CmoCh15G010570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G010570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Senescence-associated protein, putative
Location	Cmo_Chr15 : 6880424 .. 6881454 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGGAGCGTGCGCGCGCACGGGATGTGTGCGGTGGGCGTGCGGGGGCGCGGTCGGGGGCGTGTGCGGGGGGAGGGCGCGGGAGGTGTGCTGGTTAGCCTCCAAGGGTTTTGGGTGTAGATTTTTCATAGAGGTTAACCTCCCAGGGTTTTGTGGCTAGCACGCGTGCCGCTTTTATAGTGGGCATGTAGGCAAGAGTGAACATGGACTTGGACTTGGACTTGCGCTTGCGTTGGGTTGGTGTTGGCGGGCATGATGTGCGCGCAAGGATGAGAGGGGCGTTGGTGCAGGGGCGGGGCTTGGCGCGCATGCGACTCAAGGTCACGTAGGGCGCACGTGCACGACAACAAGCAGGGCACCTGGGCCAGATTGGGGAGCAGGACCAGCAGTGGCGCACGCACGAGGGCCAACATTGGCGCCCATGATCATCCCTTGGCCATAGGCCTTAGCGTGCACACGAGCGCTCAGGCCATGCTCCCACCCATGCATCATTCTCATTACCACCTGAACCCACACCAACCCAACTCACGCATGCATTTTAAATGGCCTTGCATTGGAGAATGTCCAACCAACAACACTTAACATGTAAAATCGTTACTTTGCGTATAACCTCCATGACACTTCAAATAAATAAATTATTTATTTGTGTGGGGAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCATCGCTCAGTGGGAATTACGTTACAAGGCAGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

mRNA sequence

ATGGGGGGGAGCGTGCGCGCGCACGGGATGTGTGCGGTGGGCGTGCGGGGGCGCGGTCGGGGGCGTGTGCGGGGGGAGGGCGCGGGAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCATCGCTCAGTGGGAATTACGTTACAAGGCAGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Coding sequence (CDS)

ATGGGGGGGAGCGTGCGCGCGCACGGGATGTGTGCGGTGGGCGTGCGGGGGCGCGGTCGGGGGCGTGTGCGGGGGGAGGGCGCGGGAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTCTACCCATCGCTCAGTGGGAATTACGTTACAAGGCAGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCAAAAGGCCCCTACTGCTGGTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG

Homology

[Close]

BLAST of CmoCh15G010570 vs. TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-36
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 30    ARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAKRPLLLVGN 89
             ARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG + PLLLVG 
Sbjct: 14206 ARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGGRGPLLLVGK 14265

Query: 90    QAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 129
             +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 14266 RTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 14304

[Close]

BLAST of CmoCh15G010570 vs. TrEMBL
Match: I1LXT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-36
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 30  ARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAKRPLLLVGN 89
           ARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG + PLLLVG 
Sbjct: 89  ARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGGRGPLLLVGK 148

Query: 90  QAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 129
           +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 149 RTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 187

[Close]

BLAST of CmoCh15G010570 vs. TrEMBL
Match: I1LXQ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-36
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 30  ARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAKRPLLLVGN 89
           ARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG + PLLLVG 
Sbjct: 90  ARPLCHLQYPVAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGGRGPLLLVGK 149

Query: 90  QAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTN 129
           +  GA VASSPDSDLEAFSHNP HGSFAPLAFQPSAMTN
Sbjct: 150 RTAGARVASSPDSDLEAFSHNPTHGSFAPLAFQPSAMTN 188

[Close]

BLAST of CmoCh15G010570 vs. TrEMBL
Match: A0A0P6CHZ2_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.6e-32
Identity = 71/91 (78.02%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 47  QRILPIAQWELRYKAALETHPSQGLSQRHVPLGAKRPLLLVGNQAMGACVASSPDSDLEA 106
           QRILP A+WEL + AA    P +GL QRHVPLGA+ PLL VGN+A GA VASSPDSDLEA
Sbjct: 60  QRILPAARWELYFMAAHAARPPRGLGQRHVPLGARGPLLRVGNRAAGARVASSPDSDLEA 119

Query: 107 FSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 138
           FSHNPAHGSFAPLAFQPSAMT C NQRFLSY
Sbjct: 120 FSHNPAHGSFAPLAFQPSAMTKCVNQRFLSY 150

[Close]

BLAST of CmoCh15G010570 vs. TrEMBL
Match: A0A0V0XEH6_9BILA (Uncharacterized protein (Fragment) OS=Trichinella patagoniensis GN=T12_13365 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-23
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 78  LGAKRPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 137
           LGA RPLL VGN+A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 1   LGAGRPLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 60

[Close]

BLAST of CmoCh15G010570 vs. NCBI nr
Match: gi|954297013|gb|KRX86393.1| (hypothetical protein T12_13365, partial [Trichinella patagoniensis])

HSP 1 Score: 115.9 bits (289), Expect = 5.4e-23
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 78  LGAKRPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 137
           LGA RPLL VGN+A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 1   LGAGRPLLRVGNRAAGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 60

[Close]

BLAST of CmoCh15G010570 vs. NCBI nr
Match: gi|966068351|gb|KTE89979.1| (hypothetical protein AT727_24830 [Desulfitobacterium hafniense])

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-23
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 78  LGAKRPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 137
           LG +RPLL VGN+A GACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
Sbjct: 13  LGGQRPLLRVGNRATGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 72

[Close]

BLAST of CmoCh15G010570 vs. NCBI nr
Match: gi|922327141|ref|XP_013442963.1| (senescence-associated protein, putative [Medicago truncatula])

HSP 1 Score: 113.2 bits (282), Expect = 3.5e-22
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1


Query: 56  ELRYKAALETHPSQGLSQRHVPLGAKRPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGS 115
           +LR+K + + HP  G+ QRHVPLG + PLLLVG +  G  +ASSPDSDLEAFSHNP HGS
Sbjct: 25  KLRFKVSRKAHPPYGVHQRHVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGS 84

Query: 116 FAPLAFQPSAMTNC 130
           FAPLAFQPSAMTNC
Sbjct: 85  FAPLAFQPSAMTNC 98

[Close]

BLAST of CmoCh15G010570 vs. NCBI nr
Match: gi|548854219|gb|ERN12143.1| (hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda])

HSP 1 Score: 109.4 bits (272), Expect = 5.1e-21
Identity = 65/113 (57.52%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 30  ARPLCHLQYPVAYLSRLQRILPIAQW-----ELRYKAALETHPSQGLSQRHVPLGAKRPL 89
           ARPLCHL YPVAYLSRLQRILP AQ      E+ + A+     +   S   V     +P 
Sbjct: 32  ARPLCHLHYPVAYLSRLQRILPTAQRVLHCKEIPHSASTVVAFTNDTSPWRV---RAQPY 91

Query: 90  LLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY 138
               N   G     S DSDLEAFSHNPAHGSFAPLAFQPSAMT C NQ FLSY
Sbjct: 92  CGSANGQRGQAPLPSLDSDLEAFSHNPAHGSFAPLAFQPSAMTICLNQWFLSY 141

[Close]

BLAST of CmoCh15G010570 vs. NCBI nr
Match: gi|922327157|ref|XP_013442971.1| (senescence-associated protein, putative, partial [Medicago truncatula])

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1


Query: 66  HPSQGLSQRHVPLGAKRPLLLVGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSA 125
           HP   + QRHVPLG + PLLLVG +  G  +ASSPDSDLEAFSHNP HGSFAPLAFQPSA
Sbjct: 38  HPPYAVHQRHVPLGGQGPLLLVGKRTTGTRIASSPDSDLEAFSHNPTHGSFAPLAFQPSA 97

Query: 126 MTNC 130
           MTNC
Sbjct: 98  MTNC 101

The following BLAST results are available for this feature:

BLAST of CmoCh15G010570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G010570 vs. TrEMBL


Match Name	E-value	Identity	Description
I1LXS9_SOYBN	5.1e-36	77.78	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
I1LXT0_SOYBN	5.1e-36	77.78	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
I1LXQ4_SOYBN	5.1e-36	77.78	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0P6CHZ2_9CRUS	7.6e-32	78.02	Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1	[more]
A0A0V0XEH6_9BILA	3.8e-23	93.33	Uncharacterized protein (Fragment) OS=Trichinella patagoniensis GN=T12_13365 PE=...	[more]

BLAST of CmoCh15G010570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G010570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|954297013\|gb\|KRX86393.1\|	5.4e-23	93.33	hypothetical protein T12_13365, partial [Trichinella patagoniensis]	[more]
gi\|966068351\|gb\|KTE89979.1\|	7.1e-23	91.67	hypothetical protein AT727_24830 [Desulfitobacterium hafniense]	[more]
gi\|922327141\|ref\|XP_013442963.1\|	3.5e-22	70.27	senescence-associated protein, putative [Medicago truncatula]	[more]
gi\|548854219\|gb\|ERN12143.1\|	5.1e-21	57.52	hypothetical protein AMTR_s00191p00039450 [Amborella trichopoda]	[more]
gi\|922327157\|ref\|XP_013442971.1\|	2.1e-19	75.00	senescence-associated protein, putative, partial [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G010570.1	CmoCh15G010570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047	FAMILY NOT NAMED	coord: 30..128 score: 7.2
None	No IPR available	PANTHER	PTHR33047:SF4	SUBFAMILY NOT NAMED	coord: 30..128 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G010570	Lsi09G009990	Bottle gourd (USVL1VR-Ls)	cmolsiB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G010570	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G010570	Cucurbita maxima (Rimu)	cmacmoB584
CmoCh15G010570	Wild cucumber (PI 183967)	cmocpiB303
CmoCh15G010570	Cucumber (Chinese Long) v2	cmocuB279
CmoCh15G010570	Cucumber (Chinese Long) v2	cmocuB293
CmoCh15G010570	Melon (DHL92) v3.5.1	cmomeB242
CmoCh15G010570	Watermelon (Charleston Gray)	cmowcgB243
CmoCh15G010570	Watermelon (97103) v1	cmowmB242
CmoCh15G010570	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G010570	Cucurbita pepo (Zucchini)	cmocpeB293
CmoCh15G010570	Bottle gourd (USVL1VR-Ls)	cmolsiB247
CmoCh15G010570	Cucumber (Gy14) v2	cgybcmoB575
CmoCh15G010570	Cucumber (Gy14) v2	cgybcmoB593
CmoCh15G010570	Melon (DHL92) v3.6.1	cmomedB274
CmoCh15G010570	Silver-seed gourd	carcmoB0691
CmoCh15G010570	Cucumber (Chinese Long) v3	cmocucB0338
CmoCh15G010570	Cucumber (Chinese Long) v3	cmocucB0355
CmoCh15G010570	Watermelon (97103) v2	cmowmbB266
CmoCh15G010570	Wax gourd	cmowgoB0371
CmoCh15G010570	Cucurbita moschata (Rifu)	cmocmoB251
CmoCh15G010570	Cucumber (Gy14) v1	cgycmoB0598
CmoCh15G010570	Cucumber (Gy14) v1	cgycmoB0600