Lsi09G001800 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G001800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 1895729 .. 1896130 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAACCTCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTCCGATGTATAA

mRNA sequence

ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAACCTCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTCCGATGTATAA

Coding sequence (CDS)

ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAACCTCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTCCGATGTATAA

Protein sequence

MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKKVSLIFLLRFSYFDFSDV
Homology
[Close]
BLAST of Lsi09G001800 vs. NCBI nr
Match: gi|659074028|ref|XP_008437383.1| (PREDICTED: uncharacterized protein LOC103482815 isoform X1 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 3.1e-39
Identity = 89/118 (75.42%), Postives = 94/118 (79.66%), Query Frame = 1 

Query: 1   MASLQCNKPADHGHSQHQQKHDQQHNH-CFGGHVSDKITGVF-KGHHHGQAPLASASAPV 60
           MA  QC KPADH H QHQQKHDQQH+H CFGGHVSDKI GVF KGHHH QA  AS +  V
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGA--V 60

Query: 61  HHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKK 117
           HHSAN  +CK +GSKKKKEH   KEGG   KIK+ FSDHSSDSSDSENECHKPHHNKK
Sbjct: 61  HHSANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKK 116

[Close]
BLAST of Lsi09G001800 vs. NCBI nr
Match: gi|659074030|ref|XP_008437384.1| (PREDICTED: uncharacterized protein LOC103482815 isoform X2 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 3.0e-34
Identity = 82/111 (73.87%), Postives = 87/111 (78.38%), Query Frame = 1 

Query: 1   MASLQCNKPADHGHSQHQQKHDQQHNH-CFGGHVSDKITGVF-KGHHHGQAPLASASAPV 60
           MA  QC KPADH H QHQQKHDQQH+H CFGGHVSDKI GVF KGHHH QA  AS +  V
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGA--V 60

Query: 61  HHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECH 110
           HHSAN  +CK +GSKKKKEH   KEGG   KIK+ FSDHSSDSSDSENECH
Sbjct: 61  HHSANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECH 109

The following BLAST results are available for this feature:
BLAST of Lsi09G001800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G001800 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi09G001800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G001800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074028|ref|XP_008437383.1|3.1e-3975.42PREDICTED: uncharacterized protein LOC103482815 isoform X1 [Cucumis melo][more]
gi|659074030|ref|XP_008437384.1|3.0e-3473.87PREDICTED: uncharacterized protein LOC103482815 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G001800.1Lsi09G001800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G001800Cla011378Watermelon (97103) v1lsiwmB027
Lsi09G001800MELO3C005744Melon (DHL92) v3.5.1lsimeB012
Lsi09G001800ClCG01G001960Watermelon (Charleston Gray)lsiwcgB008
Lsi09G001800MELO3C005744.2Melon (DHL92) v3.6.1lsimedB012
Lsi09G001800Cla97C01G002020Watermelon (97103) v2lsiwmbB007
Lsi09G001800Bhi12G000139Wax gourdlsiwgoB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G001800Cucurbita moschata (Rifu)cmolsiB255
Lsi09G001800Cucurbita moschata (Rifu)cmolsiB288
Lsi09G001800Cucurbita moschata (Rifu)cmolsiB516
Lsi09G001800Cucurbita moschata (Rifu)cmolsiB611
Lsi09G001800Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G001800Wild cucumber (PI 183967)cpilsiB244
Lsi09G001800Wild cucumber (PI 183967)cpilsiB322
Lsi09G001800Cucumber (Chinese Long) v2culsiB245
Lsi09G001800Cucumber (Chinese Long) v2culsiB322
Lsi09G001800Melon (DHL92) v3.5.1lsimeB038
Lsi09G001800Watermelon (Charleston Gray)lsiwcgB033
Lsi09G001800Watermelon (97103) v1lsiwmB014
Lsi09G001800Cucumber (Gy14) v2cgyblsiB231
Lsi09G001800Cucumber (Gy14) v2cgyblsiB294
Lsi09G001800Melon (DHL92) v3.6.1lsimedB041
Lsi09G001800Silver-seed gourdcarlsiB038
Lsi09G001800Silver-seed gourdcarlsiB327
Lsi09G001800Silver-seed gourdcarlsiB534
Lsi09G001800Cucumber (Chinese Long) v3cuclsiB267
Lsi09G001800Cucumber (Chinese Long) v3cuclsiB345
Lsi09G001800Watermelon (97103) v2lsiwmbB030
Lsi09G001800Wax gourdlsiwgoB047
Lsi09G001800Bottle gourd (USVL1VR-Ls)lsilsiB020
Lsi09G001800Cucumber (Gy14) v1cgylsiB138
Lsi09G001800Cucumber (Gy14) v1cgylsiB487
Lsi09G001800Cucurbita maxima (Rimu)cmalsiB267
Lsi09G001800Cucurbita maxima (Rimu)cmalsiB300
Lsi09G001800Cucurbita maxima (Rimu)cmalsiB530
Lsi09G001800Cucurbita maxima (Rimu)cmalsiB624