Lsi09G009190 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G009190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	ADP-ribosylation factor-like protein 8B-A
Location	chr09 : 11360420 .. 11362752 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAGCTTTGGACAAGCGGACAGTACACGGATAGAACATTTTGGCCCTCGAGGTTTTCCTCGAAGAATGAGTTGCTCAAGTTTCTGTCTCTTCTTCTTCTCCATTACTCATCTCTTTCGTCTATGAATATTCCTTCTTTCCTAATAAACTTCCACAGTTTCCATTTCTTCAGCTCCTTTTGTTGATCAGTAATCAAGACTTCTTCACAGTTCCTTACATTTCCGGAAATGGGTTTTTTCGATTCCATCCTCAATTGGCTCAGGAGGTACGATTTGTTCTTTCCCCTAAAATTTCCTGTTCTTGAATTGTGGGATTTTATATTATTTAGTGATTCTGTTTATTTGGTGGCTGAGAAAAAATTAGGAATAATTTTACTTGGTTATTTGAGATTAATTGTTATTAGTTTGTTGAACGAAGGAATTGTCGGCTGCGTAGGGAAAGCTGCGTTTTAATTTTAAATTCGAACATGGACCTCTTGTTTAACATTAATCTATAGTGAAGGTTCATTGGAAATGCAATATTTTGTGTATTCGTTTGGTCTTCTATTGAGAATTATAATGTTCATTTGAAGTTTGAATATTCAATCCGTCGAGTTGAGTGGTGCAGCCGTTCAAGATTTATAGATTTTTTAGTTAAAATTGGCCAACTGGGTCCCTTACGAATCTTATACTTATCACTATGTTTTTGTGATGCCACTGAGATGGTTTACTCTGAAGTCCAGATTGCTTGTAGGTTTGAGTTTTTAATGTAGTTCCAGTAAGTTAGCTTTTCTTTATTATTTTTTAAGAAAATACCTCAAAAGAAAGAAGAAACTAGAATTGACAACATAGTCATTCAAAGTTTAATTTATTTTTTTTTAGAAACAACTATGTTCATTGAAAGGAAAAAAAAAAAAAAAGAAAAAGAATAGAAGGGCATACTAAAAGTCAAACCCACAAAAATTCCACTCAAGATAGGGCGTCTAACTAAGTAAAATCGTGTATATAGAGTAATTACCAAAAAGTTTTCGAAATCGAAGTCCAAAGATAAACATGAAACTTCACCAAGGACCAAACATCACTAGGGTCTCTTGACACATCTAAAAACTTTGTTATTTTTCTCTCCTCAAAGAACCCATAATAGAGCACAGATCCCAACCAACAAATGACCCATTCTCGCTAAAAGGTGGGTAGAGCAGGAACTCTCTAATCAAGTCTCTAACATCCCTTTGACGATAACCTGATGTAGTCCCTGTACATCATTATATAGGTTGACAGGCCAATGACTCACAACATAAAGAATAACTGATATTATTACTACCACGTCAGAACAAATAATGGACACTTTTAACATTTCTGTGGAGGTTGGGTAGGGTTGGATTTAGGCGCAGAAAATACTGGCTATACCTTTCTTCCTTGAGGCTGGCCATGATATTGAGAGTTTCTCTCCGTACCACTTGAAATCTTTTTTAGATACCCCCTAAAGTTATAAACTTATAATGTTGAAGACACAATCGAGTTTGTTGGTCTAGGCGGCTGTTCTCTAGCTAGGATTTATTTTGTTTGCCTTCTTGCCTTTTAGTTTTGTAATGGAATCCCAAGTTTTAGTGAAGTCATTGTGTCAATCTAGCTTCCATTACCATGGCTTTATCGTTTTATCTTCTTCGTGAAAAAACAGAAGTGTTGTCATCTCCAGTTTGATCTTTGGTTTGGTAGCTCTGTAGAATCATGAAATGCCTGTTGCTACGTTCTTGAATTAACCCTTTAGTTTATTAATAAACAAAAGTTCCAGAGAAATGGAGTAACCATCGATGCATGGTATTTCAGTTTTTTTCATATGCCTAACCTTATTAAAGATCTGAAGGAAGCTGTTTCTTGCTAGTACTTGAGATATTTTGAAGTTCTTCTTTTCAATATAACTGTCTTGTGTGCCTGTTTTTCAGCCTGTTCTTCAAACAGGAAATGGAGCTTTCACTTGTAGGCCTCCAGAATGCTGGGAAGACATCTCTTGTCAATTCTATTGCTGTAAGAAAATGCAAATTTTCACATCTGTTTCTTTGTGTATGGGAATGGCCTTCTTGTTCCCTGATGGTTTTCAAATTTTACAGACAGGGGGCTACAGTGAGGATATGATTCCAACTGTGAGTATGTTTTTCTTTCAAGTTCGCTGTTTACGCTCATGCAACTGAATGTATCTTATAATCTTCACTTCATATTCTGATAACCAGGTCGGGTTTAACATGCGGAAAGTTACCAAGGGCAATGTAACAATTAAACTTTGGGACCTTGGAGGGCAGAGGAGATTCCGTACAATGTGGGAGAGATATTGCCGTGGCGTGACTGCAATTGTGTAA

mRNA sequence

CTTCAGCTTTGGACAAGCGGACAGTACACGGATAGAACATTTTGGCCCTCGAGGTTTTCCTCGAAGAATGAGTTGCTCAAGTTTCTGTCTCTTCTTCTTCTCCATTACTCATCTCTTTCGTCTATGAATATTCCTTCTTTCCTAATAAACTTCCACAGTTTCCATTTCTTCAGCTCCTTTTGTTGATCAGTAATCAAGACTTCTTCACAGTTCCTTACATTTCCGGAAATGGGTTTTTTCGATTCCATCCTCAATTGGCTCAGGAGCCTGTTCTTCAAACAGGAAATGGAGCTTTCACTTGTAGGCCTCCAGAATGCTGGGAAGACATCTCTTGTCAATTCTATTGCTACAGGGGGCTACAGTGAGGATATGATTCCAACTGTCGGGTTTAACATGCGGAAAGTTACCAAGGGCAATGTAACAATTAAACTTTGGGACCTTGGAGGGCAGAGGAGATTCCGTACAATGTGGGAGAGATATTGCCGTGGCGTGACTGCAATTGTGTAA

Coding sequence (CDS)

ATGGGTTTTTTCGATTCCATCCTCAATTGGCTCAGGAGCCTGTTCTTCAAACAGGAAATGGAGCTTTCACTTGTAGGCCTCCAGAATGCTGGGAAGACATCTCTTGTCAATTCTATTGCTACAGGGGGCTACAGTGAGGATATGATTCCAACTGTCGGGTTTAACATGCGGAAAGTTACCAAGGGCAATGTAACAATTAAACTTTGGGACCTTGGAGGGCAGAGGAGATTCCGTACAATGTGGGAGAGATATTGCCGTGGCGTGACTGCAATTGTGTAA

Protein sequence

MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV

Homology

[Close]

BLAST of Lsi09G009190 vs. Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.8e-36
Identity = 69/92 (75.00%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          M FF+SI+N+ +SLF+KQEMEL+LVGLQ +GKT+LVN I+ GG+ ED IPT+GFNM+KVT
Sbjct: 1  MNFFESIINFFKSLFWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWD+GGQ RFR+MWERYCRGV AIV
Sbjct: 61 KGNVTIKLWDIGGQPRFRSMWERYCRGVNAIV 92

[Close]

BLAST of Lsi09G009190 vs. Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.2e-35
Identity = 66/92 (71.74%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          +  F+ +L+W R+LF+K+EMEL+LVGLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+T
Sbjct: 2  LALFNKLLDWFRALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWD+GGQ RFR+MWERYCRGV+AIV
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 93

[Close]

BLAST of Lsi09G009190 vs. Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.3e-35
Identity = 65/92 (70.65%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          +  F+ +L+W ++LF+K+EMEL+LVGLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+T
Sbjct: 2  LALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWD+GGQ RFR+MWERYCRGV+AIV
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 93

[Close]

BLAST of Lsi09G009190 vs. Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-34
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          +     +L+W RSLF+K+EMEL+LVGLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVT
Sbjct: 2  LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT 61

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIK+WD+GGQ RFR+MWERYCRGV AIV
Sbjct: 62 KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIV 93

[Close]

BLAST of Lsi09G009190 vs. Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-34
Identity = 65/92 (70.65%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          +  F+ +L+W ++LF+K+EMEL+LVGLQ +GKT+ VN IA+G ++EDMIPTVGFNMRK+T
Sbjct: 2  IALFNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT 61

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWD+GGQ RFR+MWERYCRGV+AIV
Sbjct: 62 KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 93

[Close]

BLAST of Lsi09G009190 vs. TrEMBL
Match: A0A0A0KN64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G424890 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.1e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 92

[Close]

BLAST of Lsi09G009190 vs. TrEMBL
Match: U5FJC2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02830g PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-44
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG FDS+LNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLFDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGV+AI+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92

[Close]

BLAST of Lsi09G009190 vs. TrEMBL
Match: F2E4A7_HORVD (Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.8e-44
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG +DS+LNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGVTAI+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIL 92

[Close]

BLAST of Lsi09G009190 vs. TrEMBL
Match: A0A067EHX3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030000mg PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.6e-44
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MGF DSILNWLRSLFFKQEMELSL+GLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGV+AI+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92

[Close]

BLAST of Lsi09G009190 vs. TrEMBL
Match: G7K1N4_MEDTR (ADP-ribosylation factor-like protein A1D OS=Medicago truncatula GN=MTR_5g078090 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.6e-44
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG +DS+LNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGV+AIV
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIV 92

[Close]

BLAST of Lsi09G009190 vs. TAIR10
Match: AT5G37680.1 (AT5G37680.1 ADP-ribosylation factor-like A1A)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-46
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG +DS+LNWLRSLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIK+WDLGGQRRFRTMWERYCRGV+AIV
Sbjct: 61 KGNVTIKIWDLGGQRRFRTMWERYCRGVSAIV 92

[Close]

BLAST of Lsi09G009190 vs. TAIR10
Match: AT5G67560.1 (AT5G67560.1 ADP-ribosylation factor-like A1D)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-43
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG +D++LNWLRSLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KG+VTIKLWDLGGQ RFR+MWERYCR V+AIV
Sbjct: 61 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIV 92

[Close]

BLAST of Lsi09G009190 vs. TAIR10
Match: AT3G49870.1 (AT3G49870.1 ADP-ribosylation factor-like A1C)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-43
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG  ++ LNWLRSLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLLEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQ RFR+MWERYCR V+AIV
Sbjct: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92

[Close]

BLAST of Lsi09G009190 vs. TAIR10
Match: AT3G49860.1 (AT3G49860.1 ADP-ribosylation factor-like A1B)

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-31
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 1


Query: 18 QEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77
          +EMELSLVGLQN+GKTSLVN +ATG YSEDMIPTVGFNMRKVTK NV I+LWDLGGQ RF
Sbjct: 10 KEMELSLVGLQNSGKTSLVNVVATGEYSEDMIPTVGFNMRKVTKENVAIRLWDLGGQPRF 69

Query: 78 RTMWERYCRGVTAIV 93
          R MWERYCR V+ IV
Sbjct: 70 RCMWERYCRAVSMIV 84

[Close]

BLAST of Lsi09G009190 vs. TAIR10
Match: AT5G14670.1 (AT5G14670.1 ADP-ribosylation factor A1B)

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-11
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 14 LFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
          LF K+EM + +VGL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GG
Sbjct: 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGG 71

Query: 74 QRRFRTMWERYCRGVTAIV 93
          Q + R +W  Y +    ++
Sbjct: 72 QDKIRPLWRHYFQNTQGLI 89

[Close]

BLAST of Lsi09G009190 vs. NCBI nr
Match: gi|449445077|ref|XP_004140300.1| (PREDICTED: ADP-ribosylation factor-like protein 8A [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 92

[Close]

BLAST of Lsi09G009190 vs. NCBI nr
Match: gi|659121177|ref|XP_008460532.1| (PREDICTED: ADP-ribosylation factor-like protein 8A isoform X1 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 92

[Close]

BLAST of Lsi09G009190 vs. NCBI nr
Match: gi|659121179|ref|XP_008460533.1| (PREDICTED: ADP-ribosylation factor-like protein 8 isoform X2 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 92

[Close]

BLAST of Lsi09G009190 vs. NCBI nr
Match: gi|566210977|ref|XP_006372562.1| (hypothetical protein POPTR_0017s02830g [Populus trichocarpa])

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-44
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG FDS+LNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLFDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGV+AI+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92

[Close]

BLAST of Lsi09G009190 vs. NCBI nr
Match: gi|326497189|dbj|BAK02179.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-44
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MGFFDSILNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60
          MG +DS+LNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT
Sbjct: 1  MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVT 60

Query: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIV 93
          KGNVTIKLWDLGGQRRFRTMWERYCRGVTAI+
Sbjct: 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVTAIL 92

The following BLAST results are available for this feature:

BLAST of Lsi09G009190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARL8_DICDI	3.8e-36	75.00	ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 ...	[more]
ARL8A_CHICK	4.2e-35	71.74	ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1	[more]
ARL8A_XENTR	9.3e-35	70.65	ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1	[more]
ARL8B_PONAB	1.2e-34	72.83	ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1	[more]
ARL8A_HUMAN	1.2e-34	70.65	ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1	[more]

BLAST of Lsi09G009190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN64_CUCSA	8.1e-46	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G424890 PE=3 SV=1	[more]
U5FJC2_POPTR	4.5e-44	95.65	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02830g PE=3 SV=1	[more]
F2E4A7_HORVD	5.8e-44	95.65	Predicted protein OS=Hordeum vulgare var. distichum PE=2 SV=1	[more]
A0A067EHX3_CITSI	7.6e-44	94.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030000mg PE=3 SV=1	[more]
G7K1N4_MEDTR	7.6e-44	95.65	ADP-ribosylation factor-like protein A1D OS=Medicago truncatula GN=MTR_5g078090 ...	[more]

BLAST of Lsi09G009190 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37680.1	1.5e-46	93.48	ADP-ribosylation factor-like A1A	[more]
AT5G67560.1	2.6e-43	86.96	ADP-ribosylation factor-like A1D	[more]
AT3G49870.1	4.4e-43	86.96	ADP-ribosylation factor-like A1C	[more]
AT3G49860.1	5.1e-31	82.67	ADP-ribosylation factor-like A1B	[more]
AT5G14670.1	2.6e-11	36.71	ADP-ribosylation factor A1B	[more]

BLAST of Lsi09G009190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445077\|ref\|XP_004140300.1\|	1.2e-45	100.00	PREDICTED: ADP-ribosylation factor-like protein 8A [Cucumis sativus]	[more]
gi\|659121177\|ref\|XP_008460532.1\|	1.2e-45	100.00	PREDICTED: ADP-ribosylation factor-like protein 8A isoform X1 [Cucumis melo]	[more]
gi\|659121179\|ref\|XP_008460533.1\|	1.2e-45	100.00	PREDICTED: ADP-ribosylation factor-like protein 8 isoform X2 [Cucumis melo]	[more]
gi\|566210977\|ref\|XP_006372562.1\|	6.4e-44	95.65	hypothetical protein POPTR_0017s02830g [Populus trichocarpa]	[more]
gi\|326497189\|dbj\|BAK02179.1\|	8.4e-44	95.65	predicted protein [Hordeum vulgare subsp. vulgare]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR024156	Small_GTPase_ARF
IPR006689	Small_GTPase_ARF/SAR
IPR005225	Small_GTP-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051607	defense response to virus
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0009691	cytokinin biosynthetic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G009190.1	Lsi09G009190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 18..91 score: 1.3
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 9..92 score: 4.5
IPR024156	Small GTPase superfamily, ARF type	PROFILE	PS51417	ARF	coord: 13..92 score: 8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 11..92 score: 6.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 18..92 score: 6.9
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 1..92 score: 4.8
None	No IPR available	PANTHER	PTHR11711:SF152	ADP-RIBOSYLATION FACTOR-LIKE A1A	coord: 1..92 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G009190	Csa5G424890	Cucumber (Chinese Long) v2	culsiB330
Lsi09G009190	CmaCh04G022890	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G009190	CmoCh04G023930	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G009190	Cla009157	Watermelon (97103) v1	lsiwmB029
Lsi09G009190	ClCG01G008790	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G009190	MELO3C022865.2	Melon (DHL92) v3.6.1	lsimedB015
Lsi09G009190	Cla97C01G009020	Watermelon (97103) v2	lsiwmbB007
Lsi09G009190	Bhi12G001059	Wax gourd	lsiwgoB009
Lsi09G009190	Cp4.1LG01g19770	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G009190	CsGy5G014990	Cucumber (Gy14) v2	cgyblsiB302
Lsi09G009190	Carg18274	Silver-seed gourd	carlsiB480
Lsi09G009190	CsaV3_5G024180	Cucumber (Chinese Long) v3	cuclsiB353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G009190	Wild cucumber (PI 183967)	cpilsiB330
Lsi09G009190	Melon (DHL92) v3.5.1	lsimeB014
Lsi09G009190	Silver-seed gourd	carlsiB754
Lsi09G009190	Cucumber (Gy14) v1	cgylsiB073
Lsi09G009190	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G009190	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G009190	Cucurbita pepo (Zucchini)	cpelsiB130