Cp4.1LG01g19480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g19480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHigh mobility group B protein 7
LocationCp4.1LG01 : 16515719 .. 16518554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCCAAGCCCAAGCCCAATCGCAAGCCCAATCCCAGGTTTATTCAAGGCCCAATAACCTAGCCCAGGTTTATCAAAGGCCCATTTGACGGGAGTATGAATCTGGAACGTCGATACAAAATTGTATAAAATCAACGGTAGAAGATTGATCCAAGTCAGAGATCTTCGTGAAACGATATAACATGCGAGGATTAAAGGCGCCAAAATTTAGATGACAGTGGCCACTTGATTTTTCCACCGCGAAAAACTTCCCATTACCATCAGTTCTTCTGCATTTTCGGAGTCACCGATTCAGCGGCGGAGAAGAGGAAATGGCCGTTCGAAGATCGTCGAGTTCGAGGAAGAGAGTGGATGCTGCTCCCTCCGACGCCGCCACCACTGGCCCTTCCCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGGTGCGTGTTTCTTTCCATTTTCTCTATGGATGTTATGGTTTGTACACCGACTGGTTGGAGAGCTAAAGAGGACGGAGTCACATTCCTGAATCTTTGTAACTTGTTTTCTTTATGCTTTGATTTCTACGTTGGTTGAATCGGCGTGTCTGTGTTACACTTTCCTAACACTCCATTTCTTCGAATATTTTCGGAACAAGTTGTGTTTGGAGTGATTTTTGCTTTGGCATTGATAATATTTGTCTTTTTGCTTGCGTTTTATTCCGATTGTGTTTTAAAGTTGAATGAAATATTTGCTTTCGTTATGAATGTTCTTGTTGATGTACGATTATTTCTTACCTTTATAACTTGGCGTGTTTTTACTGCTTTTGTTTTTTGTTGGTTTCATTGGTGTGTTCGTACTGTACCTTCCTAACGTTCCATTTCTTCGATTATTGTCGGAAGAGATTACAGTTTACGGTGTTTTCCTTTTGTTTGTTGTTCATTCAATAATAATGTGTGGTTTTCTGTTCGCACTTTTAGTTTGATTTTGATAGTTAATGAAAACATCATTAAGTTTCTTGACAATGGAAGAATCTGATTTCTCTGATTTCTCTGATTTGAATGGTTGATTTCTGGCCGTTACAGTGATGAGTGCGGCAAAAGTGTTCCGGCCGCCCTAATCAGCATGCACAGCTGTAGCCTCGATACCAAAATTAGAATGAATTTAGGTAATATCCGTGTGGATTCGTGAATATTTTTTTTTCTTTGGGATTCTTTTCTGATTTGGAACTCTTACTGTTCTCGTTTCCTGTAGAGGCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGCCAGCTGAAAGGTGTCTTATCCGTCGCTATGCTCCTCTCTCTGCACGTTCTTCTTTATTCTTACCTGGTTGAGCTGATGTTTTGAGTTAAATTAACTACAGGAAAAGATCAGCACCATCGGAACCAAAAGCCACTAAATCCAAAACGGACAAGAGGAAGAAGAAAGACAAAGATCCAAATGCCCCCAAGCGCCCTCCTACAGCCTTCTTTATCTTCATGTATGCAAATTTCCCACATTCCTTCTGCTCTCAATTGTCAGAATCATTAGATTTATAGTATTATTTCCTATTTACTTGAATTTTAACTGAATTTCAAATAATTGTAATACTTCAGGGACGACTTCAGAAAGTCATTTAAAGAAGCAAATCCTGAGTCTAAAGGCGTTAAAGAGGTTAGCACAGACCCATATCGCTTTGTGTAGTAACGGTGAGAGGAGAGAGAAATGAGTGTCAATGAGGATGCTGTCACGAAAGGGGTGGATTGTGAGTTCCCATGTTGGTTGGAGAGAAGAACGAAACTTTTTTTATAAGGGTGAAAATCTATTCCTAGTAGACACGTTTCAAAAACTTTGAGGGGAAGGAAAGCTCAAAGAGAATAATATCTGTTAGCGGTGGGCTTGTATTGATATAGTAATTATGACGAGGGATCAAATTATTGTATGCTCTGTCTCATGATCAAGTATTTCAATCTTTTCAGGTTGCAAAGGAGGGTGGTGAGAAATGGAAATCAATGACTGATGAAGTGAGATTACTTGCCATCTAAAAGCACGTCTATGTTTATGAATTCTGTCATTTAAAACTTAAGTTGATTGAACAGGAGAAGAAGCCTTACCAGGATAAAGCTGCTGAGCTGAAAGCAGAGTACGAAAAAGCCTTGGAAACCCGAAACGCTGAGAACGAAGATGTGAGATTTGAGCTCTCAACTGTCTGAATCCATTTGATTATTCATTCAAATGCTAATGTGGGATCTTTGTTCAGGATGAGAAAGACACAGAAGAGATTACAGAGAAGGAGGCAGAGAAAGTAACAGATGAGTAAAACATTCCCAAGTTAGTCTTTTGTGATAGTAAATAGCTAGAAACAGCTTCATCTTGTAAATTCTGTCTAATTTAGCCACAAACCGCTGTTGGATTCTATGGCTGCGTTAGAAGCAAATATAGCAAATATAGTACAAATACTTGATTTTTGTCCTAAACCTGTCTAGTAGACACGTTTTAAAACCTTGAAAAAAAACCTCTATCTACTAGACACGTTCTAAAACCTTGAAAAAAAGGTTGGTGACCTCTTTTTTTTTTTTTTTCTTCTTTCTGTTAGGTTTGTGTCTTTTTCTTTGAATTTGAACCCATTTGTCAGGACTGAATTTGAACCCATTTGTCAGGACTGAATTTGAACCCATTCTAACTAACCCAATGAGAATTAGAGTGCCTAATGGGTTGGGCTTTTGTAAAACTTTTTGGCCTTTTCTGCCAGTTTTATGGCCATATGCGTCCGCCATTTGTTTGAATGATATCATATTTTGGTGCATGTTCTTGGAATATGCGACTATGTCCACATTTCTCTTTCTATTATTGGACGTATAC

mRNA sequence

CATCCAAGCCCAAGCCCAATCGCAAGCCCAATCCCAGGTTTATTCAAGGCCCAATAACCTAGCCCAGGTTTATCAAAGGCCCATTTGACGGGAGTATGAATCTGGAACGTCGATACAAAATTGTATAAAATCAACGGTAGAAGATTGATCCAAGTCAGAGATCTTCGTGAAACGATATAACATGCGAGGATTAAAGGCGCCAAAATTTAGATGACAGTGGCCACTTGATTTTTCCACCGCGAAAAACTTCCCATTACCATCAGTTCTTCTGCATTTTCGGAGTCACCGATTCAGCGGCGGAGAAGAGGAAATGGCCGTTCGAAGATCGTCGAGTTCGAGGAAGAGAGTGGATGCTGCTCCCTCCGACGCCGCCACCACTGGCCCTTCCCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGATGAGTGCGGCAAAAGTGTTCCGGCCGCCCTAATCAGCATGCACAGCTGTAGCCTCGATACCAAAATTAGAATGAATTTAGAGGCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGCCAGCTGAAAGGAAAAGATCAGCACCATCGGAACCAAAAGCCACTAAATCCAAAACGGACAAGAGGAAGAAGAAAGACAAAGATCCAAATGCCCCCAAGCGCCCTCCTACAGCCTTCTTTATCTTCATGTTGCAAAGGAGGGTGGAGAAGAAGCCTTACCAGGATAAAGCTGCTGAGCTGAAAGCAGAGTACGAAAAAGCCTTGGAAACCCGAAACGCTGAGAACGAAGATGATGAGAAAGACACAGAAGAGATTACAGAGAAGGAGGCAGAGAAAGTAACAGATGAGTAAAACATTCCCAAGTTAGTCTTTTGTGATAGTAAATAGCTAGAAACAGCTTCATCTTGTAAATTCTGTCTAATTTAGCCACAAACCGCTGTTGGATTCTATGGCTGCGTTAGAAGCAAATATAGCAAATATAGTACAAATACTTGATTTTTGTCCTAAACCTGTCTAGTAGACACGTTTTAAAACCTTGAAAAAAAACCTCTATCTACTAGACACGTTCTAAAACCTTGAAAAAAAGGTTGGTGACCTCTTTTTTTTTTTTTTTCTTCTTTCTGTTAGGTTTGTGTCTTTTTCTTTGAATTTGAACCCATTTGTCAGGACTGAATTTGAACCCATTTGTCAGGACTGAATTTGAACCCATTCTAACTAACCCAATGAGAATTAGAGTGCCTAATGGGTTGGGCTTTTGTAAAACTTTTTGGCCTTTTCTGCCAGTTTTATGGCCATATGCGTCCGCCATTTGTTTGAATGATATCATATTTTGGTGCATGTTCTTGGAATATGCGACTATGTCCACATTTCTCTTTCTATTATTGGACGTATAC

Coding sequence (CDS)

ATGGCCGTTCGAAGATCGTCGAGTTCGAGGAAGAGAGTGGATGCTGCTCCCTCCGACGCCGCCACCACTGGCCCTTCCCTTGTGAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGATGAGTGCGGCAAAAGTGTTCCGGCCGCCCTAATCAGCATGCACAGCTGTAGCCTCGATACCAAAATTAGAATGAATTTAGAGGCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGCCAGCTGAAAGGAAAAGATCAGCACCATCGGAACCAAAAGCCACTAAATCCAAAACGGACAAGAGGAAGAAGAAAGACAAAGATCCAAATGCCCCCAAGCGCCCTCCTACAGCCTTCTTTATCTTCATGTTGCAAAGGAGGGTGGAGAAGAAGCCTTACCAGGATAAAGCTGCTGAGCTGAAAGCAGAGTACGAAAAAGCCTTGGAAACCCGAAACGCTGAGAACGAAGATGATGAGAAAGACACAGAAGAGATTACAGAGAAGGAGGCAGAGAAAGTAACAGATGAGTAA

Protein sequence

MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQRRVEKKPYQDKAAELKAEYEKALETRNAENEDDEKDTEEITEKEAEKVTDE
Homology
[Close]
BLAST of Cp4.1LG01g19480 vs. Swiss-Prot
Match: HMGB7_ARATH (High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 91/198 (45.96%), Postives = 116/198 (58.59%), Query Frame = 1 

Query: 10  RKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEAQ 69
           RKRV+A  S  + T  +L RAKDGSAFA C+ C KSV  ALISMH+CSLD KIR+NLEAQ
Sbjct: 14  RKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQ 73

Query: 70  TVEKQTQAKK-PAERKRSAPSEPKATK-SKTDKRKKKDKDPNAPKRPPTAFF-------- 129
            VE Q +AKK PAE+K++    PK  +  KT+  KK     N PKRP TAFF        
Sbjct: 74  VVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRK 133

Query: 130 --------------------IFMLQRRVEKKPYQDKAAELKAEYEKALETRNA--ENEDD 176
                                +      EKK Y DKAAELKAEY K+LE+ +A  E ED+
Sbjct: 134 TFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEEDE 193

[Close]
BLAST of Cp4.1LG01g19480 vs. TrEMBL
Match: B9RGI3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_1454160 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 108/199 (54.27%), Postives = 129/199 (64.82%), Query Frame = 1 

Query: 9   SRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEA 68
           +RKRV+A   D AT   S+VR KDGSAFARCDEC K VP ALISMHSCSL+ +I+MNLEA
Sbjct: 2   ARKRVEA--EDTATAANSMVRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEA 61

Query: 69  QTVEKQTQA-KKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQ--- 128
           Q VEK  +  KKPAERK+   +EPKA K+K DK   K  +PN PKRPPTAFFIF+ +   
Sbjct: 62  QIVEKPAETTKKPAERKKPTSTEPKAKKAKKDK---KPNNPNKPKRPPTAFFIFLDEFRK 121

Query: 129 ------------RRV--------------EKKPYQDKAAELKAEYEKAL-ETRNAENEDD 176
                       +RV              EKKPY DKA ELKAEY+KAL E  NAEN+DD
Sbjct: 122 TFKEANPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYDKALGEVNNAENKDD 181

[Close]
BLAST of Cp4.1LG01g19480 vs. TrEMBL
Match: A0A061E3U5_THECC (High-mobility group box 6 OS=Theobroma cacao GN=TCM_007659 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 112/202 (55.45%), Postives = 128/202 (63.37%), Query Frame = 1 

Query: 10  RKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEAQ 69
           RKRVDAA + A  +  SLVRAKDGSAFA+C+EC K+VP ALISMHSCSLD KI+MNLEAQ
Sbjct: 13  RKRVDAASTAAPAS--SLVRAKDGSAFAKCEECNKTVPVALISMHSCSLDAKIKMNLEAQ 72

Query: 70  TVEKQTQA-KKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQRR-- 129
            +EK  +  KKPAERK+ A +E   +  K  K+ KK KDPNAPKRPPTAFF+FM   R  
Sbjct: 73  VIEKPAEVKKKPAERKKPASTE---SNPKKPKKLKKGKDPNAPKRPPTAFFLFMDDFRKS 132

Query: 130 ---------------------------VEKKPYQDKAAELKAEYEKALETRN---AENED 176
                                       EKKPY DKAAELKAEYEKALE  N    ENED
Sbjct: 133 YKEANPDAKGVTGVAKEGGEKWKSMSEEEKKPYVDKAAELKAEYEKALEEVNDADNENED 192

[Close]
BLAST of Cp4.1LG01g19480 vs. TrEMBL
Match: A9PB77_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-32
Identity = 106/202 (52.48%), Postives = 127/202 (62.87%), Query Frame = 1 

Query: 9   SRKRVDAAPSDA---ATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMN 68
           +RKRV+A  +D    A T  SLVRAKDGSAF +C+EC K VP ALIS HSCSLD KI+MN
Sbjct: 2   ARKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMN 61

Query: 69  LEAQTVEKQTQAK-KPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQ 128
           LEAQ VEK T+AK KPAERK+ + +EPK  K+   K++KK +DPNAPKRPPTAFF+FM  
Sbjct: 62  LEAQVVEKPTEAKQKPAERKKGSSTEPKLKKA---KKEKKGRDPNAPKRPPTAFFLFMDD 121

Query: 129 RR-----------------------------VEKKPYQDKAAELKAEYEKALETRNAENE 176
            R                              EKK Y DKAAELKAE +KALE+ NAENE
Sbjct: 122 FRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALESDNAENE 181

[Close]
BLAST of Cp4.1LG01g19480 vs. TrEMBL
Match: B9HG86_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15320g PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.7e-32
Identity = 105/202 (51.98%), Postives = 126/202 (62.38%), Query Frame = 1 

Query: 9   SRKRVDAAPSDA---ATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMN 68
           +RKRV+A  +D    A T  SLVRAKDGSAF +C+EC K VP ALIS HSCSLD KI+MN
Sbjct: 2   ARKRVEAESTDGSVDANTTTSLVRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMN 61

Query: 69  LEAQTVEKQTQAK-KPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQ 128
           LEAQ VEK T+AK KPAERK+ + +EPK  K+   K++KK +DPNA KRPPTAFF+FM  
Sbjct: 62  LEAQVVEKPTEAKQKPAERKKGSSTEPKLKKA---KKEKKGRDPNASKRPPTAFFLFMDD 121

Query: 129 RR-----------------------------VEKKPYQDKAAELKAEYEKALETRNAENE 176
            R                              EKK Y DKAAELKAE +KALE+ NAENE
Sbjct: 122 FRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAENDKALESDNAENE 181

[Close]
BLAST of Cp4.1LG01g19480 vs. TrEMBL
Match: I3SCF2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 99/200 (49.50%), Postives = 127/200 (63.50%), Query Frame = 1 

Query: 6   SSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMN 65
           +S  RKR+DA  S AA+    LVR++DGSAFARC+EC KSVP ALISMHSCSL+ KI+MN
Sbjct: 2   ASQGRKRIDAVDSRAASV---LVRSRDGSAFARCEECNKSVPVALISMHSCSLEAKIKMN 61

Query: 66  LEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQR 125
           L+AQ +E+  +AKK  ERK+ +  EPKA ++KT+K KK + DPN PKRPPTAFF+F+   
Sbjct: 62  LDAQVIEQANEAKK-TERKKPSSKEPKAKRAKTEKAKKVE-DPNQPKRPPTAFFVFLDDF 121

Query: 126 R-----------------------------VEKKPYQDKAAELKAEYEKALETRN-AENE 176
           R                              EKKPY +K AELK EYEKA+   N AE+E
Sbjct: 122 RKEFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPYLEKVAELKEEYEKAMANYNAAEDE 181

[Close]
BLAST of Cp4.1LG01g19480 vs. TAIR10
Match: AT5G23420.1 (AT5G23420.1 high-mobility group box 6)

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 91/198 (45.96%), Postives = 116/198 (58.59%), Query Frame = 1 

Query: 10  RKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEAQ 69
           RKRV+A  S  + T  +L RAKDGSAFA C+ C KSV  ALISMH+CSLD KIR+NLEAQ
Sbjct: 14  RKRVEAETS--SNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQ 73

Query: 70  TVEKQTQAKK-PAERKRSAPSEPKATK-SKTDKRKKKDKDPNAPKRPPTAFF-------- 129
            VE Q +AKK PAE+K++    PK  +  KT+  KK     N PKRP TAFF        
Sbjct: 74  VVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRK 133

Query: 130 --------------------IFMLQRRVEKKPYQDKAAELKAEYEKALETRNA--ENEDD 176
                                +      EKK Y DKAAELKAEY K+LE+ +A  E ED+
Sbjct: 134 TFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEEDE 193

[Close]
BLAST of Cp4.1LG01g19480 vs. NCBI nr
Match: gi|449464956|ref|XP_004150195.1| (PREDICTED: high mobility group B protein 7 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.1e-50
Identity = 132/206 (64.08%), Postives = 149/206 (72.33%), Query Frame = 1 

Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDT 60
           MA   SS SRKRV+A P+D A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD 
Sbjct: 1   MAGGGSSKSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKR------- 120
           KIRMNLE+QTVEKQTQ+KKPAE+KRSA SEPK  KS+T+K+ KKDKDPNAPKR       
Sbjct: 61  KIRMNLESQTVEKQTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFI 120

Query: 121 ------------PPTAFFIFMLQRR----------VEKKPYQDKAAELKAEYEKALETRN 176
                        P +  +  + +            EKKPYQDKAAELKAEYEKALE+RN
Sbjct: 121 FMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALESRN 180

[Close]
BLAST of Cp4.1LG01g19480 vs. NCBI nr
Match: gi|659131213|ref|XP_008465567.1| (PREDICTED: high mobility group B protein 7 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 2.9e-45
Identity = 103/122 (84.43%), Postives = 110/122 (90.16%), Query Frame = 1 

Query: 1   MAVRRSSSSRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDT 60
           MA   SS SRKRV+A P+D A TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD 
Sbjct: 1   MAGGGSSKSRKRVEATPADVAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDA 60

Query: 61  KIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFI 120
           KIRMNLEAQTVEKQTQ+KKPAE+K+SA SEPKA KS+TDK+ KKDKDPNAPKRPPTAFFI
Sbjct: 61  KIRMNLEAQTVEKQTQSKKPAEKKKSASSEPKAKKSRTDKKGKKDKDPNAPKRPPTAFFI 120

Query: 121 FM 123
           FM
Sbjct: 121 FM 122

[Close]
BLAST of Cp4.1LG01g19480 vs. NCBI nr
Match: gi|743861855|ref|XP_011031229.1| (PREDICTED: high mobility group B protein 7-like [Populus euphratica])

HSP 1 Score: 154.8 bits (390), Expect = 1.4e-34
Identity = 106/195 (54.36%), Postives = 128/195 (65.64%), Query Frame = 1 

Query: 9   SRKRVDAAPSDA---ATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMN 68
           ++KRV+A  +D    A T  SLVRAKDGSAFA+C+EC K VP ALIS HSCSLD KI+MN
Sbjct: 2   AKKRVEAESTDGSVDANTTTSLVRAKDGSAFAKCEECKKDVPVALISFHSCSLDAKIKMN 61

Query: 69  LEAQTVEKQTQAK-KPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQ 128
           LEAQ VEK T+AK KPAERK+ + +EPK  K+   K++KK +DPNAPKRPPTAFF+FM  
Sbjct: 62  LEAQVVEKPTEAKQKPAERKKGSSTEPKLKKA---KKEKKGRDPNAPKRPPTAFFLFMDD 121

Query: 129 RR-----------------------------VEKKPYQDKAAELKAEYEKALETRNAENE 169
            R                              EKK Y DKAAELKAEY+KALE+ NAENE
Sbjct: 122 FRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQYVDKAAELKAEYDKALESDNAENE 181

[Close]
BLAST of Cp4.1LG01g19480 vs. NCBI nr
Match: gi|255544145|ref|XP_002513135.1| (PREDICTED: high mobility group B protein 7 [Ricinus communis])

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 108/199 (54.27%), Postives = 129/199 (64.82%), Query Frame = 1 

Query: 9   SRKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEA 68
           +RKRV+A   D AT   S+VR KDGSAFARCDEC K VP ALISMHSCSL+ +I+MNLEA
Sbjct: 2   ARKRVEA--EDTATAANSMVRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEA 61

Query: 69  QTVEKQTQA-KKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQ--- 128
           Q VEK  +  KKPAERK+   +EPKA K+K DK   K  +PN PKRPPTAFFIF+ +   
Sbjct: 62  QIVEKPAETTKKPAERKKPTSTEPKAKKAKKDK---KPNNPNKPKRPPTAFFIFLDEFRK 121

Query: 129 ------------RRV--------------EKKPYQDKAAELKAEYEKAL-ETRNAENEDD 176
                       +RV              EKKPY DKA ELKAEY+KAL E  NAEN+DD
Sbjct: 122 TFKEANPDSKDVKRVAKEAGEKWKAMTDEEKKPYADKATELKAEYDKALGEVNNAENKDD 181

[Close]
BLAST of Cp4.1LG01g19480 vs. NCBI nr
Match: gi|590689342|ref|XP_007043200.1| (High-mobility group box 6 [Theobroma cacao])

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-33
Identity = 112/202 (55.45%), Postives = 128/202 (63.37%), Query Frame = 1 

Query: 10  RKRVDAAPSDAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLDTKIRMNLEAQ 69
           RKRVDAA + A  +  SLVRAKDGSAFA+C+EC K+VP ALISMHSCSLD KI+MNLEAQ
Sbjct: 13  RKRVDAASTAAPAS--SLVRAKDGSAFAKCEECNKTVPVALISMHSCSLDAKIKMNLEAQ 72

Query: 70  TVEKQTQA-KKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFFIFMLQRR-- 129
            +EK  +  KKPAERK+ A +E   +  K  K+ KK KDPNAPKRPPTAFF+FM   R  
Sbjct: 73  VIEKPAEVKKKPAERKKPASTE---SNPKKPKKLKKGKDPNAPKRPPTAFFLFMDDFRKS 132

Query: 130 ---------------------------VEKKPYQDKAAELKAEYEKALETRN---AENED 176
                                       EKKPY DKAAELKAEYEKALE  N    ENED
Sbjct: 133 YKEANPDAKGVTGVAKEGGEKWKSMSEEEKKPYVDKAAELKAEYEKALEEVNDADNENED 192

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g19480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HMGB7_ARATH4.4e-2545.96High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1[more]
BLAST of Cp4.1LG01g19480 vs. TrEMBL
Match NameE-valueIdentityDescription
B9RGI3_RICCO1.8e-3354.27DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_1454160 PE=4 SV=... [more]
A0A061E3U5_THECC1.8e-3355.45High-mobility group box 6 OS=Theobroma cacao GN=TCM_007659 PE=4 SV=1[more]
A9PB77_POPTR1.2e-3252.48Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
B9HG86_POPTR9.7e-3251.98Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15320g PE=4 SV=1[more]
I3SCF2_LOTJA1.1e-3049.50Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Cp4.1LG01g19480 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23420.12.5e-2645.96 high-mobility group box 6[more]
BLAST of Cp4.1LG01g19480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464956|ref|XP_004150195.1|5.1e-5064.08PREDICTED: high mobility group B protein 7 [Cucumis sativus][more]
gi|659131213|ref|XP_008465567.1|2.9e-4584.43PREDICTED: high mobility group B protein 7 [Cucumis melo][more]
gi|743861855|ref|XP_011031229.1|1.4e-3454.36PREDICTED: high mobility group B protein 7-like [Populus euphratica][more]
gi|255544145|ref|XP_002513135.1|2.5e-3354.27PREDICTED: high mobility group B protein 7 [Ricinus communis][more]
gi|590689342|ref|XP_007043200.1|2.5e-3355.45High-mobility group box 6 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0000741 karyogamy
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000785 chromatin
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003682 chromatin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g19480.1Cp4.1LG01g19480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainGENE3DG3DSA:1.10.30.10coord: 102..126
score: 7.
IPR009071High mobility group box domainunknownSSF47095HMG-boxcoord: 99..149
score: 5.11
NoneNo IPR availableunknownCoilCoilcoord: 136..160
scor
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 72..175
score: 2.5E-23coord: 32..49
score: 2.5
NoneNo IPR availablePANTHERPTHR13711:SF147SUBFAMILY NOT NAMEDcoord: 72..175
score: 2.5E-23coord: 32..49
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g19480CmaCh04G022330Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g19480CmaCh15G008010Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g19480CmoCh15G008280Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g19480CmoCh04G023340Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g19480Cla009071Watermelon (97103) v1cpewmB441
Cp4.1LG01g19480CsaUNG006760Cucumber (Chinese Long) v2cpecuB383
Cp4.1LG01g19480ClCG01G007990Watermelon (Charleston Gray)cpewcgB370
Cp4.1LG01g19480CSPIUnG00100Wild cucumber (PI 183967)cpecpiB473
Cp4.1LG01g19480Lsi09G008460Bottle gourd (USVL1VR-Ls)cpelsiB311
Cp4.1LG01g19480CsaV3_5G021890Cucumber (Chinese Long) v3cpecucB0549
Cp4.1LG01g19480Bhi12G000996Wax gourdcpewgoB0490
Cp4.1LG01g19480CsGy5G013820Cucumber (Gy14) v2cgybcpeB653
Cp4.1LG01g19480Carg01403Silver-seed gourdcarcpeB1158
Cp4.1LG01g19480Carg17766Silver-seed gourdcarcpeB0670
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g19480Cp4.1LG13g05740Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g19480Wax gourdcpewgoB0491
Cp4.1LG01g19480Melon (DHL92) v3.5.1cpemeB359
Cp4.1LG01g19480Melon (DHL92) v3.6.1cpemedB419