Lsi08G015360 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G015360
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 23371898 .. 23372701 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGGTGGGGACAGACTCCATCCCAGCCCTCCAACTATGTCAGTATTCTTCATCTTCGAGAACGGTGGCTCAAAGAAAATGAGCCAAACCAGAAAGAGAAGGAAGATTTGAAACAGCTTGACCAACAAGAACAGCAACAGAAGGTTCTGCGGACGGAACCTAAGGAGAAGGATGATCAGAAGCCGGTGGTTCAAAAACCTCGAAGCAATGCTTCTTCTTGGAGCAGAAATGGGAGTGGGAATTTTCAGAGGTATTATCGAGCTGTACCGGCGAGTAATCCGCGCAATGTGAACGAGACGTGCAAGAAGACTGAGAATAAAGGCGAGCCTCAGCTGGCTGTTCCTCAAATCGAGCGAGATGAGAAGAAGGAAAAGAACTCTAAAAGGAAGGGTCCCAAGAAGAACCCTAGATTACAGAAGGATGAGATGGATAAAACGTCACCAACACCTGAGGAGAACTTGAAGGAGGAAATGCGAGAGACGGAATGCGAGGTTAAGGTGCAGAACCGGAAGAAAAATATGAGGGCAAGAAAAATCGATGAAAAGAAGGGGACTGGGAGTCAATGTGGACCTGAAAAAACTGGCTACACGCATAAGATGAAGGAGATGGAAAACAAATTAAGTCTTATTTCAGTGAGTTTTGAAATTAAAAGAGGGAGGAATAATGGTGTTTACAGAGGCAGTAGTCAAGGCAATCGGAATTCCAGAGATCATCGGAATCTTGATCGTTGGGGTCCCCGTAAACAGAGGGATGTTGGAATGATTTGGGTGAGGAAGGACGAGCTTTCAAAAGTTGCATAG

mRNA sequence

ATGCAAGGGTGGGGACAGACTCCATCCCAGCCCTCCAACTATGTCAGTATTCTTCATCTTCGAGAACGGTGGCTCAAAGAAAATGAGCCAAACCAGAAAGAGAAGGAAGATTTGAAACAGCTTGACCAACAAGAACAGCAACAGAAGGTTCTGCGGACGGAACCTAAGGAGAAGGATGATCAGAAGCCGGTGGTTCAAAAACCTCGAAGCAATGCTTCTTCTTGGAGCAGAAATGGGAGTGGGAATTTTCAGAGGTATTATCGAGCTGTACCGGCGAGTAATCCGCGCAATGTGAACGAGACGTGCAAGAAGACTGAGAATAAAGGCGAGCCTCAGCTGGCTGTTCCTCAAATCGAGCGAGATGAGAAGAAGGAAAAGAACTCTAAAAGGAAGGGTCCCAAGAAGAACCCTAGATTACAGAAGGATGAGATGGATAAAACGTCACCAACACCTGAGGAGAACTTGAAGGAGGAAATGCGAGAGACGGAATGCGAGGTTAAGGTGCAGAACCGGAAGAAAAATATGAGGGCAAGAAAAATCGATGAAAAGAAGGGGACTGGGAGTCAATGTGGACCTGAAAAAACTGGCTACACGCATAAGATGAAGGAGATGGAAAACAAATTAAGTCTTATTTCAGTGAGTTTTGAAATTAAAAGAGGGAGGAATAATGGTGTTTACAGAGGCAGTAGTCAAGGCAATCGGAATTCCAGAGATCATCGGAATCTTGATCGTTGGGGTCCCCGTAAACAGAGGGATGTTGGAATGATTTGGGTGAGGAAGGACGAGCTTTCAAAAGTTGCATAG

Coding sequence (CDS)

ATGCAAGGGTGGGGACAGACTCCATCCCAGCCCTCCAACTATGTCAGTATTCTTCATCTTCGAGAACGGTGGCTCAAAGAAAATGAGCCAAACCAGAAAGAGAAGGAAGATTTGAAACAGCTTGACCAACAAGAACAGCAACAGAAGGTTCTGCGGACGGAACCTAAGGAGAAGGATGATCAGAAGCCGGTGGTTCAAAAACCTCGAAGCAATGCTTCTTCTTGGAGCAGAAATGGGAGTGGGAATTTTCAGAGGTATTATCGAGCTGTACCGGCGAGTAATCCGCGCAATGTGAACGAGACGTGCAAGAAGACTGAGAATAAAGGCGAGCCTCAGCTGGCTGTTCCTCAAATCGAGCGAGATGAGAAGAAGGAAAAGAACTCTAAAAGGAAGGGTCCCAAGAAGAACCCTAGATTACAGAAGGATGAGATGGATAAAACGTCACCAACACCTGAGGAGAACTTGAAGGAGGAAATGCGAGAGACGGAATGCGAGGTTAAGGTGCAGAACCGGAAGAAAAATATGAGGGCAAGAAAAATCGATGAAAAGAAGGGGACTGGGAGTCAATGTGGACCTGAAAAAACTGGCTACACGCATAAGATGAAGGAGATGGAAAACAAATTAAGTCTTATTTCAGTGAGTTTTGAAATTAAAAGAGGGAGGAATAATGGTGTTTACAGAGGCAGTAGTCAAGGCAATCGGAATTCCAGAGATCATCGGAATCTTGATCGTTGGGGTCCCCGTAAACAGAGGGATGTTGGAATGATTTGGGTGAGGAAGGACGAGCTTTCAAAAGTTGCATAG

Protein sequence

MQGWGQTPSQPSNYVSILHLRERWLKENEPNQKEKEDLKQLDQQEQQQKVLRTEPKEKDDQKPVVQKPRSNASSWSRNGSGNFQRYYRAVPASNPRNVNETCKKTENKGEPQLAVPQIERDEKKEKNSKRKGPKKNPRLQKDEMDKTSPTPEENLKEEMRETECEVKVQNRKKNMRARKIDEKKGTGSQCGPEKTGYTHKMKEMENKLSLISVSFEIKRGRNNGVYRGSSQGNRNSRDHRNLDRWGPRKQRDVGMIWVRKDELSKVA
Homology
[Close]
BLAST of Lsi08G015360 vs. TrEMBL
Match: A0A0A0LNR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354630 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 202/269 (75.09%), Postives = 224/269 (83.27%), Query Frame = 1 

Query: 1   MQGWG--QTPSQPSNYVSILHLRERWLKENEPNQKEKEDLKQLDQQEQQQKVLRTEPKEK 60
           M+ WG  Q  SQPSNYV+IL LRERWLKENE   KEKEDLKQL+ +E++QKV RTEP +K
Sbjct: 1   MEEWGRSQISSQPSNYVTILDLRERWLKENERKHKEKEDLKQLELEEREQKVPRTEPDKK 60

Query: 61  DDQKPVVQKPRSNASSWSRNGSGNFQRYYRAVPASNPRNVNETCKKTENKGEPQLAVPQI 120
           DDQKPVV+KPR NASSWSRNGS   +RYYRA    NPRNVN+ CKK  ++ EP+LA+P+I
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGSEKVRRYYRA----NPRNVNKICKKILDESEPELAIPRI 120

Query: 121 ERDEKKEKNSKRKGPKKNPRLQKDEMDKTSPTPEENLKEEMRETECEVKVQNRKKNMRAR 180
           ERD+KKEK    KG KKN R++K +MDKTSPTPEENLKE  RE ECEV VQN KKN+RAR
Sbjct: 121 ERDKKKEK----KGRKKNRRIRKGKMDKTSPTPEENLKEGFREKECEVGVQNGKKNVRAR 180

Query: 181 KIDEKKGTGSQCGPEKTGYTHKMKEMENKLSLISVSFEIKRGRNNGVYRGSSQGNRNSRD 240
           KIDEKK TGS+ GPEKTGY H+MKEMENKLSLISVSFEIKRGRNNGV RGSSQGNRN RD
Sbjct: 181 KIDEKKWTGSRRGPEKTGYAHEMKEMENKLSLISVSFEIKRGRNNGVDRGSSQGNRNFRD 240

Query: 241 HRNLDRWGPRKQRDVGMIWVRKDELSKVA 268
            RNLDR GPRKQRDV MIWVRKDELSK A
Sbjct: 241 RRNLDRRGPRKQRDVKMIWVRKDELSKGA 261

[Close]
BLAST of Lsi08G015360 vs. NCBI nr
Match: gi|659087594|ref|XP_008444535.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Cucumis melo])

HSP 1 Score: 357.8 bits (917), Expect = 1.6e-95
Identity = 204/270 (75.56%), Postives = 225/270 (83.33%), Query Frame = 1 

Query: 1   MQGWGQT--PSQPSNYVSILHLRERWLKENEPNQKEKEDLKQLDQQEQQQKVLRTEPKEK 60
           M+ WG+T  PS+PSNYV+IL LRERWLKENE   KEKEDLKQL+ +E+QQKV RTEP++K
Sbjct: 1   MEEWGRTRIPSRPSNYVTILDLRERWLKENEREHKEKEDLKQLELEERQQKVPRTEPEKK 60

Query: 61  DDQKPVVQKPRSNASSWSRNGSGNFQRYYRAVPASNPRNVNETCKKTENKGEPQLAVPQI 120
           DDQKPVV+KPR NASSWSRNG    + YYRAVP SNP+NVNETCKK E++ EP+L VP I
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGREKVRMYYRAVPVSNPQNVNETCKKIEDEREPELPVPPI 120

Query: 121 ERDEKKEKNSKRKGPKKNPRLQKDEMDKTSPTPEENLKEEMRETECEVKVQNRKKNMRAR 180
           ERD+KKEK    KG KK    QK +MDKTSPTPEENLKEE+ E ECEV VQN KKN+RAR
Sbjct: 121 ERDKKKEK----KGRKKKRGAQKGKMDKTSPTPEENLKEEVWEKECEVGVQNGKKNVRAR 180

Query: 181 KIDEKKGTGSQCGPEKTGYTHKMKEMENKLSLISVSFEIKRGRNNGVYRG-SSQGNRNSR 240
           KIDEKKGTGSQ GPEKTGY H+MKEMENKLSLISVS EIKRG NNGV RG SSQGNRN R
Sbjct: 181 KIDEKKGTGSQRGPEKTGYAHEMKEMENKLSLISVSLEIKRGTNNGVDRGSSSQGNRNFR 240

Query: 241 DHRNLDRWGPRKQRDVGMIWVRKDELSKVA 268
            HRNLDR GPRKQ+DV MIWVRKDELSK A
Sbjct: 241 YHRNLDRRGPRKQKDVKMIWVRKDELSKGA 266

[Close]
BLAST of Lsi08G015360 vs. NCBI nr
Match: gi|778670947|ref|XP_011649562.1| (PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 1.8e-94
Identity = 202/269 (75.09%), Postives = 224/269 (83.27%), Query Frame = 1 

Query: 1   MQGWG--QTPSQPSNYVSILHLRERWLKENEPNQKEKEDLKQLDQQEQQQKVLRTEPKEK 60
           M+ WG  Q  SQPSNYV+IL LRERWLKENE   KEKEDLKQL+ +E++QKV RTEP +K
Sbjct: 1   MEEWGRSQISSQPSNYVTILDLRERWLKENERKHKEKEDLKQLELEEREQKVPRTEPDKK 60

Query: 61  DDQKPVVQKPRSNASSWSRNGSGNFQRYYRAVPASNPRNVNETCKKTENKGEPQLAVPQI 120
           DDQKPVV+KPR NASSWSRNGS   +RYYRA    NPRNVN+ CKK  ++ EP+LA+P+I
Sbjct: 61  DDQKPVVRKPRRNASSWSRNGSEKVRRYYRA----NPRNVNKICKKILDESEPELAIPRI 120

Query: 121 ERDEKKEKNSKRKGPKKNPRLQKDEMDKTSPTPEENLKEEMRETECEVKVQNRKKNMRAR 180
           ERD+KKEK    KG KKN R++K +MDKTSPTPEENLKE  RE ECEV VQN KKN+RAR
Sbjct: 121 ERDKKKEK----KGRKKNRRIRKGKMDKTSPTPEENLKEGFREKECEVGVQNGKKNVRAR 180

Query: 181 KIDEKKGTGSQCGPEKTGYTHKMKEMENKLSLISVSFEIKRGRNNGVYRGSSQGNRNSRD 240
           KIDEKK TGS+ GPEKTGY H+MKEMENKLSLISVSFEIKRGRNNGV RGSSQGNRN RD
Sbjct: 181 KIDEKKWTGSRRGPEKTGYAHEMKEMENKLSLISVSFEIKRGRNNGVDRGSSQGNRNFRD 240

Query: 241 HRNLDRWGPRKQRDVGMIWVRKDELSKVA 268
            RNLDR GPRKQRDV MIWVRKDELSK A
Sbjct: 241 RRNLDRRGPRKQRDVKMIWVRKDELSKGA 261

The following BLAST results are available for this feature:
BLAST of Lsi08G015360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G015360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNR9_CUCSA1.2e-9475.09Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354630 PE=4 SV=1[more]
BLAST of Lsi08G015360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G015360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087594|ref|XP_008444535.1|1.6e-9575.56PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Cucumis me... [more]
gi|778670947|ref|XP_011649562.1|1.8e-9475.09PREDICTED: uncharacterized protein DDB_G0286299-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G015360.1Lsi08G015360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 31..51
score: -coord: 152..172
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G015360Csa2G354630Cucumber (Chinese Long) v2culsiB142
Lsi08G015360CSPI02G18440Wild cucumber (PI 183967)cpilsiB141
Lsi08G015360Cucsa.395540Cucumber (Gy14) v1cgylsiB637
Lsi08G015360CmaCh05G001310Cucurbita maxima (Rimu)cmalsiB739
Lsi08G015360Cla022636Watermelon (97103) v1lsiwmB465
Lsi08G015360MELO3C010797Melon (DHL92) v3.5.1lsimeB469
Lsi08G015360ClCG08G016580Watermelon (Charleston Gray)lsiwcgB438
Lsi08G015360MELO3C010797.2Melon (DHL92) v3.6.1lsimedB489
Lsi08G015360Cla97C08G160280Watermelon (97103) v2lsiwmbB444
Lsi08G015360Bhi04G000404Wax gourdlsiwgoB591
Lsi08G015360Cp4.1LG11g01140Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G015360CsGy2G018350Cucumber (Gy14) v2cgyblsiB129
Lsi08G015360Carg11891Silver-seed gourdcarlsiB164
Lsi08G015360CsaV3_2G026030Cucumber (Chinese Long) v3cuclsiB155
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G015360Bottle gourd (USVL1VR-Ls)lsilsiB087
Lsi08G015360Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi08G015360Cucumber (Gy14) v1cgylsiB129
Lsi08G015360Cucumber (Gy14) v1cgylsiB370
Lsi08G015360Cucumber (Gy14) v1cgylsiB571
Lsi08G015360Cucurbita maxima (Rimu)cmalsiB032
Lsi08G015360Cucurbita maxima (Rimu)cmalsiB184
Lsi08G015360Cucurbita maxima (Rimu)cmalsiB456
Lsi08G015360Cucurbita maxima (Rimu)cmalsiB621
Lsi08G015360Cucurbita maxima (Rimu)cmalsiB809
Lsi08G015360Cucurbita moschata (Rifu)cmolsiB020
Lsi08G015360Cucurbita moschata (Rifu)cmolsiB175
Lsi08G015360Cucurbita moschata (Rifu)cmolsiB442
Lsi08G015360Cucurbita moschata (Rifu)cmolsiB609
Lsi08G015360Cucurbita moschata (Rifu)cmolsiB731
Lsi08G015360Cucurbita moschata (Rifu)cmolsiB795
Lsi08G015360Cucurbita pepo (Zucchini)cpelsiB067
Lsi08G015360Cucurbita pepo (Zucchini)cpelsiB409
Lsi08G015360Cucurbita pepo (Zucchini)cpelsiB477
Lsi08G015360Cucurbita pepo (Zucchini)cpelsiB644
Lsi08G015360Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G015360Wild cucumber (PI 183967)cpilsiB316
Lsi08G015360Wild cucumber (PI 183967)cpilsiB482
Lsi08G015360Wild cucumber (PI 183967)cpilsiB550
Lsi08G015360Cucumber (Chinese Long) v2culsiB317
Lsi08G015360Cucumber (Chinese Long) v2culsiB474
Lsi08G015360Cucumber (Chinese Long) v2culsiB535
Lsi08G015360Melon (DHL92) v3.5.1lsimeB466
Lsi08G015360Melon (DHL92) v3.5.1lsimeB488
Lsi08G015360Melon (DHL92) v3.5.1lsimeB490
Lsi08G015360Watermelon (Charleston Gray)lsiwcgB425
Lsi08G015360Watermelon (97103) v1lsiwmB488
Lsi08G015360Cucumber (Gy14) v2cgyblsiB289
Lsi08G015360Cucumber (Gy14) v2cgyblsiB441
Lsi08G015360Cucumber (Gy14) v2cgyblsiB505
Lsi08G015360Melon (DHL92) v3.6.1lsimedB507
Lsi08G015360Melon (DHL92) v3.6.1lsimedB509
Lsi08G015360Silver-seed gourdcarlsiB003
Lsi08G015360Silver-seed gourdcarlsiB295
Lsi08G015360Silver-seed gourdcarlsiB372
Lsi08G015360Silver-seed gourdcarlsiB415
Lsi08G015360Silver-seed gourdcarlsiB710
Lsi08G015360Cucumber (Chinese Long) v3cuclsiB336
Lsi08G015360Cucumber (Chinese Long) v3cuclsiB504
Lsi08G015360Cucumber (Chinese Long) v3cuclsiB573
Lsi08G015360Watermelon (97103) v2lsiwmbB422
Lsi08G015360Watermelon (97103) v2lsiwmbB435
Lsi08G015360Wax gourdlsiwgoB613
Lsi08G015360Wax gourdlsiwgoB627