Lsi09G000710 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G000710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	F-box protein
Location	chr09 : 593810 .. 598313 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGGATAAAAAAGAATAAGAGATTTTCTGACTTGGAATTATCCAGCAATCTTTCTTCTTCGATCAGCTGCTCTGCGCTTCATCTTCTTCAATTTTCCGTTTCCAATTCCATTGTTTCTGCTGCTCATATCCTTTCCCAATGTCAGATCCATTACAGAGATACCAAAATCTTGCCCTAACAGACTCTCTGGCGAAGAGTTACAGCTACCCATTAGCTTGTAAGGAGCTAAGCTTCTTAATCAGAAACGCTTTCAATAAACTTCCCAAGAATCTCCAATCCCTCATCTACCAACATATTATCACCGCCTTTCATCTCCTTCCGGAGTAAGTCTTCTCTTTGTCCCCTTCCTTCAATTTCTTTTCTTTCTGTTCATTTTTACAAGAAATTATGGATTCGTTTGATTCTTTTTTGTTATTTGGGAATCAAAAAATTAGAGAAGATTCGGGCGCTTTTGGTTATGGTTTGAAATTCAGTGATTTAGAATTGATAAGCTGAGTACCCATATAATTTGTCAGTTTCAATTCTCCATAGTTGAATCTAATTAGGAAATGTTATGAACTGTTTGAATGTTTGATTTGGCCATTTGGGAATTGTTCTATTCACTTCATCGATTAGAAAAAGGTTCTTTTAAATCCTTTGCCTGTGCCTGGTTGATTATTGTACATTACTTATTCATTTGTCACATCTGTCATTTTGCTGTCTTCTGCTCAAGCTTGTCTTATTAGCTACTTCTTCAATAGTCTTCAGTTTCTTTCGTGGAGAAGTGTGAGCATCTGTCACGTTGTCGATGGAATAGCTCCCCTTTTAAGGATTCTATTGAATAGTTGGTTGAATGTCTTAATAAACACATTTATTATCAACGTTAAATGAAGAGTACCATAGATTTGTCTATCGTAAACCAATTTTCCTCTTTAATGGCTTCAGCGGGCAAAAAGGATATGCAATGTAGTTAATTTTTCATTTCTCTAAGAACGTAGTTGTGTACTCTGTCGATTCCATCGCATGACATTGAAAGTGAGCTTAACTTCTATATTTATCTGTATTTTCTGTGAATTTCTTCAACTATCTTCTCTCTTATTTGTATACGTTCTATCAATGCTTATTAGAAAATGGGAAGTTTAATATGAAATCAATATGAAATTTTCTGATCAAGGTGTGGTTGATTTAACAAAAGAATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTGAATTAGTTGTAAGAATGGTTTTAACTTTTTTGCTCCCTTTCTTTCTGGGGTATTTGCTATTTATACATCAAATTGAACATAGTTATCATGTTTTGCAACTCAATCTGATTGCTAACTCATAAATTCCTTTAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTAATTTTCTGTCCTTAAGACTGTTGTCATGATATTTCCTTATATATCACAAAGTTTGTTACCTTAAAGCTCTGCTATTCAACTTATTTTGCTAGCATTATAAGTTCACCGGCATAGCTAATGGTAATTGTTTCCTTTTAAGATAATGGTCATTATGTACTCAATGTGAAGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTGAGAATTGAGATGGTCTCTAAGTTCTGAACAATATATATATATATGGTTTGGTTGGATTTCCCTGCCATTAAGTGATTAACTTAAATTTTAGAAAAATGCTATCCATGTAACTTGAAGTTAGAATATTATTATGGTATCAAAGGCATATTCGTATATAGCCAAGGAATTTGTTAGTGAGAGTCAATCATAAATAGAGTTGGTGGGAGAAGAGGAGGGTAGACAATTGTTTCGTGGGTTTAGGCTTAAGTGAGAATGCTCGAGTGGGAGGTTCAAATACAGTGGGAATTATTGTATTCTTTTATCTTTTTATCTTTCAGTATTATTCTACTTATTTGGGTTCTGTCACTCATTTTCTTAATCAAACAAAATTTTCATAAGATGGTTTTGAATTTCATAATAATTATTTGTACTATGGCATTTGGAATGATAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTACTTTTTTCTATCCCTTTTTCCTAAGTCCATTTTGAGGGTCTTTTTGGTCAGCTTTCGCTCTTCGACTATCTTACTCTAGTTACATGAATCTCTTTCTCTCTCTCTCTCTTTCTCTGAACACAAGTGTAGTTTTTCTATTCTCCCCACCTCACTGAAATGAAACTGCCTCTGCTCATTTGAATGGTCACTTTTTATGAAACTGACTTCTTTTCAGGCTGATGATAGTATGGCTTTTTTTGCTATTGATTCTTTTAGAGGGGAAAAACACGTCCATGTTCTTTTGAAAGTATCTATAAAGATTTTATAGCTGCTTTTAAGTTTTTCAAGAATGCTTTTTTATGTAGGGTTGTAAGTAGGTTGATTGGAGTCATCTCATTGTCCAAAACTGATTCTGAATTGGCCTATCAATTCAAGAAAAATTAAAACTAGATGCTGAAACCAGCGTTGGTTAAGTTATAAAAGTATACAGATTCTTGAATTTTGCCATTTGTTTCAAAAATACCCCTGTTTGTTCAAAAGTTGCAATATTACTGATGACCTTTCATGAGCCCTTAGAGTAGAAATCCTTAAGAATTTCATATAAAATTTGGATGCAACCTGGAATGATGTAGTAGTGATGGCCTAGAATGAAATTGGATCATCATATTATTCCAAGTCCTAATTTTTGTTCGAAATTTTGAAAGATTGCTACAGGGTGGCTTTGAAACTTTTGAAAGAACAAGAGTGTTCTTTAAACAAAAGGTTCAGGGTATACTTTATAATTTATCCCCCAGTGTTTTGAAAAACAGAATGGACAATCTGACCAAAATCCACAAAAGAAGCAACCAAATGATAAAAAAAACAAAACTGACTGAAATATTTTTGGCTTTTGCTTTTGAACTAATCATGATGTGTATACTTTTTGTAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTAGGCGCCCGAACTGACACTACAGGTGGAGATCGAACGCGTTATAGTTCAACATGAAAAGGTGAAGATTTGAATCTTTTACATTTTTATCGAGAACATAAAGTTTTAACCAATTCAATAAGTGTATTGTAAAGAAGTCGGCCCGTCTATCTAGACAGCTTAGATTGTAAATATTATACCAGTATCATTGATAAAGGTTATCTTTTTGTCTCTTCTATTTGTTTGTTTGTTTTTCCTCTCTCTTGCTGAGGGATGAGGAGATGATTTTGGTTTTTTTTCTCCCTTTTCTTTAATTAATTAGAAACAAATGCAGAATGAATGAAAGAATACAAAGAGCTTGCAAAAAAAAAACCAAGCCCATAAAAATTTTACTAAAGAAAGGAGTTTCAGCTAAGTAAAATATTACCCAGAAAATAATTATAAAAAGGTCCTCAAAACCAAAATTAATAAAGAAACATAAAACCTCATGATGGATCGAACGTCATTAGGGTTCCTCTCTACGTTTCTAAACACTCTATTGTTTCTTTTTTCTAAAGATCTCACAACAAAGCACACACTCCTAACCACAAGTGTGACCTTTCTCTCCGAAAAGTAGATGGAGGAGGAACTCCCTCATCGTCGCTCTAATATCCAAGCTAATTACGATGTCAAACTCTTGAAAAAGCAATTCCACATGGAATTTGCAAATTGAATGCAATCTGGCTGGAAACTTTGTTTTAACCTCATGTTTGTTGGTAGAGAATCTTCTTGTTGCATATTCAGAGATTGCAAATAATTTATTCTTTTAAATTTAGAAGAAAAAAATGTCAAGATTTAGCTCCTATACTTTGCATCATGTTGATTTAGTCTTAAAATCTTTTATAAATTAAGTGGTGTTCTCAAATTATAATTTTATTTGGATCTTAATGAATTTTTTAGTCTAACATTAATGTGAGGTTGACTAAAAAATTTGACAGGTTGTCTCGTCTCCATCATTACTTATGTACACATTTTAAATGTCTTGCTCTCGTAA

mRNA sequence

GAGGGATAAAAAAGAATAAGAGATTTTCTGACTTGGAATTATCCAGCAATCTTTCTTCTTCGATCAGCTGCTCTGCGCTTCATCTTCTTCAATTTTCCGTTTCCAATTCCATTGTTTCTGCTGCTCATATCCTTTCCCAATGTCAGATCCATTACAGAGATACCAAAATCTTGCCCTAACAGACTCTCTGGCGAAGAGTTACAGCTACCCATTAGCTTGTAAGGAGCTAAGCTTCTTAATCAGAAACGCTTTCAATAAACTTCCCAAGAATCTCCAATCCCTCATCTACCAACATATTATCACCGCCTTTCATCTCCTTCCGGAGTGTGGTTGATTTAACAAAAGAATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTTGTCTCGTCTCCATCATTACTTATGTACACATTTTAAATGTCTTGCTCTCGTAA

Coding sequence (CDS)

ATGCAGACGAGCTCTGCTGCTTCGGCTGCACATCTCCTTGCTCAGGGTGTTGAAGCTGTTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATCGTTGCTCATAAGAGGCGTAGTAAAGCACATCAGGAAGAAAAAGGTTCTGCTCAAGTCCCTCAAGACGTTCTCCTCCACATATTCCGCTTTCTAGATATTCAATCTTTAGTTTCAGCTGGGCTAGTCTGCCGGTCGTGGAATGTAGCAGCAGATGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGGTTGTTCTGATGACAACAGTAAACCCATTAATGATGAATACAGCGTGGATGACTTTACTAGCGCACCTCATGTTGATTGGAAAGAGGAATTCAAGAGAGCATATGTAGGTAATTCTTTGGGGAGAAACACATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAGTAAACAAATCAAGCCTTTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGATCTTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTGGGCAGTTGTCTCGTCTCCATCATTACTTATGTACACATTTTAAATGTCTTGCTCTCGTAA

Protein sequence

MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDVLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGSCLVSIITYVHILNVLLS

Homology

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BLAST of Lsi09G000710 vs. Swiss-Prot
Match: FB293_ARATH (F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 106/229 (46.29%), Postives = 134/229 (58.52%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEK-GSAQVPQD 60
           + TS+A SAA+LL + VEAVLPKQK+N AIVEFK+A VA KRRSK  +EE      +PQD
Sbjct: 59  INTSAAVSAANLLLKSVEAVLPKQKKNLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQD 118

Query: 61  VLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDD 120
           +L+HIF FL+I SLVS+  V RSWN A  +  LWQ Q+   F     N K +        
Sbjct: 119 ILIHIFSFLEISSLVSSAQVSRSWNQATHENSLWQSQFDLHF-----NHKVL-------- 178

Query: 121 FTSAPHVDWKEEFKRAYV-GNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKS--KQ 180
                 +DW+E FK+AY+  NS     SGRGYC +CD+IV    LRC N   R KS  K 
Sbjct: 179 IRMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKP 238

Query: 181 IKPLSINQVVEYVLNGSSELIYSSDSETDS-DEVVISEFWAL---PKYL 222
           +  ++ +QVV Y+L      I SSD E++S DE      W L   P YL
Sbjct: 239 LDLITTHQVVNYLLG-----IESSDDESESDDEAFPGRLWKLSYVPDYL 269

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BLAST of Lsi09G000710 vs. TrEMBL
Match: A0A0A0KNE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139890 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.7e-106
Identity = 195/225 (86.67%), Postives = 207/225 (92.00%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLA+ VEA LPKQKRNS IVEFKKA+V HKRR+KAHQEEKGS Q+PQDV
Sbjct: 63  MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRF+D+QSLVSAGLVCRSWNVAA+DEYLWQLQYTTFF CSDDNSK IND+ S D F
Sbjct: 123 LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF 182

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S P VDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRCPNDHGRNK+ QIK
Sbjct: 183 ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK 242

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGS 224
           PLSINQVVEYVLNG+SELIYSSDSETDSDE VISEFWALPKYLGS
Sbjct: 243 PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGS 287

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BLAST of Lsi09G000710 vs. TrEMBL
Match: A0A0B0MLR5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19059 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.9e-60
Identity = 120/231 (51.95%), Postives = 165/231 (71.43%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSA +AAH L Q  EA  PKQK++  + EFK+A VAHKRRSKAH+EEKG +Q+PQDV
Sbjct: 63  MQTSSAVAAAHFLLQSAEAAFPKQKKSLVVTEFKQAKVAHKRRSKAHREEKGPSQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNS--------KPIN 120
           L+HIF  LD+QSL+SAGLVCRSW +AA+D +LW+LQYT FFG S+++S        K +N
Sbjct: 123 LVHIFCLLDLQSLISAGLVCRSWTLAANDNHLWELQYTIFFGRSNNSSRTKTQWSGKSVN 182

Query: 121 DEYSV--DDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDH- 180
            +Y+   ++  +   +DWKE FKRAY G    +  S RGYC +CDTIV    L+C N   
Sbjct: 183 KDYTFWEENVITRTDIDWKETFKRAYKGTYSKKLMSSRGYCGYCDTIVWLKNLKCSNRQC 242

Query: 181 -GRNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPK 220
             ++++ QIKP+S +Q+V+Y+++G + +I SSDS+++SDE  +S  WA PK
Sbjct: 243 DPKHENAQIKPISPHQIVDYLMDGYTSMISSSDSDSESDEEPVSRLWAYPK 293

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BLAST of Lsi09G000710 vs. TrEMBL
Match: V4S902_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005526mg PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.4e-59
Identity = 128/234 (54.70%), Postives = 163/234 (69.66%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSA SAAHLL Q  EAVLPKQK+N AI E+K+A VA KR  KA QEE+GS Q+PQDV
Sbjct: 63  MQTSSAVSAAHLLFQSAEAVLPKQKKNLAITEYKQAKVALKRHRKARQEEQGSVQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDD--------NSKPIN 120
           L+HIFRFLD+QSLVS G VC SWN+AA D +LWQLQY  +F  SD+        + + I 
Sbjct: 123 LVHIFRFLDLQSLVSVGQVCWSWNLAASDNHLWQLQYAIYFSNSDNCLKTKVQQSGRVIE 182

Query: 121 DEYSV---DDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDH 180
           D+ +    D+  S P VDW+E FK AY+GNSL + TS RG+C HC+ +V  + L+C N+ 
Sbjct: 183 DKMNTLLQDNMASQPSVDWRETFKGAYIGNSLKKLTSNRGFCGHCNAVVWLNNLKCSNER 242

Query: 181 G--RNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYL 222
              + K++QIK LS  QVV+Y+L+    L  SSDS+++SDE  IS  WA PK+L
Sbjct: 243 CGLKFKNQQIKLLSPCQVVKYLLDDPLSLSSSSDSDSESDEESISSLWAYPKHL 296

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BLAST of Lsi09G000710 vs. TrEMBL
Match: A0A067F0X3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022368mg PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 127/234 (54.27%), Postives = 162/234 (69.23%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSA SAAHLL Q  EAVLPKQK+N AI E+K+A VA KR  KA QEE+GS Q+PQDV
Sbjct: 63  MQTSSAVSAAHLLFQSAEAVLPKQKKNLAITEYKQAKVALKRHCKARQEEQGSVQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDD--------NSKPIN 120
           L+HIFRFLD+QSLVS G +C SWN+AA D +LWQLQY  +F  SD+        + + I 
Sbjct: 123 LVHIFRFLDLQSLVSVGQICWSWNLAASDNHLWQLQYAIYFSNSDNCLKTKVQQSGRVIE 182

Query: 121 DEYSV---DDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDH 180
           D+ +    D+  S P VDW E FK AY+GNSL + TS RG+C HC+ +V  + L+C N+ 
Sbjct: 183 DKMNTLLQDNMASQPSVDWLETFKGAYIGNSLKKLTSNRGFCGHCNAVVWLNNLKCSNER 242

Query: 181 G--RNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYL 222
              + K++QIK LS  QVV+Y+L+    L  SSDS+++SDE  IS  WA PK+L
Sbjct: 243 CGLKFKNQQIKLLSPCQVVKYLLDDPLSLSSSSDSDSESDEESISSLWAYPKHL 296

[Close]

BLAST of Lsi09G000710 vs. TrEMBL
Match: A0A0D2T7V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G272800 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-58
Identity = 118/231 (51.08%), Postives = 163/231 (70.56%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQT SA +AAH L Q  EA  PKQK++  + EFK+A VAHKRRSKAH+EEKG +Q+PQDV
Sbjct: 1   MQTGSAVAAAHFLLQSAEAAFPKQKKSLVVTEFKQAKVAHKRRSKAHREEKGPSQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNS--------KPIN 120
           L+HIF  LD+QSL+SAGLVCRSW +AA+D +LW+LQYT FFG S+++S        K +N
Sbjct: 61  LVHIFCLLDLQSLISAGLVCRSWTLAANDNHLWELQYTIFFGRSNNSSRTKTQWSGKSVN 120

Query: 121 DEYSV--DDFTSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDH- 180
            +Y+   ++  +   +DWKE FKRAY G    +  S RGYC +CD IV    L+C N   
Sbjct: 121 KDYTFWEENVITRTDIDWKETFKRAYGGTYSKKLMSSRGYCGYCDMIVWLKNLKCSNRQC 180

Query: 181 -GRNKSKQIKPLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPK 220
             ++++ QIKP+S +Q+V+Y+++G + +I SSDS+++SDE  +S  WA PK
Sbjct: 181 DPKHENAQIKPISPHQIVDYLMDGYTSVISSSDSDSESDEEPVSRLWAYPK 231

[Close]

BLAST of Lsi09G000710 vs. TAIR10
Match: AT5G52880.1 (AT5G52880.1 F-box family protein)

HSP 1 Score: 161.4 bits (407), Expect = 7.0e-40
Identity = 106/229 (46.29%), Postives = 134/229 (58.52%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEK-GSAQVPQD 60
           + TS+A SAA+LL + VEAVLPKQK+N AIVEFK+A VA KRRSK  +EE      +PQD
Sbjct: 59  INTSAAVSAANLLLKSVEAVLPKQKKNLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQD 118

Query: 61  VLLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDD 120
           +L+HIF FL+I SLVS+  V RSWN A  +  LWQ Q+   F     N K +        
Sbjct: 119 ILIHIFSFLEISSLVSSAQVSRSWNQATHENSLWQSQFDLHF-----NHKVL-------- 178

Query: 121 FTSAPHVDWKEEFKRAYV-GNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKS--KQ 180
                 +DW+E FK+AY+  NS     SGRGYC +CD+IV    LRC N   R KS  K 
Sbjct: 179 IRMQSDIDWREAFKKAYIAANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKP 238

Query: 181 IKPLSINQVVEYVLNGSSELIYSSDSETDS-DEVVISEFWAL---PKYL 222
           +  ++ +QVV Y+L      I SSD E++S DE      W L   P YL
Sbjct: 239 LDLITTHQVVNYLLG-----IESSDDESESDDEAFPGRLWKLSYVPDYL 269

[Close]

BLAST of Lsi09G000710 vs. NCBI nr
Match: gi|659074330|ref|XP_008437546.1| (PREDICTED: F-box protein At5g52880 isoform X3 [Cucumis melo])

HSP 1 Score: 404.8 bits (1039), Expect = 1.0e-109
Identity = 201/225 (89.33%), Postives = 209/225 (92.89%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 1   MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 61  LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 120

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 121 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 180

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGS 224
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGS
Sbjct: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGS 225

[Close]

BLAST of Lsi09G000710 vs. NCBI nr
Match: gi|659074326|ref|XP_008437544.1| (PREDICTED: F-box protein At5g52880 isoform X1 [Cucumis melo])

HSP 1 Score: 404.8 bits (1039), Expect = 1.0e-109
Identity = 201/225 (89.33%), Postives = 209/225 (92.89%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 63  MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 123 LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 182

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 183 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 242

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGS 224
           PLSINQVVEYVLNGSSELIYSSDSETDSDE VISEFWALPKYLGS
Sbjct: 243 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGS 287

[Close]

BLAST of Lsi09G000710 vs. NCBI nr
Match: gi|700194735|gb|KGN49912.1| (hypothetical protein Csa_5G139890 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 5.3e-106
Identity = 195/225 (86.67%), Postives = 207/225 (92.00%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLA+ VEA LPKQKRNS IVEFKKA+V HKRR+KAHQEEKGS Q+PQDV
Sbjct: 63  MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRF+D+QSLVSAGLVCRSWNVAA+DEYLWQLQYTTFF CSDDNSK IND+ S D F
Sbjct: 123 LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF 182

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S P VDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRCPNDHGRNK+ QIK
Sbjct: 183 ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK 242

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGS 224
           PLSINQVVEYVLNG+SELIYSSDSETDSDE VISEFWALPKYLGS
Sbjct: 243 PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGS 287

[Close]

BLAST of Lsi09G000710 vs. NCBI nr
Match: gi|778699009|ref|XP_011654641.1| (PREDICTED: F-box protein At5g52880 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 5.3e-106
Identity = 195/225 (86.67%), Postives = 207/225 (92.00%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLA+ VEA LPKQKRNS IVEFKKA+V HKRR+KAHQEEKGS Q+PQDV
Sbjct: 1   MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV 60

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRF+D+QSLVSAGLVCRSWNVAA+DEYLWQLQYTTFF CSDDNSK IND+ S D F
Sbjct: 61  LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF 120

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S P VDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRCPNDHGRNK+ QIK
Sbjct: 121 ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK 180

Query: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEVVISEFWALPKYLGS 224
           PLSINQVVEYVLNG+SELIYSSDSETDSDE VISEFWALPKYLGS
Sbjct: 181 PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGS 225

[Close]

BLAST of Lsi09G000710 vs. NCBI nr
Match: gi|659074328|ref|XP_008437545.1| (PREDICTED: F-box protein At5g52880 isoform X2 [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 4.5e-89
Identity = 164/191 (85.86%), Postives = 175/191 (91.62%), Query Frame = 1


Query: 1   MQTSSAASAAHLLAQGVEAVLPKQKRNSAIVEFKKAIVAHKRRSKAHQEEKGSAQVPQDV 60
           MQTSSAASAA LLAQ VEA LPKQKRNS IVE+KKA+V HKRRSKAHQEEKGS Q+PQDV
Sbjct: 63  MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 122

Query: 61  LLHIFRFLDIQSLVSAGLVCRSWNVAADDEYLWQLQYTTFFGCSDDNSKPINDEYSVDDF 120
           LLHIFRFLD+QSL SAGLVCRSWNVAADDEYLWQLQYTTFFGC DDNSKPIND+ S DDF
Sbjct: 123 LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 182

Query: 121 --TSAPHVDWKEEFKRAYVGNSLGRNTSGRGYCKHCDTIVSFSTLRCPNDHGRNKSKQIK 180
             +S PHVDWKEEFK+AYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNK+KQIK
Sbjct: 183 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 242

Query: 181 PLSINQVVEYV 190
           PLSINQ+V+ +
Sbjct: 243 PLSINQIVKLI 253

The following BLAST results are available for this feature:

BLAST of Lsi09G000710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB293_ARATH	1.2e-38	46.29	F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1	[more]

BLAST of Lsi09G000710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNE5_CUCSA	3.7e-106	86.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139890 PE=4 SV=1	[more]
A0A0B0MLR5_GOSAR	8.9e-60	51.95	Uncharacterized protein OS=Gossypium arboreum GN=F383_19059 PE=4 SV=1	[more]
V4S902_9ROSI	4.4e-59	54.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005526mg PE=4 SV=1	[more]
A0A067F0X3_CITSI	1.7e-58	54.27	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022368mg PE=4 SV=1	[more]
A0A0D2T7V1_GOSRA	2.2e-58	51.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G272800 PE=4 SV=1	[more]

BLAST of Lsi09G000710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52880.1	7.0e-40	46.29	F-box family protein	[more]

BLAST of Lsi09G000710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074330\|ref\|XP_008437546.1\|	1.0e-109	89.33	PREDICTED: F-box protein At5g52880 isoform X3 [Cucumis melo]	[more]
gi\|659074326\|ref\|XP_008437544.1\|	1.0e-109	89.33	PREDICTED: F-box protein At5g52880 isoform X1 [Cucumis melo]	[more]
gi\|700194735\|gb\|KGN49912.1\|	5.3e-106	86.67	hypothetical protein Csa_5G139890 [Cucumis sativus]	[more]
gi\|778699009\|ref\|XP_011654641.1\|	5.3e-106	86.67	PREDICTED: F-box protein At5g52880 [Cucumis sativus]	[more]
gi\|659074328\|ref\|XP_008437545.1\|	4.5e-89	85.86	PREDICTED: F-box protein At5g52880 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G000710.1	Lsi09G000710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 56..97 score: 1.1
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 56..96 score: 4.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 50..96 score: 11
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 55..136 score: 3.14
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 55..154 score: 6.1
None	No IPR available	PANTHER	PTHR20995	FAMILY NOT NAMED	coord: 1..108 score: 5.9
None	No IPR available	PANTHER	PTHR20995:SF21	F-BOX FAMILY PROTEIN-RELATED	coord: 1..108 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G000710	Csa5G139890	Cucumber (Chinese Long) v2	culsiB322
Lsi09G000710	CSPI05G03610	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G000710	Cucsa.201750	Cucumber (Gy14) v1	cgylsiB347
Lsi09G000710	CmaCh15G010600	Cucurbita maxima (Rimu)	cmalsiB262
Lsi09G000710	CmoCh15G011180	Cucurbita moschata (Rifu)	cmolsiB249
Lsi09G000710	Cla004933	Watermelon (97103) v1	lsiwmB027
Lsi09G000710	ClCG01G000830	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G000710	MELO3C034012.2	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G000710	Cla97C01G000910	Watermelon (97103) v2	lsiwmbB007
Lsi09G000710	Cp4.1LG13g02870	Cucurbita pepo (Zucchini)	cpelsiB134
Lsi09G000710	CsaV3_5G000970	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G000710	Bottle gourd (USVL1VR-Ls)	lsilsiB010
Lsi09G000710	Bottle gourd (USVL1VR-Ls)	lsilsiB014
Lsi09G000710	Cucumber (Gy14) v1	cgylsiB413
Lsi09G000710	Cucurbita maxima (Rimu)	cmalsiB226
Lsi09G000710	Cucurbita maxima (Rimu)	cmalsiB298
Lsi09G000710	Cucurbita maxima (Rimu)	cmalsiB363
Lsi09G000710	Cucurbita maxima (Rimu)	cmalsiB536
Lsi09G000710	Cucurbita moschata (Rifu)	cmolsiB214
Lsi09G000710	Cucurbita moschata (Rifu)	cmolsiB286
Lsi09G000710	Cucurbita moschata (Rifu)	cmolsiB351
Lsi09G000710	Cucurbita moschata (Rifu)	cmolsiB520
Lsi09G000710	Cucurbita pepo (Zucchini)	cpelsiB019
Lsi09G000710	Cucurbita pepo (Zucchini)	cpelsiB163
Lsi09G000710	Cucurbita pepo (Zucchini)	cpelsiB486
Lsi09G000710	Cucurbita pepo (Zucchini)	cpelsiB579
Lsi09G000710	Wild cucumber (PI 183967)	cpilsiB150
Lsi09G000710	Cucumber (Chinese Long) v2	culsiB151
Lsi09G000710	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G000710	Melon (DHL92) v3.5.1	lsimeB031
Lsi09G000710	Melon (DHL92) v3.5.1	lsimeB035
Lsi09G000710	Watermelon (Charleston Gray)	lsiwcgB018
Lsi09G000710	Watermelon (Charleston Gray)	lsiwcgB021
Lsi09G000710	Watermelon (97103) v1	lsiwmB018
Lsi09G000710	Watermelon (97103) v1	lsiwmB023
Lsi09G000710	Cucumber (Gy14) v2	cgyblsiB137
Lsi09G000710	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G000710	Melon (DHL92) v3.6.1	lsimedB033
Lsi09G000710	Melon (DHL92) v3.6.1	lsimedB039
Lsi09G000710	Silver-seed gourd	carlsiB522
Lsi09G000710	Silver-seed gourd	carlsiB647
Lsi09G000710	Silver-seed gourd	carlsiB902
Lsi09G000710	Cucumber (Chinese Long) v3	cuclsiB164
Lsi09G000710	Cucumber (Chinese Long) v3	cuclsiB268
Lsi09G000710	Watermelon (97103) v2	lsiwmbB019
Lsi09G000710	Wax gourd	lsiwgoB015
Lsi09G000710	Wax gourd	lsiwgoB045