Lsi09G009990 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G009990
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSenescence-associated protein, putative
Locationchr09 : 13616348 .. 13618995 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTTGGGTGTCACGACACACAAGAGGTCGGTGTCATGGTACACACAGGGTGGTTGTCCCAGGTGGGTGTCACGACACATTCTTTAGACAAAATAGGTAATGTTTTGTTGGAACGATCATTTTACGACTGTTAGTTCATAACACAAATTTCAATATAACACAATACAAACACCATAAGTTAGTTATACGTTCAACGTTGGGTGTATGATTAATGTGTGGCATTGATGGACTAGATAGTCAAGCTTAAATATTATTAGACTACACAATGGTTCACTTCAACAATGTGCGACTGCAAAGCCAGTCTACTTGATATACACTCGACTTGATACGCGGAGAGGTGCAAGGTGGGTGAGCAGGCGCGGGGGTGGGGCAGGTGGGCATGGGCGCCCACAGAGTGCAAGATTGGTGGGCATGGGGCGCGCGTGGGTTGGGCAAGGTGGGCATGGCATTGAGCAGGTGCGGGGCTGGGTGGGCATGGGATGCGTGCGGGGTGGGCATGGGGGGTGCCGGTGAGGTGGAGCTGGGTGGGCGCGCAGGGTGCAAGGTGGGTGGGCATGGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCCCATGCAAGCACATCCACTCGCCAACACTTAGGCTTTCTTTTCTTTCTACTTAGCATATAACCTCTATGACACTTGAAATAAATAAATGAGTTGTGTGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGAAATTACGTTACAAGGCGGCCCCCGCGACTCATCCGTCACGAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGGACGGCCCCTACTGCTGGTCGGCAATCGAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

mRNA sequence

ATGGGTGTTGGGTGTCACGACACACAAGAGGTCGGTGTCATGGTACACACAGGGTGGTTGTCCCAGGTGGGTGTCACGACACATTCTTTAGACAAAATAGTCTACTTGATATACACTCGACTTGATACGCGGAGAGGTGCAAGGTGGGTGAGCAGGCGCGGGGGTGGGGCAGGTGGGCATGGGCGCCCACAGAGTGCAAGATTGGTGGGCATGGGGCGCGCGTGGGTTGGGCAAGGTGGGCATGGCATTGAGCAGGTGCGGGGCTGGGTGGGCATGGGATGCGTGCGGGGTGGGCATGGGGGGTGCCGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGAAATTACGTTACAAGGCGGCCCCCGCGACTCATCCGTCACGAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGGACGGCCCCTACTGCTGGTCGGCAATCGAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Coding sequence (CDS)

ATGGGTGTTGGGTGTCACGACACACAAGAGGTCGGTGTCATGGTACACACAGGGTGGTTGTCCCAGGTGGGTGTCACGACACATTCTTTAGACAAAATAGTCTACTTGATATACACTCGACTTGATACGCGGAGAGGTGCAAGGTGGGTGAGCAGGCGCGGGGGTGGGGCAGGTGGGCATGGGCGCCCACAGAGTGCAAGATTGGTGGGCATGGGGCGCGCGTGGGTTGGGCAAGGTGGGCATGGCATTGAGCAGGTGCGGGGCTGGGTGGGCATGGGATGCGTGCGGGGTGGGCATGGGGGGTGCCGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCGTATTTAAGTCGTCTGCAAAGGATTCTACCCGTCGCTCGGTGGAAATTACGTTACAAGGCGGCCCCCGCGACTCATCCGTCACGAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGGACGGCCCCTACTGCTGGTCGGCAATCGAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Protein sequence

MGVGCHDTQEVGVMVHTGWLSQVGVTTHSLDKIVYLIYTRLDTRRGARWVSRRGGGAGGHGRPQSARLVGMGRAWVGQGGHGIEQVRGWVGMGCVRGGHGGCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Homology
[Close]
BLAST of Lsi09G009990 vs. TrEMBL
Match: I1LXT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.7e-41
Identity = 87/108 (80.56%), Postives = 91/108 (84.26%), Query Frame = 1 

Query: 110 RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGA 169
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+LR+KA+   +P     QRHVPLG 
Sbjct: 80  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 139

Query: 170 GRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 218
             PLLLVG R  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 140 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 187

[Close]
BLAST of Lsi09G009990 vs. TrEMBL
Match: I1LXQ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.7e-41
Identity = 87/108 (80.56%), Postives = 91/108 (84.26%), Query Frame = 1 

Query: 110 RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGA 169
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+LR+KA+   +P     QRHVPLG 
Sbjct: 81  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 140

Query: 170 GRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 218
             PLLLVG R  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 141 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 188

[Close]
BLAST of Lsi09G009990 vs. TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.7e-41
Identity = 87/108 (80.56%), Postives = 91/108 (84.26%), Query Frame = 1 

Query: 110   RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGA 169
             RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+LR+KA+   +P     QRHVPLG 
Sbjct: 14197 RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 14256

Query: 170   GRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 218
               PLLLVG R  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 14257 RGPLLLVGKRTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 14304

[Close]
BLAST of Lsi09G009990 vs. TrEMBL
Match: A0A0P6CHZ2_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.1e-32
Identity = 74/91 (81.32%), Postives = 76/91 (83.52%), Query Frame = 1 

Query: 136 QRILPVARWKLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEA 195
           QRILP ARW+L + AA A  P RGL QRHVPLGA  PLL VGNRA GA VASSPDSDLEA
Sbjct: 60  QRILPAARWELYFMAAHAARPPRGLGQRHVPLGARGPLLRVGNRAAGARVASSPDSDLEA 119

Query: 196 FSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 227
           FSHNPAHGSFAPLAFQPSAMT C NQRFLSY
Sbjct: 120 FSHNPAHGSFAPLAFQPSAMTKCVNQRFLSY 150

[Close]
BLAST of Lsi09G009990 vs. TrEMBL
Match: W1PVN2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00191p00039450 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.6e-29
Identity = 82/141 (58.16%), Postives = 84/141 (59.57%), Query Frame = 1 

Query: 97  GGHGGCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAP---- 156
           GG  G  DES R RAESQWIV ARPLCHL YPVAYLSRLQRILP A+  L  K  P    
Sbjct: 10  GGEWGGGDESLRHRAESQWIVTARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSAS 69

Query: 157 -------ATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSF 216
                   T P R  +Q         P     N   G     S DSDLEAFSHNPAHGSF
Sbjct: 70  TVVAFTNDTSPWRVRAQ---------PYCGSANGQRGQAPLPSLDSDLEAFSHNPAHGSF 129

Query: 217 APLAFQPSAMTNCANQRFLSY 227
           APLAFQPSAMT C NQ FLSY
Sbjct: 130 APLAFQPSAMTICLNQWFLSY 141

[Close]
BLAST of Lsi09G009990 vs. NCBI nr
Match: gi|548854219|gb|ERN12143.1| (hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda])

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 82/141 (58.16%), Postives = 84/141 (59.57%), Query Frame = 1 

Query: 97  GGHGGCRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAP---- 156
           GG  G  DES R RAESQWIV ARPLCHL YPVAYLSRLQRILP A+  L  K  P    
Sbjct: 10  GGEWGGGDESLRHRAESQWIVTARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSAS 69

Query: 157 -------ATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSF 216
                   T P R  +Q         P     N   G     S DSDLEAFSHNPAHGSF
Sbjct: 70  TVVAFTNDTSPWRVRAQ---------PYCGSANGQRGQAPLPSLDSDLEAFSHNPAHGSF 129

Query: 217 APLAFQPSAMTNCANQRFLSY 227
           APLAFQPSAMT C NQ FLSY
Sbjct: 130 APLAFQPSAMTICLNQWFLSY 141

[Close]
BLAST of Lsi09G009990 vs. NCBI nr
Match: gi|954297013|gb|KRX86393.1| (hypothetical protein T12_13365, partial [Trichinella patagoniensis])

HSP 1 Score: 120.2 bits (300), Expect = 4.8e-24
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 167 LGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 226
           LGAGRPLL VGNRA GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 1   LGAGRPLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 60

[Close]
BLAST of Lsi09G009990 vs. NCBI nr
Match: gi|966068351|gb|KTE89979.1| (hypothetical protein AT727_24830 [Desulfitobacterium hafniense])

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 56/60 (93.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 167 LGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 226
           LG  RPLL VGNRA GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 13  LGGQRPLLRVGNRATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 72

[Close]
BLAST of Lsi09G009990 vs. NCBI nr
Match: gi|922327141|ref|XP_013442963.1| (senescence-associated protein, putative [Medicago truncatula])

HSP 1 Score: 113.2 bits (282), Expect = 5.8e-22
Identity = 54/74 (72.97%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 145 KLRYKAAPATHPSRGLSQRHVPLGAGRPLLLVGNRAMGACVASSPDSDLEAFSHNPAHGS 204
           KLR+K +   HP  G+ QRHVPLG   PLLLVG R  G  +ASSPDSDLEAFSHNP HGS
Sbjct: 25  KLRFKVSRKAHPPYGVHQRHVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGS 84

Query: 205 FAPLAFQPSAMTNC 219
           FAPLAFQPSAMTNC
Sbjct: 85  FAPLAFQPSAMTNC 98

[Close]
BLAST of Lsi09G009990 vs. NCBI nr
Match: gi|947015817|gb|KRG68575.1| (hypothetical protein GLYMA_U007400 [Glycine max])

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 52/72 (72.22%), Postives = 56/72 (77.78%), Query Frame = 1 

Query: 110 RAESQWIVAARPLCHLQYPVAYLSRLQRILPVARWKLRYKAAPATHPSRGLSQRHVPLGA 169
           RAESQWIVAARPLCHLQYPVAYLSRLQRILP ARW+LR+KA+   +P     QRHVPLG 
Sbjct: 45  RAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGG 104

Query: 170 GRPLLLVGNRAM 182
             PLLLV    M
Sbjct: 105 RGPLLLVVRERM 116

The following BLAST results are available for this feature:
BLAST of Lsi09G009990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G009990 vs. TrEMBL
Match NameE-valueIdentityDescription
I1LXT0_SOYBN8.7e-4180.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1LXQ4_SOYBN8.7e-4180.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1LXS9_SOYBN8.7e-4180.56Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0P6CHZ2_9CRUS1.1e-3281.32Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1[more]
W1PVN2_AMBTC7.6e-2958.16Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00191p00039450 PE=4 SV=... [more]
BLAST of Lsi09G009990 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G009990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548854219|gb|ERN12143.1|1.1e-2858.16hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda][more]
gi|954297013|gb|KRX86393.1|4.8e-2496.67hypothetical protein T12_13365, partial [Trichinella patagoniensis][more]
gi|966068351|gb|KTE89979.1|1.2e-2293.33hypothetical protein AT727_24830 [Desulfitobacterium hafniense][more]
gi|922327141|ref|XP_013442963.1|5.8e-2272.97senescence-associated protein, putative [Medicago truncatula][more]
gi|947015817|gb|KRG68575.1|1.2e-1972.22hypothetical protein GLYMA_U007400 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G009990.1Lsi09G009990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047FAMILY NOT NAMEDcoord: 110..217
score: 5.2
NoneNo IPR availablePANTHERPTHR33047:SF4SUBFAMILY NOT NAMEDcoord: 110..217
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G009990CmoCh15G010570Cucurbita moschata (Rifu)cmolsiB257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None