Lsi09G003950 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G003950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 4162472 .. 4163215 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATCAACTCCGGAGGTTTCAATGGAGGTCCAGCAACAAAAGATTTTTGCGCTTCTTCATTTTGTGATGGAGTGTAATAGGAATCATAGATTAACTTCTAGGGTGTTGGAACCAGAGAATTACTCTGTTTCGATGATGAAGGATGCAGTACTTGATTCTGCAGTGATAGTTAACTCACTTACTGTTTTAAGTCCTTCTGAGGATGAGAATGAGATTGCCAATGTTCCAAAGGAACATGTTGAGGATAACTTGCCTAAGTTTCATCCACCTCGGAAGGGTCTTTCAGCGATTAGAAGCTTTCCTCCTGGATGTGGAAGAGGTGCTCCTCCGGTTAGAATTCAACATGGCTCAAAATGCTTGCAGAAGGATGGTTTAAGAGCTAAAAAACGAGCTTGGTCTGATGAAGCATTAACCAAAGTTGCAAAGAAATCAAGTGCTGAGAGTTTCTCTGGAGCTAGTTCAATCACCCGCAGAATAGAATCTGAAGACCATAACATTTTGGAGGATCCACTGAGGAAGACATCTAGGAATGAGGATGAAAGTATAGGGGAAAAGTTATCGAGAGGATTTGATAATGTGAAATCCGAGCAAGGAGAACTTGCAACTTGCCCTGAACCTTTGGCAAAAAGGGTTGTGGTGCAGGGTTTGACGGCAGCACCAAATTGCCCATGGAGGCAAGGCAAGAGGATGTTTAAATCAATACCAACCAACATAAATCTTAAAGGCGAAAGGCCTTAA

mRNA sequence

ATGGAGTCATCAACTCCGGAGGTTTCAATGGAGGTCCAGCAACAAAAGATTTTTGCGCTTCTTCATTTTGTGATGGAGTGTAATAGGAATCATAGATTAACTTCTAGGGTGTTGGAACCAGAGAATTACTCTGTTTCGATGATGAAGGATGCAGTACTTGATTCTGCAGTGATAGTTAACTCACTTACTGTTTTAAGTCCTTCTGAGGATGAGAATGAGATTGCCAATGTTCCAAAGGAACATGTTGAGGATAACTTGCCTAAGTTTCATCCACCTCGGAAGGGTCTTTCAGCGATTAGAAGCTTTCCTCCTGGATGTGGAAGAGGTGCTCCTCCGGTTAGAATTCAACATGGCTCAAAATGCTTGCAGAAGGATGGTTTAAGAGCTAAAAAACGAGCTTGGTCTGATGAAGCATTAACCAAAGTTGCAAAGAAATCAAGTGCTGAGAGTTTCTCTGGAGCTAGTTCAATCACCCGCAGAATAGAATCTGAAGACCATAACATTTTGGAGGATCCACTGAGGAAGACATCTAGGAATGAGGATGAAAGTATAGGGGAAAAGTTATCGAGAGGATTTGATAATGTGAAATCCGAGCAAGGAGAACTTGCAACTTGCCCTGAACCTTTGGCAAAAAGGGTTGTGGTGCAGGGTTTGACGGCAGCACCAAATTGCCCATGGAGGCAAGGCAAGAGGATGTTTAAATCAATACCAACCAACATAAATCTTAAAGGCGAAAGGCCTTAA

Coding sequence (CDS)

ATGGAGTCATCAACTCCGGAGGTTTCAATGGAGGTCCAGCAACAAAAGATTTTTGCGCTTCTTCATTTTGTGATGGAGTGTAATAGGAATCATAGATTAACTTCTAGGGTGTTGGAACCAGAGAATTACTCTGTTTCGATGATGAAGGATGCAGTACTTGATTCTGCAGTGATAGTTAACTCACTTACTGTTTTAAGTCCTTCTGAGGATGAGAATGAGATTGCCAATGTTCCAAAGGAACATGTTGAGGATAACTTGCCTAAGTTTCATCCACCTCGGAAGGGTCTTTCAGCGATTAGAAGCTTTCCTCCTGGATGTGGAAGAGGTGCTCCTCCGGTTAGAATTCAACATGGCTCAAAATGCTTGCAGAAGGATGGTTTAAGAGCTAAAAAACGAGCTTGGTCTGATGAAGCATTAACCAAAGTTGCAAAGAAATCAAGTGCTGAGAGTTTCTCTGGAGCTAGTTCAATCACCCGCAGAATAGAATCTGAAGACCATAACATTTTGGAGGATCCACTGAGGAAGACATCTAGGAATGAGGATGAAAGTATAGGGGAAAAGTTATCGAGAGGATTTGATAATGTGAAATCCGAGCAAGGAGAACTTGCAACTTGCCCTGAACCTTTGGCAAAAAGGGTTGTGGTGCAGGGTTTGACGGCAGCACCAAATTGCCCATGGAGGCAAGGCAAGAGGATGTTTAAATCAATACCAACCAACATAAATCTTAAAGGCGAAAGGCCTTAA

Protein sequence

MESSTPEVSMEVQQQKIFALLHFVMECNRNHRLTSRVLEPENYSVSMMKDAVLDSAVIVNSLTVLSPSEDENEIANVPKEHVEDNLPKFHPPRKGLSAIRSFPPGCGRGAPPVRIQHGSKCLQKDGLRAKKRAWSDEALTKVAKKSSAESFSGASSITRRIESEDHNILEDPLRKTSRNEDESIGEKLSRGFDNVKSEQGELATCPEPLAKRVVVQGLTAAPNCPWRQGKRMFKSIPTNINLKGERP
BLAST of Lsi09G003950 vs. NCBI nr
Match: gi|659073562|ref|XP_008437128.1| (PREDICTED: uncharacterized protein LOC103482642 [Cucumis melo])

HSP 1 Score: 372.5 bits (955), Expect = 5.8e-100
Identity = 191/236 (80.93%), Postives = 210/236 (88.98%), Query Frame = 1

Query: 1   MESSTPEVSMEVQQQKIFALLHFVMECNRNHRLTSRVLEPENYSVSMMKDAVLDSAVIVN 60
           MESSTP VSMEVQQQKIFALLH +M CNRN RLTSRVLEPENY  SMMKDAVLDSA++V+
Sbjct: 1   MESSTPGVSMEVQQQKIFALLHCLMGCNRNLRLTSRVLEPENYPFSMMKDAVLDSAMVVD 60

Query: 61  SLTVLSPSEDENEIANVPKEHVEDNLPKFHPPRKGLSAIRSFPPGCGRGAPPVRIQHGSK 120
            LTVLSPSEDENEI NVPKEHV DNLPKFHPPRKGLSAIRSFPPGCGRGAPP+ I++ SK
Sbjct: 61  PLTVLSPSEDENEIVNVPKEHVGDNLPKFHPPRKGLSAIRSFPPGCGRGAPPLTIRNSSK 120

Query: 121 CLQKDGLRAKKRAWSDEALTKVAKKSSAESFSGASSITRRIESEDHNILEDPLRKTSRNE 180
            LQ DG RAKKR W+D  LTKVAKKSSA+S SGA SITRRI  EDHNI EDPLR+TSR+E
Sbjct: 121 GLQMDGSRAKKRVWNDVPLTKVAKKSSAQSLSGACSITRRIGPEDHNISEDPLRQTSRSE 180

Query: 181 DESIGEKLSRGFDNVKSEQGELATCPEPLAKRVVVQGLTAAPNCPWRQGKRMFKSI 237
           D SIGE++SRGFDNVKS+QG+LA CPE +AKRVVVQGLTA+ NCPWRQGK+MFKS+
Sbjct: 181 DGSIGEEISRGFDNVKSKQGKLAGCPESIAKRVVVQGLTASSNCPWRQGKKMFKSV 236

BLAST of Lsi09G003950 vs. NCBI nr
Match: gi|720093564|ref|XP_010246093.1| (PREDICTED: uncharacterized protein LOC104589448 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 71/252 (28.17%), Postives = 102/252 (40.48%), Query Frame = 1

Query: 44  SVSMMKDAVLDSAVIVNSLTV----LSPSEDENEIANVPKEHVEDNLPKFHPPRKGLSAI 103
           ++ M   ++L+     NS+      LS   D+ + +++  ++    L K +P R  +SA 
Sbjct: 242 NLDMQATSILELQSAKNSVLAVTLELSKISDQPQPSSLVVDNTNARLSKKYPSRSKISAN 301

Query: 104 RSFPPGCGRGAP-----------------------PVRIQHGSKCLQKDGLRAKKRAWSD 163
           R FP GCGR AP                       P   Q G +   +D    K +    
Sbjct: 302 RDFPQGCGRNAPSASKEEQLRAISSSGGKYLADAMPSGKQIGQEVQGRDVFNDKSKGGVT 361

Query: 164 EALTKVAK------KSSAESFS---------GASSITRRIESED----------HNILED 223
             + K AK      K  AE F           A   T RI   D          H  L++
Sbjct: 362 NEIEKKAKSKGDVTKEMAEHFQVKITCEVKDDAEQNTDRIHDGDAQNKKPKGNVHKELKE 421

Query: 224 PLRKTSRNEDESIGEKLSRGFDNVKSEQGELATCPEP----LAKRVVVQGLTAAPNCPWR 240
            ++  + +E  S  E       N+KS + E+ T   P       RV+VQ L AAPNCPWR
Sbjct: 422 QVQIRADSESNSKWEDTEE--TNMKSPR-EITTEDSPGFGHHDNRVIVQALMAAPNCPWR 481

BLAST of Lsi09G003950 vs. NCBI nr
Match: gi|720093547|ref|XP_010246087.1| (PREDICTED: uncharacterized protein LOC104589448 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 71/252 (28.17%), Postives = 102/252 (40.48%), Query Frame = 1

Query: 44  SVSMMKDAVLDSAVIVNSLTV----LSPSEDENEIANVPKEHVEDNLPKFHPPRKGLSAI 103
           ++ M   ++L+     NS+      LS   D+ + +++  ++    L K +P R  +SA 
Sbjct: 258 NLDMQATSILELQSAKNSVLAVTLELSKISDQPQPSSLVVDNTNARLSKKYPSRSKISAN 317

Query: 104 RSFPPGCGRGAP-----------------------PVRIQHGSKCLQKDGLRAKKRAWSD 163
           R FP GCGR AP                       P   Q G +   +D    K +    
Sbjct: 318 RDFPQGCGRNAPSASKEEQLRAISSSGGKYLADAMPSGKQIGQEVQGRDVFNDKSKGGVT 377

Query: 164 EALTKVAK------KSSAESFS---------GASSITRRIESED----------HNILED 223
             + K AK      K  AE F           A   T RI   D          H  L++
Sbjct: 378 NEIEKKAKSKGDVTKEMAEHFQVKITCEVKDDAEQNTDRIHDGDAQNKKPKGNVHKELKE 437

Query: 224 PLRKTSRNEDESIGEKLSRGFDNVKSEQGELATCPEP----LAKRVVVQGLTAAPNCPWR 240
            ++  + +E  S  E       N+KS + E+ T   P       RV+VQ L AAPNCPWR
Sbjct: 438 QVQIRADSESNSKWEDTEE--TNMKSPR-EITTEDSPGFGHHDNRVIVQALMAAPNCPWR 497

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659073562|ref|XP_008437128.1|5.8e-10080.93PREDICTED: uncharacterized protein LOC103482642 [Cucumis melo][more]
gi|720093564|ref|XP_010246093.1|2.9e-0628.17PREDICTED: uncharacterized protein LOC104589448 isoform X2 [Nelumbo nucifera][more]
gi|720093547|ref|XP_010246087.1|2.9e-0628.17PREDICTED: uncharacterized protein LOC104589448 isoform X1 [Nelumbo nucifera][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G003950.1Lsi09G003950.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G003950CmaCh15G011510Cucurbita maxima (Rimu)cmalsiB267
Lsi09G003950Cla011556Watermelon (97103) v1lsiwmB027
Lsi09G003950ClCG01G003800Watermelon (Charleston Gray)lsiwcgB008
Lsi09G003950CsGy5G003860Cucumber (Gy14) v2cgyblsiB294
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G003950Melon (DHL92) v3.6.1lsimedB012
Lsi09G003950Melon (DHL92) v3.6.1lsimedB036
Lsi09G003950Melon (DHL92) v3.6.1lsimedB037
Lsi09G003950Silver-seed gourdcarlsiB160
Lsi09G003950Silver-seed gourdcarlsiB837
Lsi09G003950Cucumber (Chinese Long) v3cuclsiB171
Lsi09G003950Cucumber (Chinese Long) v3cuclsiB172
Lsi09G003950Cucumber (Chinese Long) v3cuclsiB345
Lsi09G003950Watermelon (97103) v2lsiwmbB007
Lsi09G003950Watermelon (97103) v2lsiwmbB010
Lsi09G003950Wax gourdlsiwgoB010
Lsi09G003950Wax gourdlsiwgoB040
Lsi09G003950Bottle gourd (USVL1VR-Ls)lsilsiB008
Lsi09G003950Bottle gourd (USVL1VR-Ls)lsilsiB019
Lsi09G003950Cucumber (Gy14) v1cgylsiB411
Lsi09G003950Cucumber (Gy14) v1cgylsiB487
Lsi09G003950Cucumber (Gy14) v1cgylsiB526
Lsi09G003950Cucurbita maxima (Rimu)cmalsiB299
Lsi09G003950Cucurbita maxima (Rimu)cmalsiB530
Lsi09G003950Cucurbita maxima (Rimu)cmalsiB742
Lsi09G003950Cucurbita moschata (Rifu)cmolsiB255
Lsi09G003950Cucurbita moschata (Rifu)cmolsiB287
Lsi09G003950Cucurbita moschata (Rifu)cmolsiB516
Lsi09G003950Cucurbita moschata (Rifu)cmolsiB734
Lsi09G003950Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G003950Cucurbita pepo (Zucchini)cpelsiB698
Lsi09G003950Wild cucumber (PI 183967)cpilsiB154
Lsi09G003950Wild cucumber (PI 183967)cpilsiB155
Lsi09G003950Wild cucumber (PI 183967)cpilsiB322
Lsi09G003950Cucumber (Chinese Long) v2culsiB155
Lsi09G003950Cucumber (Chinese Long) v2culsiB156
Lsi09G003950Cucumber (Chinese Long) v2culsiB322
Lsi09G003950Melon (DHL92) v3.5.1lsimeB012
Lsi09G003950Melon (DHL92) v3.5.1lsimeB030
Lsi09G003950Melon (DHL92) v3.5.1lsimeB036
Lsi09G003950Watermelon (Charleston Gray)lsiwcgB007
Lsi09G003950Watermelon (Charleston Gray)lsiwcgB023
Lsi09G003950Watermelon (97103) v1lsiwmB008
Lsi09G003950Watermelon (97103) v1lsiwmB024
Lsi09G003950Cucumber (Gy14) v2cgyblsiB141
Lsi09G003950Cucumber (Gy14) v2cgyblsiB142