Lsi09G000470 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G000470
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 406129 .. 406481 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCAAAAATGGGCCTCAAAGAAACATCATCAGCCATCAATGGCGACAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTTCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGTGGGTTTTCTTTTTCTCCTTCCATTTTTTTCTCTGTATGTGATGTTAACTGCTCTCTTTTCACTAGTAAACAAAAATCTTTTGCAGCTGAGTTTTCATTTTCGTTTTCGTTTCTCTTTTGTCAGTTTCATCAATCAATCAATGCAATCGACTGAGAGTGCATTTTTCTCTATGATTCGAGTTATGTTGATGGAGATTGCCATTTATGGATCTTGA

mRNA sequence

CCACCAAAAATGGGCCTCAAAGAAACATCATCAGCCATCAATGGCGACAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTTCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATTTTCATCAATCAATCAATGCAATCGACTGAGAGTGCATTTTTCTCTATGATTCGAGTTATGTTGATGGAGATTGCCATTTATGGATCTTGA

Coding sequence (CDS)

ATGGGCCTCAAAGAAACATCATCAGCCATCAATGGCGACAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTTCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATTTTCATCAATCAATCAATGCAATCGACTGAGAGTGCATTTTTCTCTATGATTCGAGTTATGTTGATGGAGATTGCCATTTATGGATCTTGA

Protein sequence

MGLKETSSAINGDNSTIKIVIGETPFISHGPFCSSGVFDHFLIFINQSMQSTESAFFSMIRVMLMEIAIYGS
Homology
[Close]
BLAST of Lsi09G000470 vs. TrEMBL
Match: A0A0A0KLZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139670 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.4e-14
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 1  MGLKETSSAINGDNSTIKIVIGETPFISHGP-FCSSGVFDHFLIFINQ 48
          MGLKET+SAING NSTIKIVI ETPFISHGP  CSSGVFDHFLIFINQ
Sbjct: 1  MGLKETASAINGGNSTIKIVIEETPFISHGPSSCSSGVFDHFLIFINQ 48

[Close]
BLAST of Lsi09G000470 vs. NCBI nr
Match: gi|700194712|gb|KGN49889.1| (hypothetical protein Csa_5G139670 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 9.2e-14
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 1  MGLKETSSAINGDNSTIKIVIGETPFISHGP-FCSSGVFDHFLIFINQ 48
          MGLKET+SAING NSTIKIVI ETPFISHGP  CSSGVFDHFLIFINQ
Sbjct: 1  MGLKETASAINGGNSTIKIVIEETPFISHGPSSCSSGVFDHFLIFINQ 48

The following BLAST results are available for this feature:
BLAST of Lsi09G000470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G000470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ8_CUCSA6.4e-1489.58Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139670 PE=4 SV=1[more]
BLAST of Lsi09G000470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G000470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194712|gb|KGN49889.1|9.2e-1489.58hypothetical protein Csa_5G139670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G000470.1Lsi09G000470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G000470Csa5G139670Cucumber (Chinese Long) v2culsiB322
Lsi09G000470CsaV3_5G000750Cucumber (Chinese Long) v3cuclsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G000470Cucurbita maxima (Rimu)cmalsiB536
Lsi09G000470Cucurbita moschata (Rifu)cmolsiB214
Lsi09G000470Cucurbita moschata (Rifu)cmolsiB249
Lsi09G000470Cucurbita moschata (Rifu)cmolsiB286
Lsi09G000470Cucurbita moschata (Rifu)cmolsiB351
Lsi09G000470Cucurbita moschata (Rifu)cmolsiB520
Lsi09G000470Cucurbita pepo (Zucchini)cpelsiB019
Lsi09G000470Cucurbita pepo (Zucchini)cpelsiB163
Lsi09G000470Cucurbita pepo (Zucchini)cpelsiB134
Lsi09G000470Cucurbita pepo (Zucchini)cpelsiB486
Lsi09G000470Cucurbita pepo (Zucchini)cpelsiB579
Lsi09G000470Wild cucumber (PI 183967)cpilsiB150
Lsi09G000470Wild cucumber (PI 183967)cpilsiB322
Lsi09G000470Cucumber (Chinese Long) v2culsiB151
Lsi09G000470Melon (DHL92) v3.5.1lsimeB012
Lsi09G000470Melon (DHL92) v3.5.1lsimeB031
Lsi09G000470Melon (DHL92) v3.5.1lsimeB035
Lsi09G000470Watermelon (Charleston Gray)lsiwcgB008
Lsi09G000470Watermelon (Charleston Gray)lsiwcgB018
Lsi09G000470Watermelon (Charleston Gray)lsiwcgB021
Lsi09G000470Watermelon (97103) v1lsiwmB018
Lsi09G000470Watermelon (97103) v1lsiwmB023
Lsi09G000470Watermelon (97103) v1lsiwmB027
Lsi09G000470Cucumber (Gy14) v2cgyblsiB137
Lsi09G000470Cucumber (Gy14) v2cgyblsiB294
Lsi09G000470Melon (DHL92) v3.6.1lsimedB012
Lsi09G000470Melon (DHL92) v3.6.1lsimedB033
Lsi09G000470Melon (DHL92) v3.6.1lsimedB039
Lsi09G000470Silver-seed gourdcarlsiB276
Lsi09G000470Silver-seed gourdcarlsiB457
Lsi09G000470Silver-seed gourdcarlsiB487
Lsi09G000470Silver-seed gourdcarlsiB902
Lsi09G000470Cucumber (Chinese Long) v3cuclsiB164
Lsi09G000470Cucumber (Chinese Long) v3cuclsiB268
Lsi09G000470Watermelon (97103) v2lsiwmbB007
Lsi09G000470Watermelon (97103) v2lsiwmbB019
Lsi09G000470Wax gourdlsiwgoB024
Lsi09G000470Wax gourdlsiwgoB045
Lsi09G000470Bottle gourd (USVL1VR-Ls)lsilsiB010
Lsi09G000470Bottle gourd (USVL1VR-Ls)lsilsiB014
Lsi09G000470Cucumber (Gy14) v1cgylsiB347
Lsi09G000470Cucumber (Gy14) v1cgylsiB413
Lsi09G000470Cucurbita maxima (Rimu)cmalsiB226
Lsi09G000470Cucurbita maxima (Rimu)cmalsiB262
Lsi09G000470Cucurbita maxima (Rimu)cmalsiB298
Lsi09G000470Cucurbita maxima (Rimu)cmalsiB363