Lsi09G008460 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G008460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionHigh mobility group B protein 7
Locationchr09 : 9743698 .. 9746048 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGGAACGTCGATACGAAACGGTATAAAATCAACGGCAATAGATCGAGCCAAGTCAGCGATCCTTGTGAAACGAAAAGAAAACGCGGGGATTAAGGGCGCCAAAATTTAGAAAAAAAAACTTTCCCTCTTTCTTAGTTGGTTTGCTTTAATAACAATGACCGCTTCATTTTTCTCCACCGAAAAATTTCCCTTTCGGTTGAATTCTTCAGCATTTTCAAAGTCACAGACTCAGCGGCGGAGAGGAAGAAATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCTGACGTCGCCGTCACTGGCCCTTCGCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGGTGCGTTCTTTGTTTTTCCCCCATATTCTTTATGCATGTTCTTGTTGATTTACATTGACTGGCTTAGCGTTGGCGAGGATGTAGTCGTATTGCCGAATTTCTGTAACTTTGTGTTTTCTTTCTGCTTTCATTTTTACGTTTGTTTCATCGATTGATTTGTGTTATACTCTCGTAACACTCCATGTTAGTGGTTTCTAGAGTTTATTTTTTTGTTTTTGTTTTTGGCATTGATAATTTCTGGTTTGCAGTCCGCCTTCTAGTCCGATTTTGTTTTAGAGTTGAATGCAATGTTCGTTTTCTTTATGAATGTTCTTGTTGAGTTACATTTACTGGATTGGGGCTAAGATGATATGGAATTATTGATGAATCTCTATAATACTGCGTGTTTATATCAGTTTCATTTCTCTGTTAGGTTTATTTGTGTGTTCGTCTTGTAGTTTCCTAATACTCCATTTCTTCGGTCATTTTCTAATAAATAAATTGTGGTTTCTTGAGTTTATGTTGTTTATGCATTGATAATATCTGGCTATCAGTTTGCCTTTTGGTCGGAGTTAGTTTTGGAGTTGAATGAACTGTAACCAGAGGAATTGTAGACGCAGCAATTTTGAGTTTCTTGACTACGGTAGAAATTGATTTCTCTTATTTGAATGGTCAATTTTCGGCTTACAGCGATGAGTGCGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGCAGCCTCGACGCCAAAATTAGAATGAATTTAGGTATATTTTTCGTGTGGCTTCGTTATTACCTTTTTTTGTTGGCATTATTTTCTGATTTGTAACTCTTACCTTTCTGTTTTCCTGTAGAGTCTCAGACTGTTGAAAAGCAAGCACAAGCCAAACAGCCAGCTGAAAGGTATCTTGCTCATTTTCCCTTGTTCTTATCTGGTTAAGGTGATGCTTTGAGTTGTATTAACTTGATTGTTTCGTGGTACAGGAAAAGATCAGCACCATCCGAACCAAAGGCTAAGAAATCCAGAACGGAGAAGAGAGGGAAGAAAGACAAAGATCCAAATGCCCCCAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGTACGCAAATTCCACTAGTGTTTATCAGATTACTACATGGGTAGTCTCTATTTACTCAACTCTTCACTGAATTTGCTTGTTGTGATACTTCAGGGATGACTTCAGAAAATCATATAAAGAAGCAAATCCTGATTCCAAAGGCGTTAAGGAGGTTAGCACAGATCCAAATACAATTCCCAAGTTCCCAATGAAAAATAATATCGATATCCCAAATTATTGTATGCTGTCTTCTGATTGAGTATTTCAATCATTATAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCAATGACCGATGAAGTGAGTTGCATTCCCTGCCGTTTGAAAACATGTTTACATTTTGTGAATTGAGTCATCTAAACCTTTAAATGATGAACAGGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCTAAATGCTGAAAATGAAGATGTAAGATTTAAGCTCTAAAATGTTATCTTTCAGTTCAATTTTGCAAATGCTTATGTGGGGCTTTTCTTCAGGATGAAAAAGAGACAGAAGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGACGAAGAGTAAGACATTCCATGGTAGGCTTTTTGTAATAGCAAATAGCTAGAAAAAAGCTTCTTCTTCACTGCCTGGTTACTGTTGTAAATTCAGAATCTAATTTAGTCAAACTGCTTTTGGATTCTATGGTTGCGTTTGAAGCAATATAGTACAAATGCTTGATTTTTCTGTTCTTTTATTGATCTCAAATTTAAATTCGAACCCATCTAGTCTTAACCTAGCTATGTAGTTTGGCTCTTGAATTCATTATTTATGTTTTCATTGTCACATAGCAAATCAATGATGGTATTATTATTATTTTC

mRNA sequence

ATGAATTTGGAACGTCGATACGAAACGCATTTTCAAAGTCACAGACTCAGCGGCGGAGAGGAAGAAATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCTGACGTCGCCGTCACTGGCCCTTCGCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGCGATGAGTGCGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGCAGCCTCGACGCCAAAATTAGAATGAATTTAGAGTCTCAGACTGTTGAAAAGCAAGCACAAGCCAAACAGCCAGCTGAAAGGAAAAGATCAGCACCATCCGAACCAAAGGCTAAGAAATCCAGAACGGAGAAGAGAGGGAAGAAAGACAAAGATCCAAATGCCCCCAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGGATGACTTCAGAAAATCATATAAAGAAGCAAATCCTGATTCCAAAGGCGTTAAGGAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCAATGACCGATGAAGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCTAAATGCTGAAAATGAAGATGATGAAAAAGAGACAGAAGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGACGAAGAGTAAGACATTCCATGGTAGGCTTTTTGTAATAGCAAATAGCTAGAAAAAAGCTTCTTCTTCACTGCCTGGTTACTGTTGTAAATTCAGAATCTAATTTAGTCAAACTGCTTTTGGATTCTATGGTTGCGTTTGAAGCAATATAGTACAAATGCTTGATTTTTCTGTTCTTTTATTGATCTCAAATTTAAATTCGAACCCATCTAGTCTTAACCTAGCTATGTAGTTTGGCTCTTGAATTCATTATTTATGTTTTCATTGTCACATAGCAAATCAATGATGGTATTATTATTATTTTC

Coding sequence (CDS)

ATGAATTTGGAACGTCGATACGAAACGCATTTTCAAAGTCACAGACTCAGCGGCGGAGAGGAAGAAATGGCCGGCGGAGGATCGTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCTGACGTCGCCGTCACTGGCCCTTCGCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGCGATGAGTGCGGCAAAAGTGTTCCGGTAGCCCTAATCAGCATGCACAGTTGCAGCCTCGACGCCAAAATTAGAATGAATTTAGAGTCTCAGACTGTTGAAAAGCAAGCACAAGCCAAACAGCCAGCTGAAAGGAAAAGATCAGCACCATCCGAACCAAAGGCTAAGAAATCCAGAACGGAGAAGAGAGGGAAGAAAGACAAAGATCCAAATGCCCCCAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGGATGACTTCAGAAAATCATATAAAGAAGCAAATCCTGATTCCAAAGGCGTTAAGGAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCAATGACCGATGAAGAGAAGAAGCCTTACCAAGATAAAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCTAAATGCTGAAAATGAAGATGATGAAAAAGAGACAGAAGAGGTTGCAGAGAAGGAGGTGGAAGAAATAACAGACGAAGAGTAA

Protein sequence

MNLERRYETHFQSHRLSGGEEEMAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITDEE
Homology
[Close]
BLAST of Lsi09G008460 vs. Swiss-Prot
Match: HMGB7_ARATH (High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-41
Identity = 113/202 (55.94%), Postives = 147/202 (72.77%), Query Frame = 1 

Query: 30  KSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLE 89
           K RKRVEA  +  + T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NLE
Sbjct: 12  KQRKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLE 71

Query: 90  SQTVEKQAQA-KQPAERKRSAPSEPKAKK-SRTEKRGKKDKDPNAPKRPPTAFFVFMDDF 149
           +Q VE QA+A K+PAE+K++    PK K+  +T    K     N PKRP TAFF+FM DF
Sbjct: 72  AQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDF 131

Query: 150 RKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNA--EN 209
           RK++K  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LES +A  E 
Sbjct: 132 RKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEE 191

Query: 210 EDDEKETEEVAEKEVEEITDEE 228
           ED+EK++++V + E +++ D++
Sbjct: 192 EDEEKQSDDVDDAEEKQVDDDD 210

[Close]
BLAST of Lsi09G008460 vs. Swiss-Prot
Match: HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1 

Query: 106 KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 165
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 166 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 225
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 226 EE 228
           E+
Sbjct: 147 ED 143

[Close]
BLAST of Lsi09G008460 vs. Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.7e-16
Identity = 60/139 (43.17%), Postives = 90/139 (64.75%), Query Frame = 1 

Query: 89  ESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFR 148
           +S+   K+A+ K    +K +A +    K  +   +GK+ KDPN PKRPP+AFFVFM DFR
Sbjct: 5   KSKGESKKAETKLAVNKKGAAAT----KGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 64

Query: 149 KSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDD 208
           + YK+ +P++K V  V K  GE+WKS+++EEK PY D+A + K EYE  L++ N + E  
Sbjct: 65  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEG- 124

Query: 209 EKETEEVAEKEVEEITDEE 228
            K+ EE ++K   E+ DE+
Sbjct: 125 -KDDEEGSDKSKSEVNDED 137

[Close]
BLAST of Lsi09G008460 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.2e-16
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1 

Query: 114 KAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWK 173
           K + + T+K  K  KDPN PKRPP+AFFVFM+DFRK+YKE +P++K V  V K GG+KWK
Sbjct: 17  KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWK 76

Query: 174 SMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITDEE 228
            +T  EK P+  KA + K EYEK L++ N +      E EE ++K   E+ D++
Sbjct: 77  QLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEE-SDKSRSEVNDDD 129

[Close]
BLAST of Lsi09G008460 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.2e-16
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 1 

Query: 99  AKQPAERKRSAPSEPKAKKSRTEKRGKKD--KDPNAPKRPPTAFFVFMDDFRKSYKEANP 158
           AK  AE + +     K   ++   +G K   KDPN PKRP +AFFVFM+DFR +YKE +P
Sbjct: 4   AKSKAETRST-----KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 63

Query: 159 DSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVA 218
            +K V  V K GGEKWKS++D EK PY  KA + K EYEK +++ N + E+  KE EE +
Sbjct: 64  KNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-S 123

Query: 219 EKEVEEITDEE 228
           +K V E+ DE+
Sbjct: 124 DKSVSEVNDED 128

[Close]
BLAST of Lsi09G008460 vs. TrEMBL
Match: A0A059AAF1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00336 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.4e-59
Identity = 143/214 (66.82%), Postives = 167/214 (78.04%), Query Frame = 1 

Query: 23  MAGGGSSKS-----RKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHS 82
           MAGGGSSKS     RKRVE   A  A    SLVR KDGSAFARC+EC K VPVALISMHS
Sbjct: 1   MAGGGSSKSNAPKARKRVEVDAAAAAAASSSLVRGKDGSAFARCEECNKDVPVALISMHS 60

Query: 83  CSLDAKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPP 142
           C LDAKI+MNLE+Q +E+ A+AK+     R   SEPKAKK++TEK+ KK KD NAPKRP 
Sbjct: 61  CGLDAKIKMNLEAQVMERPAEAKKKPAVDRKRSSEPKAKKAKTEKKSKKGKDANAPKRPA 120

Query: 143 TAFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKA 202
           TAFFVFMDDFRK+YKEANPDSKGVKEVAK+GGEKWKSM+DEEKKPY DKA+ELKAE+ KA
Sbjct: 121 TAFFVFMDDFRKAYKEANPDSKGVKEVAKQGGEKWKSMSDEEKKPYLDKASELKAEFNKA 180

Query: 203 LESLNAENEDDEK--ETEEVAEKEV--EEITDEE 228
           +E+ NA + ++E+  + EE A++E   EE   EE
Sbjct: 181 MEAHNAGDGENEEGSDKEEAADEEAANEETAGEE 214

[Close]
BLAST of Lsi09G008460 vs. TrEMBL
Match: W9RX30_9ROSA (High mobility group B protein 7 OS=Morus notabilis GN=L484_023080 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.9e-58
Identity = 139/213 (65.26%), Postives = 168/213 (78.87%), Query Frame = 1 

Query: 23  MAGGG----SSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSC 82
           MAGG      +K+RKRVEA+    A    SLVR KDGSAFARC+EC K VPVALIS HSC
Sbjct: 1   MAGGAVKSNPTKTRKRVEASQESTAA---SLVRGKDGSAFARCEECSKDVPVALISFHSC 60

Query: 83  SLDAKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPT 142
           SLDAKI+MNLE+Q VEK ++  +P E+K+S+ +EPK KKS+ EK+GKK KDPN PKRPPT
Sbjct: 61  SLDAKIKMNLEAQVVEKPSETNKP-EKKKSSSTEPKLKKSKVEKKGKKGKDPNKPKRPPT 120

Query: 143 AFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL 202
           AFF+FMDDFRK +KEANPDSK VK+VAKEGGEKW S++DEEKK YQDKAAELK EY+KAL
Sbjct: 121 AFFLFMDDFRKEFKEANPDSKDVKKVAKEGGEKWNSLSDEEKKVYQDKAAELKVEYQKAL 180

Query: 203 ESLNAENEDD----EKETEEVAEKEVEEITDEE 228
           E+ +AE+ ++    EKE  E   +EVEE++D E
Sbjct: 181 EADSAEDAEEEAGSEKEAPEKEVQEVEEVSDGE 209

[Close]
BLAST of Lsi09G008460 vs. TrEMBL
Match: A0A061E3U5_THECC (High-mobility group box 6 OS=Theobroma cacao GN=TCM_007659 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.0e-57
Identity = 146/214 (68.22%), Postives = 166/214 (77.57%), Query Frame = 1 

Query: 23  MAGGGSS---KSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCS 82
           MAGG  S   K RKRV+A  A  A    SLVRAKDGSAFA+C+EC K+VPVALISMHSCS
Sbjct: 1   MAGGSKSNPPKPRKRVDA--ASTAAPASSLVRAKDGSAFAKCEECNKTVPVALISMHSCS 60

Query: 83  LDAKIRMNLESQTVEKQAQAKQ-PAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPT 142
           LDAKI+MNLE+Q +EK A+ K+ PAERK+ A +E   KK    K+ KK KDPNAPKRPPT
Sbjct: 61  LDAKIKMNLEAQVIEKPAEVKKKPAERKKPASTESNPKKP---KKLKKGKDPNAPKRPPT 120

Query: 143 AFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKAL 202
           AFF+FMDDFRKSYKEANPD+KGV  VAKEGGEKWKSM++EEKKPY DKAAELKAEYEKAL
Sbjct: 121 AFFLFMDDFRKSYKEANPDAKGVTGVAKEGGEKWKSMSEEEKKPYVDKAAELKAEYEKAL 180

Query: 203 ESLN---AENEDDEKETEE---VAEKEVEEITDE 227
           E +N    ENED E   E+    AEKE EE+ D+
Sbjct: 181 EEVNDADNENEDGEGGPEKDTAAAEKEAEEVLDD 209

[Close]
BLAST of Lsi09G008460 vs. TrEMBL
Match: A9PB77_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.1e-57
Identity = 139/202 (68.81%), Postives = 162/202 (80.20%), Query Frame = 1 

Query: 31  SRKRVEATPADVAV---TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMN 90
           +RKRVEA   D +V   T  SLVRAKDGSAF +C+EC K VPVALIS HSCSLDAKI+MN
Sbjct: 2   ARKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMN 61

Query: 91  LESQTVEKQAQAKQ-PAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDD 150
           LE+Q VEK  +AKQ PAERK+ + +EPK KK++ EK+G   +DPNAPKRPPTAFF+FMDD
Sbjct: 62  LEAQVVEKPTEAKQKPAERKKGSSTEPKLKKAKKEKKG---RDPNAPKRPPTAFFLFMDD 121

Query: 151 FRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENE 210
           FRK YKEANPDSK VK+VAKEGG +WKSMTDEEKK Y DKAAELKAE +KALES NAENE
Sbjct: 122 FRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALESDNAENE 181

Query: 211 DDE--KETEEVAEKEVEEITDE 227
           DDE     +EVA+ E+ +  +E
Sbjct: 182 DDEGVSSEKEVADLELRDKEEE 200

[Close]
BLAST of Lsi09G008460 vs. TrEMBL
Match: B9HG86_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15320g PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.3e-56
Identity = 138/202 (68.32%), Postives = 161/202 (79.70%), Query Frame = 1 

Query: 31  SRKRVEATPADVAV---TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMN 90
           +RKRVEA   D +V   T  SLVRAKDGSAF +C+EC K VPVALIS HSCSLDAKI+MN
Sbjct: 2   ARKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMN 61

Query: 91  LESQTVEKQAQAKQ-PAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDD 150
           LE+Q VEK  +AKQ PAERK+ + +EPK KK++ EK+G+   DPNA KRPPTAFF+FMDD
Sbjct: 62  LEAQVVEKPTEAKQKPAERKKGSSTEPKLKKAKKEKKGR---DPNASKRPPTAFFLFMDD 121

Query: 151 FRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENE 210
           FRK YKEANPDSK VK+VAKEGG +WKSMTDEEKK Y DKAAELKAE +KALES NAENE
Sbjct: 122 FRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALESDNAENE 181

Query: 211 DDE--KETEEVAEKEVEEITDE 227
           DDE     +EVA+ E+ +  +E
Sbjct: 182 DDEGVSSEKEVADLELRDKEEE 200

[Close]
BLAST of Lsi09G008460 vs. TAIR10
Match: AT5G23420.1 (AT5G23420.1 high-mobility group box 6)

HSP 1 Score: 171.0 bits (432), Expect = 8.3e-43
Identity = 113/202 (55.94%), Postives = 147/202 (72.77%), Query Frame = 1 

Query: 30  KSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLE 89
           K RKRVEA  +  + T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NLE
Sbjct: 12  KQRKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLE 71

Query: 90  SQTVEKQAQA-KQPAERKRSAPSEPKAKK-SRTEKRGKKDKDPNAPKRPPTAFFVFMDDF 149
           +Q VE QA+A K+PAE+K++    PK K+  +T    K     N PKRP TAFF+FM DF
Sbjct: 72  AQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDF 131

Query: 150 RKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNA--EN 209
           RK++K  +  S   K+ AK GGEKWKS+T+EEKK Y DKAAELKAEY K+LES +A  E 
Sbjct: 132 RKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEE 191

Query: 210 EDDEKETEEVAEKEVEEITDEE 228
           ED+EK++++V + E +++ D++
Sbjct: 192 EDEEKQSDDVDDAEEKQVDDDD 210

[Close]
BLAST of Lsi09G008460 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 94.7 bits (234), Expect = 7.6e-20
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1 

Query: 106 KRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVKEVA 165
           KR AP+E K  K  T K  K  KDPN PKR P+AFFVF++DFR ++K+ NP+ K V  V 
Sbjct: 27  KRKAPAE-KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVG 86

Query: 166 KEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAEKEVEEITD 225
           K GG+KWKSM+  EK PY++KAA+ KAEYEK +++ N   E+   E    +EK   EI D
Sbjct: 87  KAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDE----SEKSRSEIND 143

Query: 226 EE 228
           E+
Sbjct: 147 ED 143

[Close]
BLAST of Lsi09G008460 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 1 

Query: 99  AKQPAERKRSAPSEPKAKKSRTEKRGKKD-KDPNAPKRPPTAFFVFMDDFRKSYKEANPD 158
           AK   E + S  S  K K ++   RGK   KDPN PKRP +AFFVFM+DFR+++K+ NP 
Sbjct: 4   AKSKTETRSSKLSVTK-KPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 63

Query: 159 SKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENEDDEKETEEVAE 218
           +K V  V K  G+KWKS++D EK PY  KA + K EYEK +++ N + E+  KE EE ++
Sbjct: 64  NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEE-SD 123

Query: 219 KEVEEITDEE 228
           K V E+ DE+
Sbjct: 124 KSVSEVNDED 131

[Close]
BLAST of Lsi09G008460 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-16
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 1 

Query: 104 ERKRSAPSEPKAKKSRTEKRGKKD-KDPNAPKRPPTAFFVFMDDFRKSYKEANPDSKGVK 163
           E K  A S  +  K+R  K GKK  KDPN PKRPP+AFFVF++DFRK +  ANP++K V 
Sbjct: 5   ESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVA 64

Query: 164 EVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLN---AENEDDEKETEEVAEKE 223
            V K  G +WK+MTDE+K PY  KA   K EY K ++  N   A   + E++  + ++ E
Sbjct: 65  TVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSE 124

Query: 224 VEEITDEE 228
           V+E   EE
Sbjct: 125 VDEAVSEE 132

[Close]
BLAST of Lsi09G008460 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-16
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1 

Query: 99  AKQPAERKRSAPSEPKAKKSRTEKRGKKD--KDPNAPKRPPTAFFVFMDDFRKSYKEANP 158
           AK  AE + +     K   ++   +G K   KDPN PKRP +AFFVFM+DFR +YKE +P
Sbjct: 4   AKSKAETRST-----KLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHP 63

Query: 159 DSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLN 203
            +K V  V K GGEKWKS++D EK PY  KA + K EYEK +++ N
Sbjct: 64  KNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYN 104

[Close]
BLAST of Lsi09G008460 vs. NCBI nr
Match: gi|449464956|ref|XP_004150195.1| (PREDICTED: high mobility group B protein 7 [Cucumis sativus])

HSP 1 Score: 341.7 bits (875), Expect = 1.0e-90
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 1 

Query: 23  MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 82
           MAGGGSSKSRKRVEATPADVA TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60

Query: 83  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 142
           KIRMNLESQTVEKQ Q+K+PAE+KRSA SEPK KKSRTEK+GKKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRMNLESQTVEKQTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFI 120

Query: 143 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLN 202
           FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALES N
Sbjct: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESRN 180

Query: 203 AENEDDEKETEEV--AEKEVEEITDEE 228
           AENEDDEKETEE    E+EVE IT+EE
Sbjct: 181 AENEDDEKETEETEEIEEEVEGITEEE 207

[Close]
BLAST of Lsi09G008460 vs. NCBI nr
Match: gi|659131213|ref|XP_008465567.1| (PREDICTED: high mobility group B protein 7 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.4e-63
Identity = 130/143 (90.91%), Postives = 140/143 (97.90%), Query Frame = 1 

Query: 23  MAGGGSSKSRKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 82
           MAGGGSSKSRKRVEATPADVA TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA
Sbjct: 1   MAGGGSSKSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60

Query: 83  KIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFV 142
           KIRMNLE+QTVEKQ Q+K+PAE+K+SA SEPKAKKSRT+K+GKKDKDPNAPKRPPTAFF+
Sbjct: 61  KIRMNLEAQTVEKQTQSKKPAEKKKSASSEPKAKKSRTDKKGKKDKDPNAPKRPPTAFFI 120

Query: 143 FMDDFRKSYKEANPDSKGVKEVA 166
           FMDDFRKS+KEANPDSKGVKEV+
Sbjct: 121 FMDDFRKSFKEANPDSKGVKEVS 143

[Close]
BLAST of Lsi09G008460 vs. NCBI nr
Match: gi|1009138681|ref|XP_015886714.1| (PREDICTED: high mobility group B protein 7-like [Ziziphus jujuba])

HSP 1 Score: 237.3 bits (604), Expect = 2.7e-59
Identity = 148/211 (70.14%), Postives = 166/211 (78.67%), Query Frame = 1 

Query: 25  GGGSSKS-----RKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHSCS 84
           GGGS KS     RKRVEAT  D +  GP LVR KDGSAFARC+EC K VPVALIS HSCS
Sbjct: 2   GGGSLKSNPAKARKRVEAT--DESGAGPCLVRGKDGSAFARCEECNKDVPVALISFHSCS 61

Query: 85  LDAKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTA 144
           LDAKI+MNLESQ VEK  +AK+ +ER +S   EP AK+++ EK  KK K+ N PKRPPTA
Sbjct: 62  LDAKIKMNLESQVVEKSTEAKKASERNKSTSKEPTAKRAKNEK-AKKGKNSNKPKRPPTA 121

Query: 145 FFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 204
           FF+FMDDFRK +KEANPDSKGVK VAKEGG KWKSMTDEEKK Y DKAAELKAEY+KALE
Sbjct: 122 FFLFMDDFRKEFKEANPDSKGVKTVAKEGGAKWKSMTDEEKKQYTDKAAELKAEYDKALE 181

Query: 205 SLNAENED-DEKETEEVAE--KEVEEITDEE 228
           S NAE+ D DE   +E AE  KEVEE++DEE
Sbjct: 182 SDNAEDGDVDEGTEKEEAEDNKEVEEVSDEE 209

[Close]
BLAST of Lsi09G008460 vs. NCBI nr
Match: gi|702485193|ref|XP_010034169.1| (PREDICTED: high mobility group B protein 7 [Eucalyptus grandis])

HSP 1 Score: 236.9 bits (603), Expect = 3.5e-59
Identity = 143/214 (66.82%), Postives = 167/214 (78.04%), Query Frame = 1 

Query: 23  MAGGGSSKS-----RKRVEATPADVAVTGPSLVRAKDGSAFARCDECGKSVPVALISMHS 82
           MAGGGSSKS     RKRVE   A  A    SLVR KDGSAFARC+EC K VPVALISMHS
Sbjct: 1   MAGGGSSKSNAPKARKRVEVDAAAAAAASSSLVRGKDGSAFARCEECNKDVPVALISMHS 60

Query: 83  CSLDAKIRMNLESQTVEKQAQAKQPAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPP 142
           C LDAKI+MNLE+Q +E+ A+AK+     R   SEPKAKK++TEK+ KK KD NAPKRP 
Sbjct: 61  CGLDAKIKMNLEAQVMERPAEAKKKPAVDRKRSSEPKAKKAKTEKKSKKGKDANAPKRPA 120

Query: 143 TAFFVFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKA 202
           TAFFVFMDDFRK+YKEANPDSKGVKEVAK+GGEKWKSM+DEEKKPY DKA+ELKAE+ KA
Sbjct: 121 TAFFVFMDDFRKAYKEANPDSKGVKEVAKQGGEKWKSMSDEEKKPYLDKASELKAEFNKA 180

Query: 203 LESLNAENEDDEK--ETEEVAEKEV--EEITDEE 228
           +E+ NA + ++E+  + EE A++E   EE   EE
Sbjct: 181 MEAHNAGDGENEEGSDKEEAADEEAANEETAGEE 214

[Close]
BLAST of Lsi09G008460 vs. NCBI nr
Match: gi|743861855|ref|XP_011031229.1| (PREDICTED: high mobility group B protein 7-like [Populus euphratica])

HSP 1 Score: 235.7 bits (600), Expect = 7.8e-59
Identity = 139/196 (70.92%), Postives = 162/196 (82.65%), Query Frame = 1 

Query: 31  SRKRVEATPADVAV---TGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMN 90
           ++KRVEA   D +V   T  SLVRAKDGSAFA+C+EC K VPVALIS HSCSLDAKI+MN
Sbjct: 2   AKKRVEAESTDGSVDANTTTSLVRAKDGSAFAKCEECKKDVPVALISFHSCSLDAKIKMN 61

Query: 91  LESQTVEKQAQAKQ-PAERKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFFVFMDD 150
           LE+Q VEK  +AKQ PAERK+ + +EPK KK++ EK+G   +DPNAPKRPPTAFF+FMDD
Sbjct: 62  LEAQVVEKPTEAKQKPAERKKGSSTEPKLKKAKKEKKG---RDPNAPKRPPTAFFLFMDD 121

Query: 151 FRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESLNAENE 210
           FRK YKEANPDSK VK+VAKEGG +WKSMTDEEKK Y DKAAELKAEY+KALES NAENE
Sbjct: 122 FRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAEYDKALESDNAENE 181

Query: 211 DDE--KETEEVAEKEV 221
           DDE     +EVA++E+
Sbjct: 182 DDEGVSSEKEVADQEL 194

The following BLAST results are available for this feature:
BLAST of Lsi09G008460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HMGB7_ARATH1.5e-4155.94High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1[more]
HMGB1_ARATH1.3e-1850.82High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1[more]
HMGL_VICFA3.7e-1643.17HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_IPONI8.2e-1648.25HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGB3_ARATH8.2e-1647.33High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1[more]
BLAST of Lsi09G008460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059AAF1_EUCGR2.4e-5966.82Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00336 PE=4 SV=1[more]
W9RX30_9ROSA7.9e-5865.26High mobility group B protein 7 OS=Morus notabilis GN=L484_023080 PE=4 SV=1[more]
A0A061E3U5_THECC1.0e-5768.22High-mobility group box 6 OS=Theobroma cacao GN=TCM_007659 PE=4 SV=1[more]
A9PB77_POPTR5.1e-5768.81Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
B9HG86_POPTR4.3e-5668.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15320g PE=4 SV=1[more]
BLAST of Lsi09G008460 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23420.18.3e-4355.94 high-mobility group box 6[more]
AT3G51880.27.6e-2050.82 high mobility group B1[more]
AT1G20693.11.3e-1647.69 high mobility group B2[more]
AT2G17560.13.0e-1646.09 high mobility group B4[more]
AT1G20696.23.9e-1649.06 high mobility group B3[more]
BLAST of Lsi09G008460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464956|ref|XP_004150195.1|1.0e-9091.79PREDICTED: high mobility group B protein 7 [Cucumis sativus][more]
gi|659131213|ref|XP_008465567.1|1.4e-6390.91PREDICTED: high mobility group B protein 7 [Cucumis melo][more]
gi|1009138681|ref|XP_015886714.1|2.7e-5970.14PREDICTED: high mobility group B protein 7-like [Ziziphus jujuba][more]
gi|702485193|ref|XP_010034169.1|3.5e-5966.82PREDICTED: high mobility group B protein 7 [Eucalyptus grandis][more]
gi|743861855|ref|XP_011031229.1|7.8e-5970.92PREDICTED: high mobility group B protein 7-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0008150 biological_process
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0000741 karyogamy
biological_process GO:0009987 cellular process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000785 chromatin
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0005488 binding
molecular_function GO:0003682 chromatin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G008460.1Lsi09G008460.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainGENE3DG3DSA:1.10.30.10coord: 132..199
score: 3.1
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 133..199
score: 3.5
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 132..203
score: 4.6
IPR009071High mobility group box domainPROFILEPS50118HMG_BOX_2coord: 133..202
score: 19
IPR009071High mobility group box domainunknownSSF47095HMG-boxcoord: 122..199
score: 2.09
NoneNo IPR availableunknownCoilCoilcoord: 184..226
scor
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 186..206
score: 9.0E-5coord: 167..186
score: 9.
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 54..71
score: 9.4E-63coord: 94..227
score: 9.4
NoneNo IPR availablePANTHERPTHR13711:SF147SUBFAMILY NOT NAMEDcoord: 94..227
score: 9.4E-63coord: 54..71
score: 9.4