Cucsa.201750 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.201750
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionF-box protein
Locationscaffold01376 : 22727 .. 26042 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAATCCATTAGAGAGATACCACAAACTTTGCCTGATGGATTTTCTGGCGAAGAGTTACAGCTACCCATTAGCTTGTAAGGAGCTAAGCTTCTTAATCAGAGGTGCTTTCATTAAACTTCCCAAGAATCTCCAATCTCTCATTTACGAACATATTATCACCGCCTTTCATCTCCTTCCAGAGTAAGTCTTCTGTTTGTTCCCTTCATTCCATTTCTTTTCTTTCTGTTCATTTTTATAGACTCGTTTGATTTTTTGTTTTTTTGGGTATCAAAAGATTAGAGAAGATTTGGGTTGCTTTTGGTTATGGTTAGAAATTCAGTGATTTAGAATTTATGTGCTGAGTACTCATGTAGTTTTTTAGTTTCGATTTTCCGTATTTGAATCTAATTAGGAAATGTTGTGAATTGTTTGAATGTTTGATTTTGGCCATTTGGGAATTGTTCTGCTCAGTTCATTGATTAGGAAAATGTTTTTAAATTCTTTGTTTGTACTTGGTTGATTCTTGTATATTACTATTCATTTGTCACATCTGTCATTTTGCTGTCTTCGGCATGAGCTTGTCTTATTAGCTACTTCTTGTATAGTCTTTAGTTTCTTTAGTGGAGGAGAGTGATCATCTGTCCCGTTATCTATGGAATAGCTTTCCTTTTGAGGGTTCTATTGAATAGTTGGTGAGCAAAGATGAATATGCAGATGTAGCCAACTTTTTTCGTTTGAAGTTATGTACACCGTCGATTCTATCTTGTAGCATTGAATTTGAGCATAACTTCTATATTAATATGTATTTTCTGTGAATTTCTTCCTCTTTCCTCCCCCTTATTTGTTTACATTTTCTCAACGCTTATTAGAAAATGGGAGGTTTAATATAAAACCAATATGAAATTTTCTGATTAAGGTGTGGTTGATTTAACAAAAGAATGCAGACGAGCTCTGCTGCTTCTGCTGCACGTCTCCTTGCTCGGGCTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATTCAGTGATTGTAGAATTTAAGAAAGCAATGGTTGTTCATAAGAGGCGTACTAAAGCACATCAGGAAGAAAAAGGTGAATTATTTGCTTCTTTGCTATTATTATACATCAAATTGAACATATTTTTCATGTTTTGCAATTCAATCTGATTGTTAACTCACAAATTCTTTAGGTTCTTGTCAACTCCCTCAAGATGTTCTTCTCCACATCTTCCGCTTTATAGATGTTCAATCTTTAGTTTCAGCTGGGCTAGTATGCCGGTAATTATCTATCATGATATTTCCTCATCTATCAACAAAGTTTGTTATTACCTTAACCATTCTCCTATTCAACTATTCAACTTAGTTTACTAGCCCCTCAAAGTTCACAAGCATTGCCAACGCTATTGCTTCCTTTAAGATAATGGTCGTTATGTAATCAATGTGAAGGTCGTGGAATGTAGCAGCAGAGGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGTTTGTTCTGATGACAATAGTAAATCCATTAATGATAAAGACAGTGAGGATGGCTTTGCTAGCAGTAGCACACCTCGTGTTGATTGGAAAGAGGAATTCAAGAAAGCATATGTAGGTGAGAATTGACACGGTCTCTAATTTCTGAACAATAATATATATGCCATTGAGTGATCAACTTAAATTTAAGAAAAATACTATCGTCCATGTAGCTTGTAGTTAGAAATATTTTTAGGGTATCAAAGGCAAATTAGTCTATAGCCAATGAATTTGTTAGTAGCAGTTGATTACAAATAAAGTTGGTGGGAGTTATTGTATTCCTTTATCTTTTTATCTTTCAGTTTCAGTATTATTCTACTTATCTGTGGTTTGTTACTTTTTTTATTCTTAATAAAACAAAAAGTTTAATCAATAGTTTTGATTTGATAATAATTATTTGTACTATGGTGTTTGGAATGATAGGTAATTCTTTGGGGAGAAACACATATGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCGAATGATCATGGTAGAAATAAAAACACACAAATCAAGCCTCTGTCAATCAACCAGGTACTTTTTTCTATCCCTTTTTCCTAAGTTCATTTTCAGGGTCTTTTTGGTCAGCTTTCGCTCCTCTACTCTCTTATTCTGGTTACATGAATCTTTCTCTCTGACGGCAAGTGTAGTTTTTCTATTCTCTCCAGCACACTGAATTGAAATTGCTTTTGCTTATTTGAATGGTCACTTTTCATGAAACTGACTTCTTTTCAGGCTGATGGTAGTAGTATTGGCTTTTTTGCTATTGATTCTTTTAGAGGGGAAAAACACTTCCATGTTCTTTTGAAAGTATCTATAAAGATTTTGTAGCTGCTTTTTAAGTTTTTCAAGAATGCTTTTTTATGTATAGGGTTTTAAGTAAGATTGATTGGAGTCATTTCATTGTCTAAAAACTGATTCTGAATTGGCCTATCAGTTCAAGAAAAATTTAAACTAGATGCTGAAACCAGTGTTGGTTAAGTTGTCAAAAAATGTTCTTTAATTTTGCTTTTTTATAAATAAAGAAAAAACCATATTTGTTTAAAAGTTTCAATATTACCCACGATGTTTCATAAACATTTCAAAAATGACACTTGACTAGATATAGATATCTTTACCCGTAAGAATTTTATATGAAATTTGGTTGGGATGGGAATGATGTGACGAAGGTGACCAACAATGAAATTTGGATTGTTATATTGTTCCAAATCCTATTTTTTGGTTCATAATCTAAAAAGGGTGATTTTGAAAGGCTAATATTGCAACTTTTGAATGAATAAGAGTGTTTTGGACAACAGAATGGACCATCTGATGACCAAAATCCATAAATGAAACAATCAAATGATAAAGTAATCAAACAAACTGAAACATTTTTGGGTTTTGCTTTCGAACTGACGATGATGTGTCTCCTTCTTTTAGGTTGTTGAATATGTGTTAAATGGAGCGTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGATGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTAGGCAGCAGTGGAGCGAACTGATCCTATCCTAAAGGTGCAGATTTGAATCTTTTAACTTTTTGTCTTTGACGAGATAGTAATATTTTAACAACTGTAAAGAAGTTGCCTCGTCTATCTTGTTAACAGCTTAGATTGTAAATATATTTACCAATATCATTGAGAACGAATGAACTGGAGAGTATACAACAAATCAAGCCCACAAAAATTCTACTAAGGAAAGGGGGTTCGAGC

mRNA sequence

ATGTCAAATCCATTAGAGAGATACCACAAACTTTGCCTGATGGATTTTCTGGCGAAGAGTTACAGCTACCCATTAGCTTGTAAGGAGCTAAGCTTCTTAATCAGAGGTGCTTTCATTAAACTTCCCAAGAATCTCCAATCTCTCATTTACGAACATATTATCACCGCCTTTCATCTCCTTCCAGAAATGCAGACGAGCTCTGCTGCTTCTGCTGCACGTCTCCTTGCTCGGGCTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATTCAGTGATTGTAGAATTTAAGAAAGCAATGGTTGTTCATAAGAGGCGTACTAAAGCACATCAGGAAGAAAAAGGTTCTTGTCAACTCCCTCAAGATGTTCTTCTCCACATCTTCCGCTTTATAGATGTTCAATCTTTAGTTTCAGCTGGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAGAGGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGTTTGTTCTGATGACAATAGTAAATCCATTAATGATAAAGACAGTGAGGATGGCTTTGCTAGCAGTAGCACACCTCGTGTTGATTGGAAAGAGGAATTCAAGAAAGCATATGTAGGTAATTCTTTGGGGAGAAACACATATGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCGAATGATCATGGTAGAAATAAAAACACACAAATCAAGCCTCTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGAGCGTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGATGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTAGGCAGCAGTGGAGCGAACTGATCCTATCCTAAAGGTGCAGATTTGAATCTTTTAACTTTTTGTCTTTGACGAGATAGTAATATTTTAACAACTGTAAAGAAGTTGCCTCGTCTATCTTGTTAACAGCTTAGATTGTAAATATATTTACCAATAtcattgagaacgaatgaactggagagtatacaacaaatcaagcccacaaaaattctactaaggaaagggggttcgagc

Coding sequence (CDS)

ATGTCAAATCCATTAGAGAGATACCACAAACTTTGCCTGATGGATTTTCTGGCGAAGAGTTACAGCTACCCATTAGCTTGTAAGGAGCTAAGCTTCTTAATCAGAGGTGCTTTCATTAAACTTCCCAAGAATCTCCAATCTCTCATTTACGAACATATTATCACCGCCTTTCATCTCCTTCCAGAAATGCAGACGAGCTCTGCTGCTTCTGCTGCACGTCTCCTTGCTCGGGCTGTTGAAGCTGCTTTGCCTAAGCAAAAGAGAAATTCAGTGATTGTAGAATTTAAGAAAGCAATGGTTGTTCATAAGAGGCGTACTAAAGCACATCAGGAAGAAAAAGGTTCTTGTCAACTCCCTCAAGATGTTCTTCTCCACATCTTCCGCTTTATAGATGTTCAATCTTTAGTTTCAGCTGGGCTAGTATGCCGGTCGTGGAATGTAGCAGCAGAGGATGAATATCTGTGGCAGTTGCAGTATACAACATTTTTTGTTTGTTCTGATGACAATAGTAAATCCATTAATGATAAAGACAGTGAGGATGGCTTTGCTAGCAGTAGCACACCTCGTGTTGATTGGAAAGAGGAATTCAAGAAAGCATATGTAGGTAATTCTTTGGGGAGAAACACATATGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCGAATGATCATGGTAGAAATAAAAACACACAAATCAAGCCTCTGTCAATCAACCAGGTTGTTGAATATGTGTTAAATGGAGCGTCAGAATTGATTTATTCTTCAGATAGTGAAACTGATTCAGATGAAGATGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTACTTAGGCAGCAGTGGAGCGAACTGA

Protein sequence

MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLLPEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN*
Homology
[Close]
BLAST of Cucsa.201750 vs. Swiss-Prot
Match: FB293_ARATH (F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 2.7e-51
Identity = 122/289 (42.21%), Postives = 171/289 (59.17%), Query Frame = 1 

Query: 5   LERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLLPEMQ 64
           ++RY  L + +  +K+  YP AC ELS ++  A+   PKN+++LI++  ++AF LLP++ 
Sbjct: 1   MKRYQNLKVGEAFSKNRIYPFACNELSSILNLAYSLSPKNVKALIFQDTLSAFRLLPDIN 60

Query: 65  TSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSC-QLPQDVL 124
           TS+A SAA LL ++VEA LPKQK+N  IVEFK+A V  KRR+K  +EE      LPQD+L
Sbjct: 61  TSAAVSAANLLLKSVEAVLPKQKKNLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQDIL 120

Query: 125 LHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGFA 184
           +HIF F+++ SLVS+  V RSWN A  +  LWQ Q+   F     N K +    S+    
Sbjct: 121 IHIFSFLEISSLVSSAQVSRSWNQATHENSLWQSQFDLHF-----NHKVLIRMQSD---- 180

Query: 185 SSSTPRVDWKEEFKKAYV-GNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNK--NTQ 244
                 +DW+E FKKAY+  NS      GRGYC +CD+IV    LRC N   R K  N  
Sbjct: 181 ------IDWREAFKKAYIAANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKP 240

Query: 245 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVI-SEFWAL---PKYL 286
           +  ++ +QVV Y+L      I SSD E++SD++      W L   P YL
Sbjct: 241 LDLITTHQVVNYLLG-----IESSDDESESDDEAFPGRLWKLSYVPDYL 269

[Close]
BLAST of Cucsa.201750 vs. TrEMBL
Match: A0A0A0KNE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139890 PE=4 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 1.9e-165
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL
Sbjct: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ
Sbjct: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED 180
           DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED
Sbjct: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED 180

Query: 181 GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ 240
           GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ
Sbjct: 181 GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ 240

Query: 241 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN 292
           IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN
Sbjct: 241 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN 291

[Close]
BLAST of Cucsa.201750 vs. TrEMBL
Match: A0A0B0MLR5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_19059 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.7e-81
Identity = 154/293 (52.56%), Postives = 209/293 (71.33%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSN  ERY KLCL + L++ Y YP+ACKELSF++RGA+  LPK LQSL+++H +TA  LL
Sbjct: 1   MSNRTERYQKLCLEESLSRIYQYPIACKELSFILRGAYANLPKPLQSLVFQHTLTAIRLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSA +AA  L ++ EAA PKQK++ V+ EFK+A V HKRR+KAH+EEKG  QLPQ
Sbjct: 61  PEMQTSSAVAAAHFLLQSAEAAFPKQKKSLVVTEFKQAKVAHKRRSKAHREEKGPSQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNS--------KS 180
           DVL+HIF  +D+QSL+SAGLVCRSW +AA D +LW+LQYT FF  S+++S        KS
Sbjct: 121 DVLVHIFCLLDLQSLISAGLVCRSWTLAANDNHLWELQYTIFFGRSNNSSRTKTQWSGKS 180

Query: 181 INDKDSEDGFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPND 240
           +N   +       +   +DWKE FK+AY G    +    RGYC +CDTIV    L+C N 
Sbjct: 181 VNKDYTFWEENVITRTDIDWKETFKRAYKGTYSKKLMSSRGYCGYCDTIVWLKNLKCSNR 240

Query: 241 H--GRNKNTQIKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPK 284
               +++N QIKP+S +Q+V+Y+++G + +I SSDS+++SDE+ +S  WA PK
Sbjct: 241 QCDPKHENAQIKPISPHQIVDYLMDGYTSMISSSDSDSESDEEPVSRLWAYPK 293

[Close]
BLAST of Cucsa.201750 vs. TrEMBL
Match: A0A0D2Q2T7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G272800 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 4.2e-80
Identity = 152/293 (51.88%), Postives = 207/293 (70.65%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSN  ERY KLCL + L++ Y YP+ACKELSF++RGA+  LPK LQSL+++H +TA  LL
Sbjct: 1   MSNRTERYQKLCLEESLSRIYQYPIACKELSFILRGAYANLPKPLQSLVFQHTLTAIRLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQT SA +AA  L ++ EAA PKQK++ V+ EFK+A V HKRR+KAH+EEKG  QLPQ
Sbjct: 61  PEMQTGSAVAAAHFLLQSAEAAFPKQKKSLVVTEFKQAKVAHKRRSKAHREEKGPSQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNS--------KS 180
           DVL+HIF  +D+QSL+SAGLVCRSW +AA D +LW+LQYT FF  S+++S        KS
Sbjct: 121 DVLVHIFCLLDLQSLISAGLVCRSWTLAANDNHLWELQYTIFFGRSNNSSRTKTQWSGKS 180

Query: 181 INDKDSEDGFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPND 240
           +N   +       +   +DWKE FK+AY G    +    RGYC +CD IV    L+C N 
Sbjct: 181 VNKDYTFWEENVITRTDIDWKETFKRAYGGTYSKKLMSSRGYCGYCDMIVWLKNLKCSNR 240

Query: 241 H--GRNKNTQIKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPK 284
               +++N QIKP+S +Q+V+Y+++G + +I SSDS+++SDE+ +S  WA PK
Sbjct: 241 QCDPKHENAQIKPISPHQIVDYLMDGYTSVISSSDSDSESDEEPVSRLWAYPK 293

[Close]
BLAST of Cucsa.201750 vs. TrEMBL
Match: V4S902_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005526mg PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.5e-80
Identity = 163/298 (54.70%), Postives = 207/298 (69.46%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSN  ERY KL L + L + Y YP+ACKELSF+ RGA+ KLPKN+QSLI++  + AF LL
Sbjct: 1   MSNSTERYQKLGLKEALTRIYRYPIACKELSFIFRGAYSKLPKNVQSLIFQDSLAAFRLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSA SAA LL ++ EA LPKQK+N  I E+K+A V  KR  KA QEE+GS QLPQ
Sbjct: 61  PEMQTSSAVSAAHLLFQSAEAVLPKQKKNLAITEYKQAKVALKRHRKARQEEQGSVQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDD--------NSKS 180
           DVL+HIFRF+D+QSLVS G VC SWN+AA D +LWQLQY  +F  SD+        + + 
Sbjct: 121 DVLVHIFRFLDLQSLVSVGQVCWSWNLAASDNHLWQLQYAIYFSNSDNCLKTKVQQSGRV 180

Query: 181 INDKDS---EDGFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRC 240
           I DK +   +D  AS   P VDW+E FK AY+GNSL + T  RG+C HC+ +V  + L+C
Sbjct: 181 IEDKMNTLLQDNMASQ--PSVDWRETFKGAYIGNSLKKLTSNRGFCGHCNAVVWLNNLKC 240

Query: 241 PNDHG--RNKNTQIKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYL 286
            N+    + KN QIK LS  QVV+Y+L+    L  SSDS+++SDE+ IS  WA PK+L
Sbjct: 241 SNERCGLKFKNQQIKLLSPCQVVKYLLDDPLSLSSSSDSDSESDEESISSLWAYPKHL 296

[Close]
BLAST of Cucsa.201750 vs. TrEMBL
Match: A0A067F0X3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022368mg PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 162/298 (54.36%), Postives = 206/298 (69.13%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSN  ERY KL L + L + Y YP+ACKELSF+ RGA+ KLPKN+QSLI++  + AF LL
Sbjct: 1   MSNSTERYQKLGLKEALTRIYRYPIACKELSFIFRGAYSKLPKNVQSLIFQDSLAAFRLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSA SAA LL ++ EA LPKQK+N  I E+K+A V  KR  KA QEE+GS QLPQ
Sbjct: 61  PEMQTSSAVSAAHLLFQSAEAVLPKQKKNLAITEYKQAKVALKRHCKARQEEQGSVQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDD--------NSKS 180
           DVL+HIFRF+D+QSLVS G +C SWN+AA D +LWQLQY  +F  SD+        + + 
Sbjct: 121 DVLVHIFRFLDLQSLVSVGQICWSWNLAASDNHLWQLQYAIYFSNSDNCLKTKVQQSGRV 180

Query: 181 INDKDS---EDGFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRC 240
           I DK +   +D  AS   P VDW E FK AY+GNSL + T  RG+C HC+ +V  + L+C
Sbjct: 181 IEDKMNTLLQDNMASQ--PSVDWLETFKGAYIGNSLKKLTSNRGFCGHCNAVVWLNNLKC 240

Query: 241 PNDHG--RNKNTQIKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYL 286
            N+    + KN QIK LS  QVV+Y+L+    L  SSDS+++SDE+ IS  WA PK+L
Sbjct: 241 SNERCGLKFKNQQIKLLSPCQVVKYLLDDPLSLSSSSDSDSESDEESISSLWAYPKHL 296

[Close]
BLAST of Cucsa.201750 vs. TAIR10
Match: AT5G52880.1 (AT5G52880.1 F-box family protein)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-52
Identity = 122/289 (42.21%), Postives = 171/289 (59.17%), Query Frame = 1 

Query: 5   LERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLLPEMQ 64
           ++RY  L + +  +K+  YP AC ELS ++  A+   PKN+++LI++  ++AF LLP++ 
Sbjct: 1   MKRYQNLKVGEAFSKNRIYPFACNELSSILNLAYSLSPKNVKALIFQDTLSAFRLLPDIN 60

Query: 65  TSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSC-QLPQDVL 124
           TS+A SAA LL ++VEA LPKQK+N  IVEFK+A V  KRR+K  +EE      LPQD+L
Sbjct: 61  TSAAVSAANLLLKSVEAVLPKQKKNLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQDIL 120

Query: 125 LHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGFA 184
           +HIF F+++ SLVS+  V RSWN A  +  LWQ Q+   F     N K +    S+    
Sbjct: 121 IHIFSFLEISSLVSSAQVSRSWNQATHENSLWQSQFDLHF-----NHKVLIRMQSD---- 180

Query: 185 SSSTPRVDWKEEFKKAYV-GNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNK--NTQ 244
                 +DW+E FKKAY+  NS      GRGYC +CD+IV    LRC N   R K  N  
Sbjct: 181 ------IDWREAFKKAYIAANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKP 240

Query: 245 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVI-SEFWAL---PKYL 286
           +  ++ +QVV Y+L      I SSD E++SD++      W L   P YL
Sbjct: 241 LDLITTHQVVNYLLG-----IESSDDESESDDEAFPGRLWKLSYVPDYL 269

[Close]
BLAST of Cucsa.201750 vs. NCBI nr
Match: gi|700194735|gb|KGN49912.1| (hypothetical protein Csa_5G139890 [Cucumis sativus])

HSP 1 Score: 589.7 bits (1519), Expect = 2.7e-165
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL
Sbjct: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ
Sbjct: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED 180
           DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED
Sbjct: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED 180

Query: 181 GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ 240
           GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ
Sbjct: 181 GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ 240

Query: 241 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN 292
           IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN
Sbjct: 241 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN 291

[Close]
BLAST of Cucsa.201750 vs. NCBI nr
Match: gi|659074326|ref|XP_008437544.1| (PREDICTED: F-box protein At5g52880 isoform X1 [Cucumis melo])

HSP 1 Score: 542.7 bits (1397), Expect = 3.8e-151
Identity = 268/289 (92.73%), Postives = 276/289 (95.50%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSNPLERYHKL L+D L KSYSYPLACKELSFLIRGAFIKLPKNLQSLIY+HIITAFHLL
Sbjct: 1   MSNPLERYHKLSLIDSLGKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYQHIITAFHLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSAASAARLLA+AVEAALPKQKRNSVIVE+KKAMVVHKRR+KAHQEEKGSCQLPQ
Sbjct: 61  PEMQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED 180
           DVLLHIFRF+DVQSL SAGLVCRSWNVAA+DEYLWQLQYTTFF C DDNSK INDKDSED
Sbjct: 121 DVLLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSED 180

Query: 181 GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ 240
            FASSSTP VDWKEEFKKAYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNKN Q
Sbjct: 181 DFASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQ 240

Query: 241 IKPLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSG 290
           IKPLSINQVVEYVLNG+SELIYSSDSETDSDEDVISEFWALPKYLGS G
Sbjct: 241 IKPLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSRG 289

[Close]
BLAST of Cucsa.201750 vs. NCBI nr
Match: gi|659074328|ref|XP_008437545.1| (PREDICTED: F-box protein At5g52880 isoform X2 [Cucumis melo])

HSP 1 Score: 469.5 bits (1207), Expect = 4.1e-129
Identity = 230/253 (90.91%), Postives = 240/253 (94.86%), Query Frame = 1 

Query: 1   MSNPLERYHKLCLMDFLAKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYEHIITAFHLL 60
           MSNPLERYHKL L+D L KSYSYPLACKELSFLIRGAFIKLPKNLQSLIY+HIITAFHLL
Sbjct: 1   MSNPLERYHKLSLIDSLGKSYSYPLACKELSFLIRGAFIKLPKNLQSLIYQHIITAFHLL 60

Query: 61  PEMQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQ 120
           PEMQTSSAASAARLLA+AVEAALPKQKRNSVIVE+KKAMVVHKRR+KAHQEEKGSCQLPQ
Sbjct: 61  PEMQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQ 120

Query: 121 DVLLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSED 180
           DVLLHIFRF+DVQSL SAGLVCRSWNVAA+DEYLWQLQYTTFF C DDNSK INDKDSED
Sbjct: 121 DVLLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSED 180

Query: 181 GFASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQ 240
            FASSSTP VDWKEEFKKAYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNKN Q
Sbjct: 181 DFASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQ 240

Query: 241 IKPLSINQVVEYV 254
           IKPLSINQ+V+ +
Sbjct: 241 IKPLSINQIVKLI 253

[Close]
BLAST of Cucsa.201750 vs. NCBI nr
Match: gi|778699009|ref|XP_011654641.1| (PREDICTED: F-box protein At5g52880 [Cucumis sativus])

HSP 1 Score: 464.5 bits (1194), Expect = 1.3e-127
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1 

Query: 63  MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV 122
           MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV
Sbjct: 1   MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV 60

Query: 123 LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF 182
           LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF
Sbjct: 61  LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF 120

Query: 183 ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK 242
           ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK
Sbjct: 121 ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK 180

Query: 243 PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN 292
           PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN
Sbjct: 181 PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSGAN 229

[Close]
BLAST of Cucsa.201750 vs. NCBI nr
Match: gi|659074330|ref|XP_008437546.1| (PREDICTED: F-box protein At5g52880 isoform X3 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 8.1e-117
Identity = 211/227 (92.95%), Postives = 217/227 (95.59%), Query Frame = 1 

Query: 63  MQTSSAASAARLLARAVEAALPKQKRNSVIVEFKKAMVVHKRRTKAHQEEKGSCQLPQDV 122
           MQTSSAASAARLLA+AVEAALPKQKRNSVIVE+KKAMVVHKRR+KAHQEEKGSCQLPQDV
Sbjct: 1   MQTSSAASAARLLAQAVEAALPKQKRNSVIVEYKKAMVVHKRRSKAHQEEKGSCQLPQDV 60

Query: 123 LLHIFRFIDVQSLVSAGLVCRSWNVAAEDEYLWQLQYTTFFVCSDDNSKSINDKDSEDGF 182
           LLHIFRF+DVQSL SAGLVCRSWNVAA+DEYLWQLQYTTFF C DDNSK INDKDSED F
Sbjct: 61  LLHIFRFLDVQSLGSAGLVCRSWNVAADDEYLWQLQYTTFFGCPDDNSKPINDKDSEDDF 120

Query: 183 ASSSTPRVDWKEEFKKAYVGNSLGRNTYGRGYCKHCDTIVSFSTLRCPNDHGRNKNTQIK 242
           ASSSTP VDWKEEFKKAYVGNSLGRNT GRGYCKHCDTIVSFSTLRC NDHGRNKN QIK
Sbjct: 121 ASSSTPHVDWKEEFKKAYVGNSLGRNTCGRGYCKHCDTIVSFSTLRCTNDHGRNKNKQIK 180

Query: 243 PLSINQVVEYVLNGASELIYSSDSETDSDEDVISEFWALPKYLGSSG 290
           PLSINQVVEYVLNG+SELIYSSDSETDSDEDVISEFWALPKYLGS G
Sbjct: 181 PLSINQVVEYVLNGSSELIYSSDSETDSDEDVISEFWALPKYLGSRG 227

The following BLAST results are available for this feature:
BLAST of Cucsa.201750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB293_ARATH2.7e-5142.21F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1[more]
BLAST of Cucsa.201750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNE5_CUCSA1.9e-165100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139890 PE=4 SV=1[more]
A0A0B0MLR5_GOSAR1.7e-8152.56Uncharacterized protein OS=Gossypium arboreum GN=F383_19059 PE=4 SV=1[more]
A0A0D2Q2T7_GOSRA4.2e-8051.88Uncharacterized protein OS=Gossypium raimondii GN=B456_008G272800 PE=4 SV=1[more]
V4S902_9ROSI5.5e-8054.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005526mg PE=4 SV=1[more]
A0A067F0X3_CITSI2.1e-7954.36Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022368mg PE=4 SV=1[more]
BLAST of Cucsa.201750 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52880.11.5e-5242.21 F-box family protein[more]
BLAST of Cucsa.201750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194735|gb|KGN49912.1|2.7e-165100.00hypothetical protein Csa_5G139890 [Cucumis sativus][more]
gi|659074326|ref|XP_008437544.1|3.8e-15192.73PREDICTED: F-box protein At5g52880 isoform X1 [Cucumis melo][more]
gi|659074328|ref|XP_008437545.1|4.1e-12990.91PREDICTED: F-box protein At5g52880 isoform X2 [Cucumis melo][more]
gi|778699009|ref|XP_011654641.1|1.3e-127100.00PREDICTED: F-box protein At5g52880 [Cucumis sativus][more]
gi|659074330|ref|XP_008437546.1|8.1e-11792.95PREDICTED: F-box protein At5g52880 isoform X3 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.201750.1Cucsa.201750.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 116..159
score: 2.7
IPR001810F-box domainSMARTSM00256fbox_2coord: 118..158
score: 1.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 112..158
score: 10
IPR001810F-box domainunknownSSF81383F-box domaincoord: 116..199
score: 6.28
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 116..156
score: 9.1
NoneNo IPR availablePANTHERPTHR20995FAMILY NOT NAMEDcoord: 54..173
score: 2.2
NoneNo IPR availablePANTHERPTHR20995:SF21F-BOX FAMILY PROTEIN-RELATEDcoord: 54..173
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.201750Cla004933Watermelon (97103) v1cgywmB400
Cucsa.201750Csa5G139890Cucumber (Chinese Long) v2cgycuB309
Cucsa.201750ClCG01G000830Watermelon (Charleston Gray)cgywcgB375
Cucsa.201750CSPI05G03610Wild cucumber (PI 183967)cgycpiB322
Cucsa.201750CmaCh15G010600Cucurbita maxima (Rimu)cgycmaB0599
Cucsa.201750CmoCh15G011180Cucurbita moschata (Rifu)cgycmoB0600
Cucsa.201750Lsi09G000710Bottle gourd (USVL1VR-Ls)cgylsiB347
Cucsa.201750Cp4.1LG13g02870Cucurbita pepo (Zucchini)cgycpeB0571
Cucsa.201750MELO3C034012.2Melon (DHL92) v3.6.1cgymedB363
Cucsa.201750CsaV3_5G000970Cucumber (Chinese Long) v3cgycucB327
Cucsa.201750Cla97C01G000910Watermelon (97103) v2cgywmbB379
Cucsa.201750Carg27015Silver-seed gourdcarcgyB0650
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.201750Cucumber (Chinese Long) v3cgycucB325
Cucsa.201750Watermelon (97103) v2cgywmbB380
Cucsa.201750Watermelon (97103) v2cgywmbB381
Cucsa.201750Wax gourdcgywgoB425
Cucsa.201750Wax gourdcgywgoB428
Cucsa.201750Cucumber (Gy14) v1cgycgyB116
Cucsa.201750Cucurbita maxima (Rimu)cgycmaB0600
Cucsa.201750Cucurbita maxima (Rimu)cgycmaB0601
Cucsa.201750Cucurbita maxima (Rimu)cgycmaB0602
Cucsa.201750Cucurbita moschata (Rifu)cgycmoB0597
Cucsa.201750Cucurbita moschata (Rifu)cgycmoB0601
Cucsa.201750Cucurbita moschata (Rifu)cgycmoB0602
Cucsa.201750Cucurbita moschata (Rifu)cgycmoB0603
Cucsa.201750Wild cucumber (PI 183967)cgycpiB320
Cucsa.201750Cucumber (Chinese Long) v2cgycuB307
Cucsa.201750Melon (DHL92) v3.5.1cgymeB367
Cucsa.201750Melon (DHL92) v3.5.1cgymeB368
Cucsa.201750Watermelon (Charleston Gray)cgywcgB377
Cucsa.201750Watermelon (97103) v1cgywmB397
Cucsa.201750Watermelon (97103) v1cgywmB398
Cucsa.201750Cucurbita pepo (Zucchini)cgycpeB0570
Cucsa.201750Cucurbita pepo (Zucchini)cgycpeB0573
Cucsa.201750Cucurbita pepo (Zucchini)cgycpeB0576
Cucsa.201750Bottle gourd (USVL1VR-Ls)cgylsiB349
Cucsa.201750Melon (DHL92) v3.6.1cgymedB364
Cucsa.201750Melon (DHL92) v3.6.1cgymedB366
Cucsa.201750Silver-seed gourdcarcgyB1107
Cucsa.201750Silver-seed gourdcarcgyB0800