVEF   +D     + +  +    G     GGG G
Sbjct: 41  DASESNFVNATSSSVLDSKSTANISTVEFENALDDQNVNKTEKCESRAGGGGGGGGGGGG 100

Query: 87  GGRGRG-------------------------GAYGRFGGGGRGFGRG---GRYEGPSGGF 146
           GG G+G                         G  G  GGGG G G G   GR  G  GG 
Sbjct: 101 GGGGQGSGGGGGEGNGGNGKDNSHKRNKSSGGGGGGGGGGGGGSGNGSGRGRGGGGGGGG 160

Query: 147 GGGGGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGYGGGGG--GGC 181
           GGGGGG GGGGG     G  G        G GG   G+GGG G+G G G  G GG  G C
Sbjct: 161 GGGGGGGGGGGG-----GGGG--------GGGGGSDGKGGGWGFGFGWGGDGPGGNFGRC 213

[Close]
BLAST of ClCG03G009500 vs. NCBI nr
Match: gi|645260805|ref|XP_008235991.1| (PREDICTED: glycine-rich protein 2-like [Prunus mume])

HSP 1 Score: 240.0 bits (611), Expect = 3.5e-60
Identity = 125/205 (60.98%), Postives = 141/205 (68.78%), Query Frame = 1 

Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQR 64
           +R SGTV+WF+ QKGFGFI P+D  DDLFVHQ+SIR+EGFRTL DG++VEF I+ D D R
Sbjct: 3   ERLSGTVKWFNDQKGFGFITPNDGGDDLFVHQSSIRTEGFRTLGDGESVEFQIESDSDGR 62

Query: 65  AKAVDVAVIGRST---EYGGGRGGGRGRGGA---YGRFGGGGRGFG-RGGR--------- 124
            KAVDV   G        GGG GGGRGRGG    YG  GGGGRG G RGGR         
Sbjct: 63  TKAVDVTGPGEGPVQGSRGGGGGGGRGRGGGGGGYGFNGGGGRGGGGRGGRGGGGYGGGG 122

Query: 125 YEGPSGGFGGGGG-GRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGY-GGGRGY 184
           Y G  GG+GGGGG G GGGGG C+ CG  GH+ARDC +G  G   G GGG GY GGGRG 
Sbjct: 123 YGGGGGGYGGGGGYGGGGGGGACFKCGESGHMARDCEQGGSGG--GYGGGGGYSGGGRGG 182

Query: 185 GGGGGGGCYNCGDTGHFARDCQNES 192
           GGG  GGCY CG++GHFAR+C N S
Sbjct: 183 GGGSSGGCYGCGESGHFARECPNRS 205

[Close]
BLAST of ClCG03G009500 vs. NCBI nr
Match: gi|950940963|ref|XP_014493304.1| (PREDICTED: cold shock protein 2 [Vigna radiata var. radiata])

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-59
Identity = 117/196 (59.69%), Postives = 139/196 (70.92%), Query Frame = 1 

Query: 8   SGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRAKA 67
           SG V+WF+ QKGFGFI PDD S+DLFVHQ+ I+S+GFR+L +G++VEF I+ D D RAKA
Sbjct: 6   SGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSDGFRSLAEGESVEFAIESDSDGRAKA 65

Query: 68  VDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGGGG 127
           VDV     ++  G  RGG  GRG   GR GGGG G+G GG Y G  GG+GGGG G GGGG
Sbjct: 66  VDVTGPDGASVQGTRRGGDGGRGYGGGRGGGGGGGYG-GGGYGGGGGGYGGGGRGGGGGG 125

Query: 128 GECYNCGRMGHLARDCYRGNGGAPPGRGGGRG--YGGGRG----YGGGGGGG-----CYN 187
           G CYNCG  GHLARDC++G GG   G GGG G  YGGG G    YGGGGGGG     CYN
Sbjct: 126 GACYNCGESGHLARDCFQGGGGDRYGGGGGGGGRYGGGGGGGGRYGGGGGGGGGGGSCYN 185

Query: 188 CGDTGHFARDCQNESK 193
           CG++GHFAR+C   ++
Sbjct: 186 CGESGHFARECPTNAR 200

[Close]
BLAST of ClCG03G009500 vs. NCBI nr
Match: gi|147856673|emb|CAN81359.1| (hypothetical protein VITISV_040408 [Vitis vinifera])

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 123/222 (55.41%), Postives = 141/222 (63.51%), Query Frame = 1 

Query: 4   VKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQ 63
           + R +GTV+WF+ QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L +G+ VEF ++  +D 
Sbjct: 1   MSRVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDG 60

Query: 64  RAKAVDVAVI-------------GRSTEYGGGRGGGRGRGG------AYGRFGGGGRGFG 123
           R KAVDV                GR    GGG GGG G GG       YG  GGGGRG G
Sbjct: 61  RTKAVDVTGPDGNPVQGSRGGGGGRGGRGGGGYGGGGGGGGYGGGGGGYGYNGGGGRGGG 120

Query: 124 RGGRYEG----PSGGFGGGG--------GGRGGGGGECYNCGRMGHLARDCYRGNGGAPP 183
           RGGR  G     SGG+GGGG        GG GGGGG CYNCG  GHLARDC + +GG   
Sbjct: 121 RGGRGGGGGGRSSGGYGGGGYGGGGGYGGGGGGGGGACYNCGEEGHLARDCSQSSGG--- 180

Query: 184 GRGGGR--GYGGGRGYGGGGGGGCYNCGDTGHFARDCQNESK 193
           G GGGR    GGG G GGGGGGGCY CG+ GHFAR+C N ++
Sbjct: 181 GGGGGRYSSGGGGGGGGGGGGGGCYRCGEAGHFARECPNNAR 219

[Close]
BLAST of ClCG03G009500 vs. NCBI nr
Match: gi|356538622|ref|XP_003537800.1| (PREDICTED: cold shock protein 2-like [Glycine max])

HSP 1 Score: 229.6 bits (584), Expect = 4.7e-57
Identity = 118/202 (58.42%), Postives = 141/202 (69.80%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           R SG V+WF+ QKGFGFI PDD S++LFVHQ+ I+S+GFR+L +G++VEF I+ + D RA
Sbjct: 4   RVSGKVKWFNDQKGFGFITPDDGSEELFVHQSQIKSDGFRSLAEGESVEFAIESESDGRA 63

Query: 66  KAVDV------AVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGG 125
           KAVDV      +V G      GGR  G GRGG  G +GGGG G+G GG Y    GG G G
Sbjct: 64  KAVDVTGPDGASVQGTRRGGDGGRSYGGGRGGGGGGYGGGG-GYGGGGGY---GGGGGYG 123

Query: 126 GGGRGGGGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRG--YGGGRG--YGGGGGGG-- 185
           GGGRGGGGG CYNCG  GHLARDC +G GG   G GGG G  YGGG G  YGGGGGGG  
Sbjct: 124 GGGRGGGGGACYNCGESGHLARDCSQGGGGDRYGGGGGGGGRYGGGGGGRYGGGGGGGGG 183

Query: 186 ---CYNCGDTGHFARDCQNESK 193
              CY+CG++GHFARDC + ++
Sbjct: 184 GGSCYSCGESGHFARDCPSSAR 201

[Close]
BLAST of ClCG03G009500 vs. NCBI nr
Match: gi|1021052719|gb|KZN10497.1| (hypothetical protein DCAR_003153 [Daucus carota subsp. sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.8e-56
Identity = 110/199 (55.28%), Postives = 132/199 (66.33%), Query Frame = 1 

Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDEDQRA 65
           R  G+V+WF+  KGFGFI PD+  +DLFVHQ+SI+S+GFR+L +G++VEF I+   D R 
Sbjct: 7   RLKGSVKWFNDTKGFGFITPDEGGEDLFVHQSSIKSDGFRSLAEGESVEFVIENGSDGRT 66

Query: 66  KAVDVAVIGRSTEYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEGPSGGFGGGGGGRGG 125
           KAVDV     ++  G GRGGG G G   G +GGGG G+G GG      GG+GGGGG  GG
Sbjct: 67  KAVDVTGPDGASVQGSGRGGGGGGGRGGGGYGGGGGGYGGGG------GGYGGGGGYGGG 126

Query: 126 GGGECYNCGRMGHLARDCYRGNGGAPPGRGGGRGYGGGRGY------------GGGGGGG 185
           GGG CY CG  GH+ARDC  G GG   G GGG GYGGG GY            GGGGGGG
Sbjct: 127 GGGGCYKCGENGHMARDCDNGGGGGGYG-GGGGGYGGGGGYGGGRGGGRGGGRGGGGGGG 186

Query: 186 CYNCGDTGHFARDCQNESK 193
           CY CG+ GHFARDC N ++
Sbjct: 187 CYQCGEDGHFARDCPNSNR 198

The following BLAST results are available for this feature:
BLAST of ClCG03G009500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GRP2_NICSY7.6e-5554.03Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1[more]
CSP2_ARATH6.4e-5453.89Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1[more]
CSP4_ARATH4.1e-5356.76Cold shock domain-containing protein 4 OS=Arabidopsis thaliana GN=CSP4 PE=1 SV=1[more]
CSP3_ARATH2.4e-4046.23Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1[more]
CSP1_ARATH4.2e-3746.84Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1[more]
BLAST of ClCG03G009500 vs. TrEMBL
Match NameE-valueIdentityDescription
J3P8T1_GAGT36.5e-2159.55Uncharacterized protein OS=Gaeumannomyces graminis var. tritici (strain R3-111a-... [more]
J3P8T1_GAGT38.2e-1638.46Uncharacterized protein OS=Gaeumannomyces graminis var. tritici (strain R3-111a-... [more]
A0A066XNX3_COLSU2.7e-1954.78Uncharacterized protein (Fragment) OS=Colletotrichum sublineola GN=CSUB01_06452 ... [more]
F1L056_ASCSU8.8e-1854.46Protein FAM98A OS=Ascaris suum PE=2 SV=1[more]
A6G232_9DELT5.9e-0646.34RNA-binding protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_20279 PE=4 SV=1[more]
BLAST of ClCG03G009500 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38680.13.6e-5553.89 glycine rich protein 2[more]
AT2G21060.12.3e-5456.76 glycine-rich protein 2B[more]
AT2G17870.11.3e-4146.23 cold shock domain protein 3[more]
AT4G36020.12.3e-3846.84 cold shock domain protein 1[more]
AT4G36230.13.8e-2042.95 unknown protein[more]
BLAST of ClCG03G009500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|645260805|ref|XP_008235991.1|3.5e-6060.98PREDICTED: glycine-rich protein 2-like [Prunus mume][more]
gi|950940963|ref|XP_014493304.1|1.3e-5959.69PREDICTED: cold shock protein 2 [Vigna radiata var. radiata][more]
gi|147856673|emb|CAN81359.1|1.2e-5755.41hypothetical protein VITISV_040408 [Vitis vinifera][more]
gi|356538622|ref|XP_003537800.1|4.7e-5758.42PREDICTED: cold shock protein 2-like [Glycine max][more]
gi|1021052719|gb|KZN10497.1|1.8e-5655.28hypothetical protein DCAR_003153 [Daucus carota subsp. sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR002059CSP_DNA-bd
IPR011129CSD
IPR012340NA-bd_OB-fold
IPR019844Cold-shock_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0051555 flavonol biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0045431 flavonol synthase activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G009500.1ClCG03G009500.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 129..190
score: 1.0
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 173..188
score: 1.6E-7coord: 129..143
score: 5.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 129..145
score: 2.7E-4coord: 173..189
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 174..189
score: 11.054coord: 130..143
score: 1
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 155..189
score: 8.37E-7coord: 111..144
score: 3.0
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 45..63
score: 2.3E-11coord: 30..39
score: 2.3E-11coord: 9..24
score: 2.3
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 8..71
score: 5.3
IPR011129Cold shock proteinSMARTSM00357csp_8coord: 8..73
score: 7.1
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 8..72
score: 2.8
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 5..73
score: 2.36
IPR019844Cold-shock conserved sitePROSITEPS00352COLD_SHOCKcoord: 20..39
scor
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 1..189
score: 1.6