ClCG01G003800 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G003800
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 4035224 .. 4035976 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATCAACTCCGGAGGTTTCAATGGAAGTCCAGCGGCAAAAGATTTTTGCTCTTCTTCATTTTCTGATGGAGTGTAATAGGAATCATAGATTAACTTCTAGGGTGTTGGAACCAGAGAACTACTTTGTTTCAATGATGAAGGATGCAGTACTTGATTCTGCAGCCATAGTTGACTCACTTACTGTTTTAAGTCCTTCTGAAGATGAGAATGAGATTGCCAATGTTCCAAAGGAACATGTTGAGGATAACTTGCCTAAGTTTCATCCACCTCGGAAGGGTTTTTCAGCGATTAGAAGCTTTCCTCCTGGGTGTGGAAGAGGCGCTCCTCCGGTTAGAATTCGACATGGCTCAAAATGCTTGCAGAAGGATGGTTTAAAAGCTAAAAAACGAGCTTGGTATGATGAAGCATTAACAAACGTTGCAAAGAAATCAAGTGCTGAGAGTTTCTCTGGAGCTAATTCAATCACCCGCAGAATAGAGTCTGAAGACCATAACATTTTGGAGGATCCACTGAGGAAGACATCTAGGAATGAAGATGGAAGTATGGGGGAAAAGTTATCGAGAGGATTTGATAATGTAAAATCCGAGCAAGGAGAACTTGCAACTTGCCCTGAACCTTTGGCAAAAAGGGTTGTGGTGCAGGGTTTGATGGCAGCACCAAATTGCCCGTGGAGGCAAGGCAAGAGGATGTTTAAATCATTGCCAACCTACATAAATCTTGAAGGAAAAGGGCTTAGAGACCGATGA

mRNA sequence

ATGGAGTCATCAACTCCGGAGGTTTCAATGGAAGTCCAGCGGCAAAAGATTTTTGCTCTTCTTCATTTTCTGATGGAGTGTAATAGGAATCATAGATTAACTTCTAGGGTGTTGGAACCAGAGAACTACTTTGTTTCAATGATGAAGGATGCAGTACTTGATTCTGCAGCCATAGTTGACTCACTTACTGTTTTAAGTCCTTCTGAAGATGAGAATGAGATTGCCAATGTTCCAAAGGAACATGTTGAGGATAACTTGCCTAAGTTTCATCCACCTCGGAAGGGTTTTTCAGCGATTAGAAGCTTTCCTCCTGGGTGTGGAAGAGGCGCTCCTCCGGTTAGAATTCGACATGGCTCAAAATGCTTGCAGAAGGATGGTTTAAAAGCTAAAAAACGAGCTTGGTATGATGAAGCATTAACAAACGTTGCAAAGAAATCAAGTGCTGAGAGTTTCTCTGGAGCTAATTCAATCACCCGCAGAATAGAGTCTGAAGACCATAACATTTTGGAGGATCCACTGAGGAAGACATCTAGGAATGAAGATGGAAGTATGGGGGAAAAGTTATCGAGAGGATTTGATAATGTAAAATCCGAGCAAGGAGAACTTGCAACTTGCCCTGAACCTTTGGCAAAAAGGGTTGTGGTGCAGGGTTTGATGGCAGCACCAAATTGCCCGTGGAGGCAAGGCAAGAGGATGTTTAAATCATTGCCAACCTACATAAATCTTGAAGGAAAAGGGCTTAGAGACCGATGA

Coding sequence (CDS)

ATGGAGTCATCAACTCCGGAGGTTTCAATGGAAGTCCAGCGGCAAAAGATTTTTGCTCTTCTTCATTTTCTGATGGAGTGTAATAGGAATCATAGATTAACTTCTAGGGTGTTGGAACCAGAGAACTACTTTGTTTCAATGATGAAGGATGCAGTACTTGATTCTGCAGCCATAGTTGACTCACTTACTGTTTTAAGTCCTTCTGAAGATGAGAATGAGATTGCCAATGTTCCAAAGGAACATGTTGAGGATAACTTGCCTAAGTTTCATCCACCTCGGAAGGGTTTTTCAGCGATTAGAAGCTTTCCTCCTGGGTGTGGAAGAGGCGCTCCTCCGGTTAGAATTCGACATGGCTCAAAATGCTTGCAGAAGGATGGTTTAAAAGCTAAAAAACGAGCTTGGTATGATGAAGCATTAACAAACGTTGCAAAGAAATCAAGTGCTGAGAGTTTCTCTGGAGCTAATTCAATCACCCGCAGAATAGAGTCTGAAGACCATAACATTTTGGAGGATCCACTGAGGAAGACATCTAGGAATGAAGATGGAAGTATGGGGGAAAAGTTATCGAGAGGATTTGATAATGTAAAATCCGAGCAAGGAGAACTTGCAACTTGCCCTGAACCTTTGGCAAAAAGGGTTGTGGTGCAGGGTTTGATGGCAGCACCAAATTGCCCGTGGAGGCAAGGCAAGAGGATGTTTAAATCATTGCCAACCTACATAAATCTTGAAGGAAAAGGGCTTAGAGACCGATGA

Protein sequence

MESSTPEVSMEVQRQKIFALLHFLMECNRNHRLTSRVLEPENYFVSMMKDAVLDSAAIVDSLTVLSPSEDENEIANVPKEHVEDNLPKFHPPRKGFSAIRSFPPGCGRGAPPVRIRHGSKCLQKDGLKAKKRAWYDEALTNVAKKSSAESFSGANSITRRIESEDHNILEDPLRKTSRNEDGSMGEKLSRGFDNVKSEQGELATCPEPLAKRVVVQGLMAAPNCPWRQGKRMFKSLPTYINLEGKGLRDR
Homology
[Close]
BLAST of ClCG01G003800 vs. NCBI nr
Match: gi|659073562|ref|XP_008437128.1| (PREDICTED: uncharacterized protein LOC103482642 [Cucumis melo])

HSP 1 Score: 379.0 bits (972), Expect = 6.3e-102
Identity = 193/245 (78.78%), Postives = 210/245 (85.71%), Query Frame = 1 

Query: 1   MESSTPEVSMEVQRQKIFALLHFLMECNRNHRLTSRVLEPENYFVSMMKDAVLDSAAIVD 60
           MESSTP VSMEVQ+QKIFALLH LM CNRN RLTSRVLEPENY  SMMKDAVLDSA +VD
Sbjct: 1   MESSTPGVSMEVQQQKIFALLHCLMGCNRNLRLTSRVLEPENYPFSMMKDAVLDSAMVVD 60

Query: 61  SLTVLSPSEDENEIANVPKEHVEDNLPKFHPPRKGFSAIRSFPPGCGRGAPPVRIRHGSK 120
            LTVLSPSEDENEI NVPKEHV DNLPKFHPPRKG SAIRSFPPGCGRGAPP+ IR+ SK
Sbjct: 61  PLTVLSPSEDENEIVNVPKEHVGDNLPKFHPPRKGLSAIRSFPPGCGRGAPPLTIRNSSK 120

Query: 121 CLQKDGLKAKKRAWYDEALTNVAKKSSAESFSGANSITRRIESEDHNILEDPLRKTSRNE 180
            LQ DG +AKKR W D  LT VAKKSSA+S SGA SITRRI  EDHNI EDPLR+TSR+E
Sbjct: 121 GLQMDGSRAKKRVWNDVPLTKVAKKSSAQSLSGACSITRRIGPEDHNISEDPLRQTSRSE 180

Query: 181 DGSMGEKLSRGFDNVKSEQGELATCPEPLAKRVVVQGLMAAPNCPWRQGKRMFKSLPTYI 240
           DGS+GE++SRGFDNVKS+QG+LA CPE +AKRVVVQGL A+ NCPWRQGK+MFKS    +
Sbjct: 181 DGSIGEEISRGFDNVKSKQGKLAGCPESIAKRVVVQGLTASSNCPWRQGKKMFKS----V 240

Query: 241 NLEGK 246
           NL GK
Sbjct: 241 NLGGK 241

The following BLAST results are available for this feature:
BLAST of ClCG01G003800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073562|ref|XP_008437128.1|6.3e-10278.78PREDICTED: uncharacterized protein LOC103482642 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G003800.1ClCG01G003800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G003800Cla011556Watermelon (97103) v1wcgwmB142
ClCG01G003800Lsi09G003950Bottle gourd (USVL1VR-Ls)lsiwcgB008
ClCG01G003800CsGy5G003860Cucumber (Gy14) v2cgybwcgB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G003800Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G003800Cucurbita pepo (Zucchini)cpewcgB200
ClCG01G003800Cucurbita pepo (Zucchini)cpewcgB780
ClCG01G003800Bottle gourd (USVL1VR-Ls)lsiwcgB322
ClCG01G003800Bottle gourd (USVL1VR-Ls)lsiwcgB394
ClCG01G003800Cucumber (Gy14) v2cgybwcgB192
ClCG01G003800Cucumber (Gy14) v2cgybwcgB191
ClCG01G003800Melon (DHL92) v3.6.1medwcgB016
ClCG01G003800Melon (DHL92) v3.6.1medwcgB408
ClCG01G003800Melon (DHL92) v3.6.1medwcgB409
ClCG01G003800Silver-seed gourdcarwcgB0172
ClCG01G003800Silver-seed gourdcarwcgB0843
ClCG01G003800Silver-seed gourdcarwcgB0899
ClCG01G003800Cucumber (Chinese Long) v3cucwcgB211
ClCG01G003800Cucumber (Chinese Long) v3cucwcgB212
ClCG01G003800Cucumber (Chinese Long) v3cucwcgB385
ClCG01G003800Watermelon (97103) v2wcgwmbB089
ClCG01G003800Watermelon (97103) v2wcgwmbB094
ClCG01G003800Watermelon (97103) v2wcgwmbB109
ClCG01G003800Wax gourdwcgwgoB193
ClCG01G003800Wax gourdwcgwgoB206
ClCG01G003800Watermelon (Charleston Gray)wcgwcgB041
ClCG01G003800Watermelon (Charleston Gray)wcgwcgB101
ClCG01G003800Cucurbita moschata (Rifu)cmowcgB247
ClCG01G003800Cucumber (Gy14) v1cgywcgB445
ClCG01G003800Cucumber (Gy14) v1cgywcgB520
ClCG01G003800Cucumber (Gy14) v1cgywcgB557
ClCG01G003800Cucurbita maxima (Rimu)cmawcgB259
ClCG01G003800Cucurbita maxima (Rimu)cmawcgB518
ClCG01G003800Cucurbita maxima (Rimu)cmawcgB733
ClCG01G003800Cucurbita moschata (Rifu)cmowcgB283
ClCG01G003800Cucurbita moschata (Rifu)cmowcgB516
ClCG01G003800Cucurbita moschata (Rifu)cmowcgB737
ClCG01G003800Wild cucumber (PI 183967)cpiwcgB210
ClCG01G003800Wild cucumber (PI 183967)cpiwcgB211
ClCG01G003800Wild cucumber (PI 183967)cpiwcgB379
ClCG01G003800Cucumber (Chinese Long) v2cuwcgB207
ClCG01G003800Cucumber (Chinese Long) v2cuwcgB208
ClCG01G003800Cucumber (Chinese Long) v2cuwcgB364
ClCG01G003800Melon (DHL92) v3.5.1mewcgB018
ClCG01G003800Melon (DHL92) v3.5.1mewcgB418
ClCG01G003800Melon (DHL92) v3.5.1mewcgB422
ClCG01G003800Watermelon (97103) v1wcgwmB137
ClCG01G003800Watermelon (97103) v1wcgwmB119