Lsi08G009230 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G009230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Thioredoxin z
Location	chr08 : 17630763 .. 17633673 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTTTACAACCCCAAAAAACCCTTCAAATCACCTCCAATCTCTTCCCCATCTGTAATTTTAGCTCCTTTCGACCTTCCATTTCAATTCCTTTCTCATCCTCAAAAACCCATCATCAAAATGCGCTTCTTTCCTCTTCCAGCAGCAGAACCTTTTCACTCTCAACCACTCCAAGAAGGATTTTGTGCGAACCCCCTAAAGGAAAGTACATCCACGACGATTATCTTGTGGTACACTTACGTTTTCTTCTACCCCTTTTGCTTATTTTTTTTTGATTTTTGTCTATGAGTTTGTTATTGTTTTTGCTTGTCAATTGTTTTGGTGTGGGGTTTGCTTGCAGAAGAAGATGACATCTGCCGAAGTGCAGGAGTTGGTGAAGGGGGAAAGAAATGTGCCGCTTATAATTGATTTTTATGCAACATGGTGTGGACCCTGCATTCTAATGGCTCAAGAACTTGAAATGGTATGTCTAATTACATTGAATTTTGGTATGAATTCACATGTAAATGGTGATTCTTTGCCAGAGAGGTGTGTAAATGCTTCATTTTTATGTATGTATGGATCTATTAGCTTAAGGTTTTGGATTTAGTGGGGGTTAAAAATTATATCAGTATATCAGTAGCTCTTGAGTTCAAACTTTTACTCTATCATTTTCTCTTCTATTGATATTGATAATCATTGTTGAGTCTTGTGCCCATTAAACCTATAAGTTAGAGGGAGCTATATATGTATTTGTATAAGAGATCAAAGATACCGACTCATCTGGCTTTTGCTTTTGGGGTTAGTGTTAGTGGTAGAATTAATGTATGAATCTCATTTAATTGTAATTTCAAACTCAAAGCCTTATCTAGTATAGTTCACATTTCTCCTTTTAGTTTTGACGGGGATGTGCTTCCATATGGTTCTGGTGAAGAAGAAAATTTACATGATGTGTTGAGGCCAAAAGGCATTGATTAAGAACTTCAAGTTTTATATATATCTATATGAAAACTACCGCAGTTAGTTTGGCTTATTGTAGTATTCTTGTGATTTGGGCTATTCATTTACTTGGTTCTGTAACATAGTGGTTGGTGTCTTATGGTGGTCTGGCCATTGTATCTTTTGGTAGTATATTTACTCCCATCCTGCTGTCTTACAGTCTGTTGAGAGGGAAATTCCTTGTTCATACAATTAGTTGATCTTCGTTCCTGCTAATTCTCACAGGTGGAGAGTTAGTTTCTATTTGGAATAATTGGGGTAGTTGATTATTAAGCCTGCTTGTTGCAGAATCAAATCATTGTCTGTAGTCTTAATTTGTCACAAAAACTTGTGGTTTTAGTAGATGTGAGTGTTAAGCGATATTTACGTGCTTGTAATCACAAAGAAGGCTTGCCTTTTTCTGTGTGCATGTTTGTACTTTTCTTTGATCAAGACACTGTGAGATGACAAAGGAACTGAGAGGTCAATGCTGCATCTTGGTTGCATATGCATTTCATGCCCTGTAACATACTTGGATTGGCGATAAGATTGTAGTTCTTAACTTGCTTCAGCAAAGTTGGAATCGATTGGATAATTCTTTTGCATCTTTTTGTTTATTTATTTATTTGTAGTCACTGGATAAAAGTTGTGGTTTGCTCAAGCAAAATTCTTTATGGACCCACCAATCGTGAATACCAACCATGGGAAGGGTAAGAAGGGGATTTTTCAAAGGACAGTCAGTTAGCAGGACATCTTTGTAAGGAATGTGGGGAATAGGACAGTGTTACCAGTGAAAGCAATGTTTTGGGAGGGGATCATTGTTATTTTGGGAATTGTGATGTTATGGAGAGAGGTTACTAGCCCTCTCGAAAATTAGCTGGATATTTTATTGTGTTCTCAGCATATACTTTCCGTTGTCTCGTTGGTGATACTGTTCTAACGCTAGCATTGGAATATGTTTTGAACTTTAAGTGATTGTTCAGAATGTTTGTTATATCTTTTGCTCCAACTAAAGGAACACTACAATTTTCTGGGTTGTTCAGAAACATTACGATGATCTTTTAGACGTCATGTTGGTTCTATTTTGCTCTTTCAGGATTGCAATTACACCTTCTTCCAGTTTTAGTTCAGGTAGTTGATATTGTTATTGAAATGGCAATGAATATAAAGCTGCACTATTTCCTTGTGCTACTATTGTTTGCACGGTTGCGTTCGAGGTTTTACTATACTTGTACTATTGATTTTCGTTAATGAAGGCTTTGGTTTTACTATTAGATTTGTTATGGTCAACGTTCTCTTCAGCCCCTGCATCAATTGCCATAGTATTCAAAATTTGCATTGCTACATGGATCTGTTAATAATTGATGACTTGTAAAAAGAATTTGTTTGCTTAAAATGTTGACGCTCTAGTCAATTGCTCAGTTCATGGTATTATCTATATTAACTATGATCATAGATTAACATTTGGAGTCGTTGGATGAAGCTGTAAGTCTGTAACTGTAATGTGCTGTTACAACTCTTTTATTTTGGAAATCATGGATTTAGCTAACTTGTAGCTCTTATCGCAGCTTGCTGTAGAGTACGAGAACAATGCAATGATCATCAAGGTTGATACAGACGACGAATATGAATTTTCACGCGATATGCAGGTAAAAACACACCACTCCTTTCTCCCTAACCTATTCGCCTCGTCTCTATACTGCAATGTTGTCCTAACACAAAGCATTCTCATCTACACACCTTTTCGATTATCCGCAAAGTTGGTCGTGAAAGATAGTCTTTGTTCTTACCCATATCTCTGGAAAGGTGAATCTGAGTTAAATGCGGTTTCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACCGAAGGTCTCATTCCAATTCAGATGATGCGAGATATCATCGATAAAGAGATGTGA

mRNA sequence

ATGGCTCTTTTACAACCCCAAAAAACCCTTCAAATCACCTCCAATCTCTTCCCCATCTGTAATTTTAGCTCCTTTCGACCTTCCATTTCAATTCCTTTCTCATCCTCAAAAACCCATCATCAAAATGCGCTTCTTTCCTCTTCCAGCAGCAGAACCTTTTCACTCTCAACCACTCCAAGAAGGATTTTGTGCGAACCCCCTAAAGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACATCTGCCGAAGTGCAGGAGTTGGTGAAGGGGGAAAGAAATGTGCCGCTTATAATTGATTTTTATGCAACATGGTGTGGACCCTGCATTCTAATGGCTCAAGAACTTGAAATGGTATGTCTAATTACATTGAATTTTGGTATGAATTCACATCTTGCTGTAGAGTACGAGAACAATGCAATGATCATCAAGGTTGATACAGACGACGAATATGAATTTTCACGCGATATGCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACCGAAGGTCTCATTCCAATTCAGATGATGCGAGATATCATCGATAAAGAGATGTGA

Coding sequence (CDS)

ATGGCTCTTTTACAACCCCAAAAAACCCTTCAAATCACCTCCAATCTCTTCCCCATCTGTAATTTTAGCTCCTTTCGACCTTCCATTTCAATTCCTTTCTCATCCTCAAAAACCCATCATCAAAATGCGCTTCTTTCCTCTTCCAGCAGCAGAACCTTTTCACTCTCAACCACTCCAAGAAGGATTTTGTGCGAACCCCCTAAAGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACATCTGCCGAAGTGCAGGAGTTGGTGAAGGGGGAAAGAAATGTGCCGCTTATAATTGATTTTTATGCAACATGGTGTGGACCCTGCATTCTAATGGCTCAAGAACTTGAAATGGTATGTCTAATTACATTGAATTTTGGTATGAATTCACATCTTGCTGTAGAGTACGAGAACAATGCAATGATCATCAAGGTTGATACAGACGACGAATATGAATTTTCACGCGATATGCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACCGAAGGTCTCATTCCAATTCAGATGATGCGAGATATCATCGATAAAGAGATGTGA

Protein sequence

MALLQPQKTLQITSNLFPICNFSSFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM

Homology

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BLAST of Lsi08G009230 vs. Swiss-Prot
Match: CITRX_ARATH (Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=CITRX PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 119/207 (57.49%), Postives = 148/207 (71.50%), Query Frame = 1


Query: 1   MALLQPQKTLQITSNLFPICNFSSFRPS----------ISIPFSSSKTHHQNALLSSSSS 60
           MAL+Q +    + + L PI + S   PS          ++ PFSSS          ++ +
Sbjct: 1   MALVQSRTFPHLNTPLSPILS-SLHAPSSLFIRREIRPVAAPFSSS----------TAGN 60

Query: 61  RTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPC 120
             FS  T PR++LC PP+GK++ +DYLVKK+++ E+QELVKG+R VPLI+DFYATWCGPC
Sbjct: 61  LPFSPLTRPRKLLCPPPRGKFVREDYLVKKLSAQELQELVKGDRKVPLIVDFYATWCGPC 120

Query: 121 ILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFIS 180
           ILMAQELEM             LAVEYE+NA+I+KVDTDDEYEF+RDMQVRGLPTLFFIS
Sbjct: 121 ILMAQELEM-------------LAVEYESNAIIVKVDTDDEYEFARDMQVRGLPTLFFIS 180

Query: 181 PDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           PDP+K+AIRTEGLIP+QMM DIID EM
Sbjct: 181 PDPSKDAIRTEGLIPLQMMHDIIDNEM 183

[Close]

BLAST of Lsi08G009230 vs. Swiss-Prot
Match: CITRX_SOLLC (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum lycopersicum GN=CITRX PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-55
Identity = 111/168 (66.07%), Postives = 130/168 (77.38%), Query Frame = 1


Query: 34  SSSKTHHQNALLSSSSSRTFSLSTTP---RRILCEPPK-GKYIHDDYLVKKMTSAEVQEL 93
           SS   HH N  L   +  T +LS T    R  +C+PP  GKY+ +DYLVKK+++ E+QEL
Sbjct: 21  SSKLPHHLNYSLFKHAPSTSTLSLTQVLSRNTICKPPAVGKYVREDYLVKKLSAKEIQEL 80

Query: 94  VKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIKVDTD 153
           +KGERNVPLIIDFYATWCGPCILMAQELEM             LAVEYENNA+I+KVDTD
Sbjct: 81  IKGERNVPLIIDFYATWCGPCILMAQELEM-------------LAVEYENNALIVKVDTD 140

Query: 154 DEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           DEYEF+RDMQVRGLPTL+FISPD +K+AIRTEGLIPIQMMRDIID ++
Sbjct: 141 DEYEFARDMQVRGLPTLYFISPDSSKDAIRTEGLIPIQMMRDIIDNDL 175

[Close]

BLAST of Lsi08G009230 vs. Swiss-Prot
Match: CITRX_SOLTU (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum tuberosum GN=CITRX PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.5e-55
Identity = 111/169 (65.68%), Postives = 132/169 (78.11%), Query Frame = 1


Query: 33  FSSSKTHHQNALLSSSSSRTFSLSTTP---RRILCEPPK-GKYIHDDYLVKKMTSAEVQE 92
           FSS   HH N  L S +  T +LS T    R+ +C+P   GKY+ +DYLVKK+++ E+QE
Sbjct: 20  FSSKLPHHLNYSLFSHTPPTSTLSLTQTLSRKSICQPRAVGKYVREDYLVKKLSAKEIQE 79

Query: 93  LVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIKVDT 152
           L+KGERNVPLIIDFYATWCGPCILMAQELEM             LAVEYENNA+I+KVDT
Sbjct: 80  LIKGERNVPLIIDFYATWCGPCILMAQELEM-------------LAVEYENNALIVKVDT 139

Query: 153 DDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           DDEYEF+RDMQVRGLPTL+FISPD +K+AIRTEGLIPIQMMRDII+ ++
Sbjct: 140 DDEYEFARDMQVRGLPTLYFISPDSSKDAIRTEGLIPIQMMRDIINNDL 175

[Close]

BLAST of Lsi08G009230 vs. Swiss-Prot
Match: CITX2_NICBE (Thioredoxin-like protein CITRX2, chloroplastic OS=Nicotiana benthamiana GN=CITRX2 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-53
Identity = 114/189 (60.32%), Postives = 136/189 (71.96%), Query Frame = 1


Query: 24  SFRPSISIPFSSSKTHHQ----NALLSSSSSRT--------FSLSTTPRRILCEPPK--- 83
           SF+PS   P  +S  H      N L  S  S T         S  T  R+ +C+PP    
Sbjct: 7   SFQPSAP-PLQTSAFHFSSKQPNQLKYSLFSYTCPILKRSLLSTQTLSRKSICKPPDVAT 66

Query: 84  GKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFG 143
           GKY+ +DYLVKK+++ ++QEL+KGERNVPLIIDFYATWCGPCILMAQELEM         
Sbjct: 67  GKYVREDYLVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEM--------- 126

Query: 144 MNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQM 198
               LAVEYE+NA+I+KVDTDDEYEF+RDMQVRGLPTL+FISPDPNK+AIRTEGLIPIQM
Sbjct: 127 ----LAVEYESNALIVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQM 181

[Close]

BLAST of Lsi08G009230 vs. Swiss-Prot
Match: CITX1_NICBE (Thioredoxin-like protein CITRX1, chloroplastic OS=Nicotiana benthamiana GN=CITRX1 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.3e-53
Identity = 110/181 (60.77%), Postives = 136/181 (75.14%), Query Frame = 1


Query: 20  CNFSSFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPRRILCEPPK---GKYIHDDY 79
           C+FSS +P+       S   +   +L  S   T +LS   R+ +C+PP    GKY+ +DY
Sbjct: 20  CHFSSKQPN---QLKYSLFSYTCPILKRSLLSTQTLS---RKSICKPPAVATGKYVREDY 79

Query: 80  LVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVE 139
           LVKK+++ ++QEL+KGERNVPLIIDFYATWCGPCILMAQELEM             LAVE
Sbjct: 80  LVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEM-------------LAVE 139

Query: 140 YENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKE 198
           YE+NA+I+KVD DDEYEF+RDMQVRGLPTL+FISPDPNK+AIRTEGLIPIQMMRDII+ +
Sbjct: 140 YESNALIVKVDADDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINND 181

[Close]

BLAST of Lsi08G009230 vs. TrEMBL
Match: A0A0A0KH97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401380 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 5.2e-90
Identity = 173/197 (87.82%), Postives = 179/197 (90.86%), Query Frame = 1


Query: 1   MALLQPQKTLQITSNLFPICNFSSFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPR 60
           MA+LQPQKTLQ+TSNLFPICNF+S RPSISIPFSSSKTHHQ+ LLSSSS R FSLS TPR
Sbjct: 1   MAVLQPQKTLQVTSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSS-RPFSLSPTPR 60

Query: 61  RILCEPPKGKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMV 120
           RILCEPPKGKYIHDDYLVKKMT+AEVQELVKGERNVPLIIDFYATWCGPCILMAQELEM 
Sbjct: 61  RILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEM- 120

Query: 121 CLITLNFGMNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRT 180
                       LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRT
Sbjct: 121 ------------LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRT 180

Query: 181 EGLIPIQMMRDIIDKEM 198
           EGLIPIQMMRDIID+EM
Sbjct: 181 EGLIPIQMMRDIIDREM 183

[Close]

BLAST of Lsi08G009230 vs. TrEMBL
Match: A0A0B0P7W0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_01634 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 122/172 (70.93%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 27  PSISIPFSSSKTHHQNALLSSSSS-RTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTSAE 86
           PS+S    SSKTH QN+L  S++  R FSLST PR++LC+PP GKY+ +DYLVKKM+S E
Sbjct: 14  PSLSPIVFSSKTHSQNSLFFSTTKVRPFSLSTQPRKLLCKPPLGKYVREDYLVKKMSSQE 73

Query: 87  VQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIK 146
           ++ELV+GER VP+IIDFYATWCGPCILMAQELEM             LAVEYE NA+I+K
Sbjct: 74  IEELVRGERRVPIIIDFYATWCGPCILMAQELEM-------------LAVEYEKNAIIVK 133

Query: 147 VDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           VDTDDEY+F++DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDI+D EM
Sbjct: 134 VDTDDEYQFAQDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDILDNEM 172

[Close]

BLAST of Lsi08G009230 vs. TrEMBL
Match: B9GLZ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06590g PE=4 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 122/177 (68.93%), Postives = 142/177 (80.23%), Query Frame = 1


Query: 24  SFRPSISIPFSSSKTHHQNALLS---SSSSRTFSLSTTPRRILCEPPKGKYIHDDYLVKK 83
           SF P  S P SS KTH +++L S   +   R FSLST  RR+LC PP+GKYI +DYLVKK
Sbjct: 22  SFLPLFSSPQSSFKTHQESSLFSITRTPKKRPFSLSTQQRRLLCRPPQGKYIREDYLVKK 81

Query: 84  MTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENN 143
           +++ E+QELVKGERNVPL+IDFYATWCGPC+LMAQELEM             LAVEYE+N
Sbjct: 82  LSAEEIQELVKGERNVPLVIDFYATWCGPCVLMAQELEM-------------LAVEYESN 141

Query: 144 AMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
            MI+KVDTDDEYEF++DMQVRGLPTLFFISPDPNK+AIRTEGLIP+QMMRDII+ EM
Sbjct: 142 VMIVKVDTDDEYEFAQDMQVRGLPTLFFISPDPNKDAIRTEGLIPLQMMRDIINNEM 185

[Close]

BLAST of Lsi08G009230 vs. TrEMBL
Match: A0A067L8W2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24543 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.6e-61
Identity = 126/201 (62.69%), Postives = 152/201 (75.62%), Query Frame = 1


Query: 1   MALLQPQKTL-QITSNLFPICNFSSFRPSISIPFSSSKTHHQNALLSSSSS---RTFSLS 60
           MA LQP  T  ++T+        +    S+S P  S KT  +N+L S++++   R FSLS
Sbjct: 1   MARLQPYTTTHKVTTFSSTFALLAPPLSSLSFPLCSLKTQKENSLFSTTNTTRKRPFSLS 60

Query: 61  TTPRRILCEPPKGKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQE 120
           T PRR+LC PP GKY+ +DYLVKK ++ E+QELV+GERNVP+IIDFYATWCGPCILMAQE
Sbjct: 61  TQPRRLLCRPPLGKYVREDYLVKKKSAQEIQELVRGERNVPIIIDFYATWCGPCILMAQE 120

Query: 121 LEMVCLITLNFGMNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKE 180
           LEM             LAVEYE+NA+I+KVDTD+EYEF+ DMQVRGLPTLFFISPDP K+
Sbjct: 121 LEM-------------LAVEYESNAIIVKVDTDEEYEFAHDMQVRGLPTLFFISPDPKKD 180

Query: 181 AIRTEGLIPIQMMRDIIDKEM 198
           AIRTEGLIPIQMMRDIIDK+M
Sbjct: 181 AIRTEGLIPIQMMRDIIDKDM 188

[Close]

BLAST of Lsi08G009230 vs. TrEMBL
Match: A0A0D2TBP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G216600 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-60
Identity = 120/172 (69.77%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 27  PSISIPFSSSKTHHQNALLSSSSS-RTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTSAE 86
           PS+S   SSSK H QN+L  S++  R FSLST PR++LC+PP GKY+ +DYLVKKM+S E
Sbjct: 14  PSLSPIVSSSKIHSQNSLFFSTTKVRPFSLSTQPRKLLCKPPLGKYVREDYLVKKMSSQE 73

Query: 87  VQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIK 146
           ++ELV+GER VP+IIDFYATWCGPCILMAQELEM             LAVEYE NA+I+K
Sbjct: 74  IEELVRGERRVPIIIDFYATWCGPCILMAQELEM-------------LAVEYEKNAIIVK 133

Query: 147 VDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           VDTD+E++F++DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDI+D EM
Sbjct: 134 VDTDEEHQFAQDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDILDNEM 172

[Close]

BLAST of Lsi08G009230 vs. TAIR10
Match: AT3G06730.1 (AT3G06730.1 Thioredoxin z)

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-58
Identity = 119/207 (57.49%), Postives = 148/207 (71.50%), Query Frame = 1


Query: 1   MALLQPQKTLQITSNLFPICNFSSFRPS----------ISIPFSSSKTHHQNALLSSSSS 60
           MAL+Q +    + + L PI + S   PS          ++ PFSSS          ++ +
Sbjct: 1   MALVQSRTFPHLNTPLSPILS-SLHAPSSLFIRREIRPVAAPFSSS----------TAGN 60

Query: 61  RTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPC 120
             FS  T PR++LC PP+GK++ +DYLVKK+++ E+QELVKG+R VPLI+DFYATWCGPC
Sbjct: 61  LPFSPLTRPRKLLCPPPRGKFVREDYLVKKLSAQELQELVKGDRKVPLIVDFYATWCGPC 120

Query: 121 ILMAQELEMVCLITLNFGMNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFIS 180
           ILMAQELEM             LAVEYE+NA+I+KVDTDDEYEF+RDMQVRGLPTLFFIS
Sbjct: 121 ILMAQELEM-------------LAVEYESNAIIVKVDTDDEYEFARDMQVRGLPTLFFIS 180

Query: 181 PDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           PDP+K+AIRTEGLIP+QMM DIID EM
Sbjct: 181 PDPSKDAIRTEGLIPLQMMHDIIDNEM 183

[Close]

BLAST of Lsi08G009230 vs. TAIR10
Match: AT1G43560.1 (AT1G43560.1 thioredoxin Y2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 33/119 (27.73%), Postives = 56/119 (47.06%), Query Frame = 1


Query: 79  KKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYE 138
           KK T     +L++   + P+++DFYATWCGPC LM   L             + ++   +
Sbjct: 61  KKQTFNSFDDLLQNS-DKPVLVDFYATWCGPCQLMVPIL-------------NEVSETLK 120

Query: 139 NNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           +   ++K+DT+     +   Q+  LPT  FI     K   R EG +P   + + I+  +
Sbjct: 121 DIIAVVKIDTEKYPSLANKYQIEALPT--FILFKDGKLWDRFEGALPANQLVERIENSL 163

[Close]

BLAST of Lsi08G009230 vs. TAIR10
Match: AT1G50320.1 (AT1G50320.1 thioredoxin X)

HSP 1 Score: 51.2 bits (121), Expect = 8.4e-07
Identity = 44/171 (25.73%), Postives = 71/171 (41.52%), Query Frame = 1


Query: 24  SFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTS 83
           S +P  S+  +S   +     LSS + RT   S++  R  C             +K++  
Sbjct: 30  SVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSVIR--CGG-----------IKEIGE 89

Query: 84  AEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENNAMI 143
           +E    V  E   P++++F ATWCGPC L+   +E              L+ EY +   I
Sbjct: 90  SEFSSTVL-ESAQPVLVEFVATWCGPCKLIYPAMEA-------------LSQEYGDKLTI 149

Query: 144 IKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 195
           +K+D D   +   + +V GLP              R EG I    +++ ID
Sbjct: 150 VKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYID 173

[Close]

BLAST of Lsi08G009230 vs. NCBI nr
Match: gi|449458067|ref|XP_004146769.1| (PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 7.4e-90
Identity = 173/197 (87.82%), Postives = 179/197 (90.86%), Query Frame = 1


Query: 1   MALLQPQKTLQITSNLFPICNFSSFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPR 60
           MA+LQPQKTLQ+TSNLFPICNF+S RPSISIPFSSSKTHHQ+ LLSSSS R FSLS TPR
Sbjct: 1   MAVLQPQKTLQVTSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSS-RPFSLSPTPR 60

Query: 61  RILCEPPKGKYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMV 120
           RILCEPPKGKYIHDDYLVKKMT+AEVQELVKGERNVPLIIDFYATWCGPCILMAQELEM 
Sbjct: 61  RILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEM- 120

Query: 121 CLITLNFGMNSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRT 180
                       LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRT
Sbjct: 121 ------------LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRT 180

Query: 181 EGLIPIQMMRDIIDKEM 198
           EGLIPIQMMRDIID+EM
Sbjct: 181 EGLIPIQMMRDIIDREM 183

[Close]

BLAST of Lsi08G009230 vs. NCBI nr
Match: gi|659089253|ref|XP_008445409.1| (PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.7e-84
Identity = 165/188 (87.77%), Postives = 169/188 (89.89%), Query Frame = 1


Query: 10  LQITSNLFPICNFSSFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPRRILCEPPKG 69
           LQI+SNLFPICNF+S RPSISIPFSSSKTHHQ+ LLSSSS R FSLSTTPRRILCEPPKG
Sbjct: 4   LQISSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSS-RPFSLSTTPRRILCEPPKG 63

Query: 70  KYIHDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGM 129
           KYIHDDYLVKKMT+AEVQELVK ERNVPLIIDFYATWCGPCILMAQELEM          
Sbjct: 64  KYIHDDYLVKKMTAAEVQELVKRERNVPLIIDFYATWCGPCILMAQELEM---------- 123

Query: 130 NSHLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMM 189
              LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMM
Sbjct: 124 ---LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMM 177

Query: 190 RDIIDKEM 198
           RDIID EM
Sbjct: 184 RDIIDNEM 177

[Close]

BLAST of Lsi08G009230 vs. NCBI nr
Match: gi|1012264807|ref|XP_015947088.1| (PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Arachis duranensis])

HSP 1 Score: 247.3 bits (630), Expect = 2.3e-62
Identity = 127/185 (68.65%), Postives = 144/185 (77.84%), Query Frame = 1


Query: 13  TSNLFPICNFSSFRPSISIPFSSSKTHHQNALLSSSSSRTFSLSTTPRRILCEPPKGKYI 72
           T  L PI  FSS     S PFS S  ++ N   S+ ++  FSLST PR+ LC PPKGKY+
Sbjct: 12  TLTLSPISFFSSN----SKPFSVSLRNNNNPTFSTRTNSPFSLSTMPRKFLCNPPKGKYV 71

Query: 73  HDDYLVKKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSH 132
            +DYLVKK+++ E+QELVKGERNVPLIIDFYATWCGPCILMAQELEM             
Sbjct: 72  REDYLVKKLSAMEIQELVKGERNVPLIIDFYATWCGPCILMAQELEM------------- 131

Query: 133 LAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDI 192
           LAVEYE NAMI+KVDTDDEYEF+RDMQVRGLPT+FFISPDPNK+AIRTEGL+PIQMMRDI
Sbjct: 132 LAVEYEKNAMIVKVDTDDEYEFARDMQVRGLPTVFFISPDPNKDAIRTEGLVPIQMMRDI 179

Query: 193 IDKEM 198
           ID EM
Sbjct: 192 IDNEM 179

[Close]

BLAST of Lsi08G009230 vs. NCBI nr
Match: gi|1000979733|ref|XP_015570810.1| (PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Ricinus communis])

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-62
Identity = 128/179 (71.51%), Postives = 144/179 (80.45%), Query Frame = 1


Query: 23  SSFRPSISIPFSSSKTHHQNALLS---SSSSRTFSLSTT-PRRILCEPPKGKYIHDDYLV 82
           SSF  S S P SS KTH + +L S   ++ S  FS STT PRR+LC PP GKY+ +DYLV
Sbjct: 24  SSFLSSSSFPLSSLKTHQEISLFSRTNTTKSTPFSPSTTHPRRLLCRPPNGKYVREDYLV 83

Query: 83  KKMTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYE 142
           KK ++ E+QELV+GERNVPLIIDFYATWCGPCILMAQELEM             LAVEYE
Sbjct: 84  KKKSAQEIQELVRGERNVPLIIDFYATWCGPCILMAQELEM-------------LAVEYE 143

Query: 143 NNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
           +NAMI+KVDTDDEYEF+RDMQVRGLPT+FFISPDPNK+AIRTEGLIPIQMMRDIIDKEM
Sbjct: 144 SNAMIVKVDTDDEYEFARDMQVRGLPTVFFISPDPNKDAIRTEGLIPIQMMRDIIDKEM 189

[Close]

BLAST of Lsi08G009230 vs. NCBI nr
Match: gi|743913353|ref|XP_011000584.1| (PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Populus euphratica])

HSP 1 Score: 245.4 bits (625), Expect = 8.6e-62
Identity = 123/177 (69.49%), Postives = 143/177 (80.79%), Query Frame = 1


Query: 24  SFRPSISIPFSSSKTHHQNALLSSSSS---RTFSLSTTPRRILCEPPKGKYIHDDYLVKK 83
           SF P  S P SS KTH +N+L S +S+   R FSLST  RR+LC PP+GKYI +DYLVKK
Sbjct: 22  SFLPLFSSPQSSFKTHQENSLFSITSTPKKRHFSLSTQQRRLLCRPPQGKYIREDYLVKK 81

Query: 84  MTSAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMVCLITLNFGMNSHLAVEYENN 143
           +++ E+QELVKGER VPL+IDFYATWCGPC+LMAQELEM             LAVEYE+N
Sbjct: 82  LSAEEIQELVKGERKVPLVIDFYATWCGPCVLMAQELEM-------------LAVEYESN 141

Query: 144 AMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 198
            MI+KVDTDDEYEF++DMQVRGLPTLFFISPDPNK+AIRTEGLIP+QMMRDII+ EM
Sbjct: 142 VMIVKVDTDDEYEFAQDMQVRGLPTLFFISPDPNKDAIRTEGLIPLQMMRDIINNEM 185

The following BLAST results are available for this feature:

BLAST of Lsi08G009230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CITRX_ARATH	3.7e-57	57.49	Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=CITRX P...	[more]
CITRX_SOLLC	1.2e-55	66.07	Thioredoxin-like protein CITRX, chloroplastic OS=Solanum lycopersicum GN=CITRX P...	[more]
CITRX_SOLTU	3.5e-55	65.68	Thioredoxin-like protein CITRX, chloroplastic OS=Solanum tuberosum GN=CITRX PE=3...	[more]
CITX2_NICBE	1.5e-53	60.32	Thioredoxin-like protein CITRX2, chloroplastic OS=Nicotiana benthamiana GN=CITRX...	[more]
CITX1_NICBE	3.3e-53	60.77	Thioredoxin-like protein CITRX1, chloroplastic OS=Nicotiana benthamiana GN=CITRX...	[more]

BLAST of Lsi08G009230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH97_CUCSA	5.2e-90	87.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401380 PE=4 SV=1	[more]
A0A0B0P7W0_GOSAR	1.0e-61	70.93	Uncharacterized protein OS=Gossypium arboreum GN=F383_01634 PE=4 SV=1	[more]
B9GLZ3_POPTR	1.0e-61	68.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06590g PE=4 SV=2	[more]
A0A067L8W2_JATCU	8.6e-61	62.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24543 PE=4 SV=1	[more]
A0A0D2TBP7_GOSRA	1.1e-60	69.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G216600 PE=4 SV=1	[more]

BLAST of Lsi08G009230 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06730.1	2.1e-58	57.49	Thioredoxin z	[more]
AT1G43560.1	1.3e-07	27.73	thioredoxin Y2	[more]
AT1G50320.1	8.4e-07	25.73	thioredoxin X	[more]

BLAST of Lsi08G009230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458067\|ref\|XP_004146769.1\|	7.4e-90	87.82	PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Cucumis sativus]	[more]
gi\|659089253\|ref\|XP_008445409.1\|	2.7e-84	87.77	PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Cucumis melo]	[more]
gi\|1012264807\|ref\|XP_015947088.1\|	2.3e-62	68.65	PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Arachis duranensis]	[more]
gi\|1000979733\|ref\|XP_015570810.1\|	2.9e-62	71.51	PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Ricinus communis]	[more]
gi\|743913353\|ref\|XP_011000584.1\|	8.6e-62	69.49	PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0045454	cell redox homeostasis
GO:0006662	glycerol ether metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR013766	Thioredoxin_domain
IPR012336	Thioredoxin-like_fold
IPR005746	Thioredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0009657	plastid organization
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0006364	rRNA processing
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0000103	sulfate assimilation
biological_process	GO:0006457	protein folding
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006662	glycerol ether metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0047134	protein-disulfide reductase activity
molecular_function	GO:0004791	thioredoxin-disulfide reductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G009230.1	Lsi08G009230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 11..197 score: 3.6
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 78..194 score: 9.2
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 77..195 score: 1.22
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 78..177 score: 2.3
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 44..197 score: 11
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 159..170 score: 5.8E-5coord: 98..106 score: 5.8E-5coord: 106..115 score: 5.
None	No IPR available	PANTHER	PTHR10438:SF276	THIOREDOXIN-LIKE PROTEIN CITRX, CHLOROPLASTIC	coord: 11..197 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G009230	Csa6G401380	Cucumber (Chinese Long) v2	culsiB482
Lsi08G009230	CSPI06G20820	Wild cucumber (PI 183967)	cpilsiB491
Lsi08G009230	Cucsa.005170	Cucumber (Gy14) v1	cgylsiB055
Lsi08G009230	CmaCh12G001230	Cucurbita maxima (Rimu)	cmalsiB185
Lsi08G009230	CmoCh12G001000	Cucurbita moschata (Rifu)	cmolsiB176
Lsi08G009230	Cla022051	Watermelon (97103) v1	lsiwmB465
Lsi08G009230	MELO3C011393	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G009230	ClCG08G010680	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G009230	MELO3C011393.2	Melon (DHL92) v3.6.1	lsimedB490
Lsi08G009230	Cla97C08G153560	Watermelon (97103) v2	lsiwmbB444
Lsi08G009230	Bhi04G000946	Wax gourd	lsiwgoB596
Lsi08G009230	Cp4.1LG07g00970	Cucurbita pepo (Zucchini)	cpelsiB686
Lsi08G009230	CsGy6G020160	Cucumber (Gy14) v2	cgyblsiB448
Lsi08G009230	Carg20565	Silver-seed gourd	carlsiB593
Lsi08G009230	CsaV3_6G035850	Cucumber (Chinese Long) v3	cuclsiB513

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G009230	Cucurbita maxima (Rimu)	cmalsiB737
Lsi08G009230	Cucurbita moschata (Rifu)	cmolsiB728
Lsi08G009230	Cucurbita pepo (Zucchini)	cpelsiB098
Lsi08G009230	Silver-seed gourd	carlsiB129