ClCG01G001960 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G001960
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 1938837 .. 1939961 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGGCAGCTCCTTCCAAACATCATTTAAAACTCTCAACGAAAAGCTTCAATTTTTACTGCATCAATGGCATCCCTACAATGCAACAAACCAGCTGATCATGAGTACAGCCAGCACCAGCAGAAGAATGACCAACAACATCACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCAAAGGTGTCTTCAAAGGCCACCATCACGGCCAGGCTCCACCAGCAGTGGCGCCGGTGCACCACTCTGCCAATGCTAACCACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGAGGTTTGTTTCATAAGATCAAGGATGCCTTTTCTGACCACAGCAGTGACAGCAGCAGTGACAGTGATAATGAAGGTCACAAAGCCAATCACAACAAGAAGGTAAGCTTCGATTCTTTTATTTTGACTTCTCATATATATTTATATATATATTTCATATCCGGTTTTACTATCATTGTGAAATAGAATTCACCAAGTGTTTGATTGTTTACCTACGAAAACATGAGTTGTTGGGTTTAGTTTTAGCATGTTGACAACAATATTCAGGATGGTAATAATCATTGATTTGCACTATAGATCATGGATCTGGTTAGAACGTAATGTCCAGCTTTCACGAGTTATGCTATGGTGTTTGTATTTACTCTCGTAGTGTGAGTGAGTGAAGAATGAATGTAACCATTAGCCGGGTGCAACATTAAAATAGTTTCCAATGATCATCTAACTCAACATATATGCCTAGTTCAAGCATGCTCAGCTGCAATGTTTTGATAGGATCTATTACATTAGAGTTGATATCTTTTCGCAAAATTTTTATGTTGATTTGATTTGTATTTTCTCTTAGTAATTCTTTTGCTTGGATTTGCAGTACTGAAAGGAGAGAAGAAAGGTGAATGGATTGAAGGACCGGTGAATGCCTCTAAACTACCTCTACTATTCAGAATTTGAGTGAAGTAAAAATAAAGATACACGATGTAAAAATAAAGATGATTATTTATGCGACTTCTACTGTACCATCCTATTTTTCCATATTTGAAATAAAACTTCTCTATATAATGTAATTCAACGGAATCATTTCAAATACAATTCAGCTTTTCAA

mRNA sequence

GCAGGCAGCTCCTTCCAAACATCATTTAAAACTCTCAACGAAAAGCTTCAATTTTTACTGCATCAATGGCATCCCTACAATGCAACAAACCAGCTGATCATGAGTACAGCCAGCACCAGCAGAAGAATGACCAACAACATCACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCAAAGGTGTCTTCAAAGGCCACCATCACGGCCAGGCTCCACCAGCAGTGGCGCCGGTGCACCACTCTGCCAATGCTAACCACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGAGGTTTGTTTCATAAGATCAAGGATGCCTTTTCTGACCACAGCAGTGACAGCAGCAGTGACAGTGATAATGAAGGTCACAAAGCCAATCACAACAAGAAGAACGTAATGTCCAGCTTTCACGAGTTATGCTATGGTGTTTGTATTTACTCTCGTAGTGTGATACTGAAAGGAGAGAAGAAAGGTGAATGGATTGAAGGACCGGTGAATGCCTCTAAACTACCTCTACTATTCAGAATTTGAGTGAAGTAAAAATAAAGATACACGATGTAAAAATAAAGATGATTATTTATGCGACTTCTACTGTACCATCCTATTTTTCCATATTTGAAATAAAACTTCTCTATATAATGTAATTCAACGGAATCATTTCAAATACAATTCAGCTTTTCAA

Coding sequence (CDS)

ATGGCATCCCTACAATGCAACAAACCAGCTGATCATGAGTACAGCCAGCACCAGCAGAAGAATGACCAACAACATCACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCAAAGGTGTCTTCAAAGGCCACCATCACGGCCAGGCTCCACCAGCAGTGGCGCCGGTGCACCACTCTGCCAATGCTAACCACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGAGGTTTGTTTCATAAGATCAAGGATGCCTTTTCTGACCACAGCAGTGACAGCAGCAGTGACAGTGATAATGAAGGTCACAAAGCCAATCACAACAAGAAGAACGTAATGTCCAGCTTTCACGAGTTATGCTATGGTGTTTGTATTTACTCTCGTAGTGTGATACTGAAAGGAGAGAAGAAAGGTGAATGGATTGAAGGACCGGTGAATGCCTCTAAACTACCTCTACTATTCAGAATTTGA

Protein sequence

MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFKGHHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSSSDSDNEGHKANHNKKNVMSSFHELCYGVCIYSRSVILKGEKKGEWIEGPVNASKLPLLFRI
Homology
[Close]
BLAST of ClCG01G001960 vs. NCBI nr
Match: gi|659074028|ref|XP_008437383.1| (PREDICTED: uncharacterized protein LOC103482815 isoform X1 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 4.3e-43
Identity = 89/117 (76.07%), Postives = 96/117 (82.05%), Query Frame = 1 

Query: 1   MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHH 60
           MA  QC KPADH + QHQQK+DQQH HHCFGGHVSDKIKGVF KGHHH QA PA   VHH
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  SANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSSSDSDNEGHKANHNKK 116
           SAN +HCK +GSKKKKEH   KEGGL HKIK+AFSDHSSD SSDS+NE HK +HNKK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSD-SSDSENECHKPHHNKK 116

[Close]
BLAST of ClCG01G001960 vs. NCBI nr
Match: gi|659074030|ref|XP_008437384.1| (PREDICTED: uncharacterized protein LOC103482815 isoform X2 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 9.8e-40
Identity = 84/110 (76.36%), Postives = 90/110 (81.82%), Query Frame = 1 

Query: 1   MASLQCNKPADHEYSQHQQKNDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPPAVAPVHH 60
           MA  QC KPADH + QHQQK+DQQH HHCFGGHVSDKIKGVF KGHHH QA PA   VHH
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  SANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAFSDHSSDSSSDSDNEGH 109
           SAN +HCK +GSKKKKEH   KEGGL HKIK+AFSDHSSD SSDS+NE H
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSD-SSDSENECH 109

[Close]
BLAST of ClCG01G001960 vs. NCBI nr
Match: gi|802711016|ref|XP_012084598.1| (PREDICTED: uncharacterized protein LOC105643966 [Jatropha curcas])

HSP 1 Score: 58.9 bits (141), Expect = 9.3e-06
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 1 

Query: 1   MASLQCNKPADHEYSQHQQKNDQQHHHCFGGHVSDKIKGVFK-----------------G 60
           MAS+QC KPA  E + + Q +  Q +H  G  +S+ +  VFK                  
Sbjct: 1   MASVQCYKPA--EQTCNNQCHQNQQNHTLGHKMSEMVSSVFKKDQTPHCQTQSTITKTHT 60

Query: 61  HHHGQAPPAVAPVHHSANANHCKPAGSKKKKEHHKNKEGGLFHKIKDAF---SDHSSDSS 115
           H HGQ   ++A    + N N+C     K ++ + ++K  GL  KIKD     SD  S SS
Sbjct: 61  HTHGQTAQSLA----TGNVNNCH---GKTRRNNGEHKRRGLLQKIKDGISGQSDSDSCSS 120

The following BLAST results are available for this feature:
BLAST of ClCG01G001960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074028|ref|XP_008437383.1|4.3e-4376.07PREDICTED: uncharacterized protein LOC103482815 isoform X1 [Cucumis melo][more]
gi|659074030|ref|XP_008437384.1|9.8e-4076.36PREDICTED: uncharacterized protein LOC103482815 isoform X2 [Cucumis melo][more]
gi|802711016|ref|XP_012084598.1|9.3e-0632.09PREDICTED: uncharacterized protein LOC105643966 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G001960.1ClCG01G001960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G001960MELO3C005744Melon (DHL92) v3.5.1mewcgB018
ClCG01G001960Cla011378Watermelon (97103) v1wcgwmB142
ClCG01G001960Cla97C01G002020Watermelon (97103) v2wcgwmbB089
ClCG01G001960Bhi12G000139Wax gourdwcgwgoB192
ClCG01G001960Lsi09G001800Bottle gourd (USVL1VR-Ls)lsiwcgB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G001960Cucumber (Gy14) v2cgybwcgB267
ClCG01G001960Cucumber (Gy14) v2cgybwcgB332
ClCG01G001960Melon (DHL92) v3.6.1medwcgB016
ClCG01G001960Melon (DHL92) v3.6.1medwcgB461
ClCG01G001960Silver-seed gourdcarwcgB0044
ClCG01G001960Silver-seed gourdcarwcgB0352
ClCG01G001960Silver-seed gourdcarwcgB0575
ClCG01G001960Silver-seed gourdcarwcgB0898
ClCG01G001960Cucumber (Chinese Long) v3cucwcgB299
ClCG01G001960Cucumber (Chinese Long) v3cucwcgB385
ClCG01G001960Watermelon (97103) v2wcgwmbB119
ClCG01G001960Wax gourdwcgwgoB211
ClCG01G001960Watermelon (Charleston Gray)wcgwcgB084
ClCG01G001960Watermelon (Charleston Gray)wcgwcgB105
ClCG01G001960Watermelon (Charleston Gray)wcgwcgB111
ClCG01G001960Cucurbita moschata (Rifu)cmowcgB247
ClCG01G001960Cucumber (Gy14) v1cgywcgB147
ClCG01G001960Cucumber (Gy14) v1cgywcgB520
ClCG01G001960Cucurbita maxima (Rimu)cmawcgB259
ClCG01G001960Cucurbita maxima (Rimu)cmawcgB290
ClCG01G001960Cucurbita maxima (Rimu)cmawcgB518
ClCG01G001960Cucurbita maxima (Rimu)cmawcgB635
ClCG01G001960Cucurbita moschata (Rifu)cmowcgB284
ClCG01G001960Cucurbita moschata (Rifu)cmowcgB516
ClCG01G001960Cucurbita moschata (Rifu)cmowcgB637
ClCG01G001960Wild cucumber (PI 183967)cpiwcgB299
ClCG01G001960Wild cucumber (PI 183967)cpiwcgB379
ClCG01G001960Cucumber (Chinese Long) v2cuwcgB289
ClCG01G001960Cucumber (Chinese Long) v2cuwcgB364
ClCG01G001960Cucumber (Chinese Long) v2cuwcgB434
ClCG01G001960Melon (DHL92) v3.5.1mewcgB085
ClCG01G001960Melon (DHL92) v3.5.1mewcgB467
ClCG01G001960Watermelon (97103) v1wcgwmB127
ClCG01G001960Watermelon (97103) v1wcgwmB152
ClCG01G001960Cucurbita pepo (Zucchini)cpewcgB165
ClCG01G001960Bottle gourd (USVL1VR-Ls)lsiwcgB397