Lsi09G009030 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G009030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Glutamate decarboxylase
Location	chr09 : 10920892 .. 10921650 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCAGCCTTCCAAAGCTGACCAAAAATCACTCTATTTAAGCCCCCCTTCTTCTTCATTAACCTCCATTGATCATCTTCTCATTCTTCTCTCTGCAACTAATTTCTTCCTCTCTTGCTTCCATCTCCATCCGCCATGGTTCTCTCCAAGACTGCTTCTCAGACAGATGTTTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGGTAATTTCATTTCATTAATCGCGGATCAGATCGGTTCATTGTTTTCGTTTCTCTGTTTGATTTTAGATCTCGAAATTAATTTCTCCAATTCCTATCTCTGATTTGTGTTTTTCCGTGTGATTCTGTTTCTCGATCCATTTCATTTTCAATAATGTCCTGTAATTTGTTGTAGATTCAAAATGCCGGAAAATTCGATCCCGAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTAGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGGTACGTTTCTCCATGTCTCTGTTAGCTTTAATCGAAAGATTAGATCGATTTTTCGTTCTATCGTTTCTCTCCATCAACGGTTACTTTCCTCTGGAAATTCTCCTGAACTGCGAATTGCAGCGTTCGGTCGTGGCGAAATTTCTACGACCGAGATTAAAAAAT

mRNA sequence

CATCAGCCTTCCAAAGCTGACCAAAAATCACTCTATTTAAGCCCCCCTTCTTCTTCATTAACCTCCATTGATCATCTTCTCATTCTTCTCTCTGCAACTAATTTCTTCCTCTCTTGCTTCCATCTCCATCCGCCATGGTTCTCTCCAAGACTGCTTCTCAGACAGATGTTTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGGTAATTTCATTTCATTAATCGCGGATCAGATCGGTTCATTATTCAAAATGCCGGAAAATTCGATCCCGAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTAGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGGTACGTTTCTCCATGTCTCTGTTAGCTTTAATCGAAAGATTAGATCGATTTTTCGTTCTATCGTTTCTCTCCATCAACGGTTACTTTCCTCTGGAAATTCTCCTGAACTGCGAATTGCAGCGTTCGGTCGTGGCGAAATTTCTACGACCGAGATTAAAAAAT

Coding sequence (CDS)

CATCAGCCTTCCAAAGCTGACCAAAAATCACTCTATTTAAGCCCCCCTTCTTCTTCATTAACCTCCATTGATCATCTTCTCATTCTTCTCTCTGCAACTAATTTCTTCCTCTCTTGCTTCCATCTCCATCCGCCATGGTTCTCTCCAAGACTGCTTCTCAGACAGATGTTTCCGTCCACTCCACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGGTAATTTCATTTCATTAATCGCGGATCAGATCGGTTCATTATTCAAAATGCCGGAAAATTCGATCCCGAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTAGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGGTACGTTTCTCCATGTCTCTGTTAGCTTTAATCGAAAGATTAGATCGATTTTTCGTTCTATCGTTTCTCTCCATCAACGGTTACTTTCCTCTGGAAATTCTCCTGAACTGCGAATTGCAGCGTTCGGTCGTGGCGAAATTTCTACGACCGAGATTAAAAAAT

Protein sequence

HQPSKADQKSLYLSPPSSSLTSIDHLLILLSATNFFLSCFHLHPPWFSPRLLLRQMFPSTPPSLLDMCEPLSRGNFISLIADQIGSLFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQVRFSMSLLALIERLDRFFVLSFLSINGYFPLEILLNCELQRSVVAKFLRPRLKN

Homology

[Close]

BLAST of Lsi09G009030 vs. Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKLIM++INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. Swiss-Prot
Match: DCE4_ARATH (Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           F+MPENSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKL+M +INKNYVDMDE
Sbjct: 30  FEMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMESINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMP+NSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKL+M +INKNYVDMDE
Sbjct: 30  FKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMP+ S+PKEAA+QI+NDELMLDGNPRLNLASFV+TWMEPECDKLIM++INKNYVDMDE
Sbjct: 31  FKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDE 90

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 91  YPVTTELQNR 100

[Close]

BLAST of Lsi09G009030 vs. Swiss-Prot
Match: DCE5_ARATH (Glutamate decarboxylase 5 OS=Arabidopsis thaliana GN=GAD5 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.0e-30
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMP++ +PK+AA+Q+INDELMLDGNPRLNLASFVTTWMEPECDKLIM ++NKNYVDMDE
Sbjct: 29  FKMPDHCMPKDAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDE 88

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 89  YPVTTELQNR 98

[Close]

BLAST of Lsi09G009030 vs. TrEMBL
Match: A0A068U0N0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036817001 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-31
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 89

Query: 148 YPVTTELQVRFSMSLL 164
           YPVTTELQ    + LL
Sbjct: 90  YPVTTELQASLLLLLL 105

[Close]

BLAST of Lsi09G009030 vs. TrEMBL
Match: A0A0A0KPY1_CUCSA (Glutamate decarboxylase OS=Cucumis sativus GN=Csa_5G348050 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. TrEMBL
Match: B9MX23_POPTR (Glutamate decarboxylase OS=Populus trichocarpa GN=POPTR_0017s01430g PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. TrEMBL
Match: W9RQ01_9ROSA (Glutamate decarboxylase 1 OS=Morus notabilis GN=L484_007797 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. TrEMBL
Match: B9H3K1_POPTR (Glutamate decarboxylase OS=Populus trichocarpa GN=POPTR_0004s07350g PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. TAIR10
Match: AT5G17330.1 (AT5G17330.1 glutamate decarboxylase)

HSP 1 Score: 141.4 bits (355), Expect = 6.5e-34
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKLIM++INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. TAIR10
Match: AT2G02010.1 (AT2G02010.1 glutamate decarboxylase 4)

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-33
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           F+MPENSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKL+M +INKNYVDMDE
Sbjct: 30  FEMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMESINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. TAIR10
Match: AT3G17760.1 (AT3G17760.1 glutamate decarboxylase 5)

HSP 1 Score: 132.1 bits (331), Expect = 4.0e-31
Identity = 59/70 (84.29%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMP++ +PK+AA+Q+INDELMLDGNPRLNLASFVTTWMEPECDKLIM ++NKNYVDMDE
Sbjct: 29  FKMPDHCMPKDAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDE 88

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 89  YPVTTELQNR 98

[Close]

BLAST of Lsi09G009030 vs. TAIR10
Match: AT1G65960.2 (AT1G65960.2 glutamate decarboxylase 2)

HSP 1 Score: 129.0 bits (323), Expect = 3.3e-30
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           +++ ENSIPK+AA+QII DELMLDGNPRLNLASFVTTWMEPECDKLIM +INKNYVDMDE
Sbjct: 29  YEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDE 88

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 89  YPVTTELQNR 98

[Close]

BLAST of Lsi09G009030 vs. TAIR10
Match: AT2G02000.1 (AT2G02000.1 glutamate decarboxylase 3)

HSP 1 Score: 124.4 bits (311), Expect = 8.2e-29
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 86  SLFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDM 145
           S F++P+NSIPKEAA+QIINDEL  DGNPRLNLASFVTTWMEPECDKL+M +INKN V+M
Sbjct: 28  SRFEIPKNSIPKEAAYQIINDELKFDGNPRLNLASFVTTWMEPECDKLMMESINKNNVEM 87

Query: 146 DEYPVTTELQVR 158
           D+YPVTT+LQ R
Sbjct: 88  DQYPVTTDLQNR 99

[Close]

BLAST of Lsi09G009030 vs. NCBI nr
Match: gi|661894685|emb|CDP01684.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAA+QIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 89

Query: 148 YPVTTELQVRFSMSLL 164
           YPVTTELQ    + LL
Sbjct: 90  YPVTTELQASLLLLLL 105

[Close]

BLAST of Lsi09G009030 vs. NCBI nr
Match: gi|703116132|ref|XP_010101062.1| (Glutamate decarboxylase 1 [Morus notabilis])

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. NCBI nr
Match: gi|566210674|ref|XP_006372416.1| (glutamate decarboxylase 1 family protein [Populus trichocarpa])

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. NCBI nr
Match: gi|743888307|ref|XP_011038410.1| (PREDICTED: glutamate decarboxylase 1-like [Populus euphratica])

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

[Close]

BLAST of Lsi09G009030 vs. NCBI nr
Match: gi|778702173|ref|XP_011655149.1| (PREDICTED: glutamate decarboxylase 1 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 88  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDE 147
           FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMA+INKNYVDMDE
Sbjct: 30  FKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDE 89

Query: 148 YPVTTELQVR 158
           YPVTTELQ R
Sbjct: 90  YPVTTELQNR 99

The following BLAST results are available for this feature:

BLAST of Lsi09G009030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCE1_ARATH	1.2e-32	94.29	Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2	[more]
DCE4_ARATH	1.3e-31	91.43	Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=1 SV=1	[more]
DCE_PETHY	1.3e-31	91.43	Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1	[more]
DCE_SOLLC	1.4e-30	87.14	Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1	[more]
DCE5_ARATH	7.0e-30	84.29	Glutamate decarboxylase 5 OS=Arabidopsis thaliana GN=GAD5 PE=2 SV=1	[more]

BLAST of Lsi09G009030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A068U0N0_COFCA	1.5e-31	90.79	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036817001 PE=4 SV=1	[more]
A0A0A0KPY1_CUCSA	2.6e-31	97.14	Glutamate decarboxylase OS=Cucumis sativus GN=Csa_5G348050 PE=3 SV=1	[more]
B9MX23_POPTR	2.6e-31	97.14	Glutamate decarboxylase OS=Populus trichocarpa GN=POPTR_0017s01430g PE=3 SV=1	[more]
W9RQ01_9ROSA	2.6e-31	97.14	Glutamate decarboxylase 1 OS=Morus notabilis GN=L484_007797 PE=3 SV=1	[more]
B9H3K1_POPTR	2.6e-31	97.14	Glutamate decarboxylase OS=Populus trichocarpa GN=POPTR_0004s07350g PE=3 SV=1	[more]

BLAST of Lsi09G009030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17330.1	6.5e-34	94.29	glutamate decarboxylase	[more]
AT2G02010.1	7.2e-33	91.43	glutamate decarboxylase 4	[more]
AT3G17760.1	4.0e-31	84.29	glutamate decarboxylase 5	[more]
AT1G65960.2	3.3e-30	85.71	glutamate decarboxylase 2	[more]
AT2G02000.1	8.2e-29	79.17	glutamate decarboxylase 3	[more]

BLAST of Lsi09G009030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661894685\|emb\|CDP01684.1\|	2.2e-31	90.79	unnamed protein product [Coffea canephora]	[more]
gi\|703116132\|ref\|XP_010101062.1\|	3.7e-31	97.14	Glutamate decarboxylase 1 [Morus notabilis]	[more]
gi\|566210674\|ref\|XP_006372416.1\|	3.7e-31	97.14	glutamate decarboxylase 1 family protein [Populus trichocarpa]	[more]
gi\|743888307\|ref\|XP_011038410.1\|	3.7e-31	97.14	PREDICTED: glutamate decarboxylase 1-like [Populus euphratica]	[more]
gi\|778702173\|ref\|XP_011655149.1\|	3.7e-31	97.14	PREDICTED: glutamate decarboxylase 1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0030170	pyridoxal phosphate binding
GO:0016831	carboxy-lyase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0019752	carboxylic acid metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR015424	PyrdxlP-dep_Trfase
IPR002129	PyrdxlP-dep_de-COase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0019530	taurine metabolic process
biological_process	GO:0019752	carboxylic acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004351	glutamate decarboxylase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0016831	carboxy-lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G009030.1	Lsi09G009030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002129	Pyridoxal phosphate-dependent decarboxylase	PFAM	PF00282	Pyridoxal_deC	coord: 91..162 score: 2.7
IPR015424	Pyridoxal phosphate-dependent transferase	unknown	SSF53383	PLP-dependent transferases	coord: 82..157 score: 9.02
None	No IPR available	PANTHER	PTHR11999	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	coord: 90..157 score: 2.3
None	No IPR available	PANTHER	PTHR11999:SF92	SUBFAMILY NOT NAMED	coord: 90..157 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G009030	Csa5G348050	Cucumber (Chinese Long) v2	culsiB325
Lsi09G009030	CSPI05G13710	Wild cucumber (PI 183967)	cpilsiB326
Lsi09G009030	CmaCh04G022750	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G009030	CmaCh15G007620	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G009030	CmoCh15G007900	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G009030	CmoCh04G023800	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G009030	Cla009137	Watermelon (97103) v1	lsiwmB029
Lsi09G009030	MELO3C025078	Melon (DHL92) v3.5.1	lsimeB013
Lsi09G009030	ClCG01G008630	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G009030	MELO3C025078.2	Melon (DHL92) v3.6.1	lsimedB014
Lsi09G009030	Bhi12G001042	Wax gourd	lsiwgoB009
Lsi09G009030	Cp4.1LG01g19660	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G009030	Cp4.1LG13g05410	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G009030	CsGy5G013610	Cucumber (Gy14) v2	cgyblsiB297
Lsi09G009030	Carg18287	Silver-seed gourd	carlsiB480
Lsi09G009030	Carg01443	Silver-seed gourd	carlsiB754
Lsi09G009030	CsaV3_5G020650	Cucumber (Chinese Long) v3	cuclsiB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G009030	Cucumber (Gy14) v1	cgylsiB435
Lsi09G009030	Melon (DHL92) v3.5.1	lsimeB009
Lsi09G009030	Melon (DHL92) v3.6.1	lsimedB009
Lsi09G009030	Watermelon (97103) v2	lsiwmbB007