Lsi08G008500 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G008500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAnkyrin repeat family protein
Locationchr08 : 16924109 .. 16924672 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAAGGTGGAAGAAGAATCAGTACTTTCAATAGAAACTGATCAAACTGTAAATGAAAAGGATAAAGAAGATGAGAAGAAGAAGAAGAAGAAGAATGAAGATGAAGGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAACCCTCCCGGTGGCGTATGGCAAGACGACAACAACAAACCCGACTACGAAGCAGGCAAATCCATAATGGCTACAAAATCTCCTTCTCAATTCATCAGTTTCATGAGCGGCGTTACGCTATGCTTTGCGTGCTCAGTAATGCAGTTTATGGTGTTGTTGGTTAAGTCATCTGCTAAAACGTGGTCGGTTTCTAAGAGTTTTCTTTACTTCACAATGGGCTCTGCAATATCATCCATGATTGTTGCTTATTGGTCCGCCATAAAAGCTTTGACGCCTGACGCTCAAATGTCTAGTGTCATTGTTATGCTCAAAACTACCCTTGTTCTTAGCATTGTTTTGCTGCCAATTTCAATGTATATAGAGAAGAGACGACTTGCATCTCGTTAG

mRNA sequence

ATGACAAGAAAGGTGGAAGAAGAATCAGTACTTTCAATAGAAACTGATCAAACTGTAAATGAAAAGGATAAAGAAGATGAGAAGAAGAAGAAGAAGAAGAATGAAGATGAAGGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAACCCTCCCGGTGGCGTATGGCAAGACGACAACAACAAACCCGACTACGAAGCAGGCAAATCCATAATGGCTACAAAATCTCCTTCTCAATTCATCAGTTTCATGAGCGGCGTTACGCTATGCTTTGCGTGCTCAGTAATGCAGTTTATGGTGTTGTTGGTTAAGTCATCTGCTAAAACGTGGTCGGTTTCTAAGAGTTTTCTTTACTTCACAATGGGCTCTGCAATATCATCCATGATTGTTGCTTATTGGTCCGCCATAAAAGCTTTGACGCCTGACGCTCAAATGTCTAGTGTCATTGTTATGCTCAAAACTACCCTTGTTCTTAGCATTGTTTTGCTGCCAATTTCAATGTATATAGAGAAGAGACGACTTGCATCTCGTTAG

Coding sequence (CDS)

ATGACAAGAAAGGTGGAAGAAGAATCAGTACTTTCAATAGAAACTGATCAAACTGTAAATGAAAAGGATAAAGAAGATGAGAAGAAGAAGAAGAAGAAGAATGAAGATGAAGGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAACCCTCCCGGTGGCGTATGGCAAGACGACAACAACAAACCCGACTACGAAGCAGGCAAATCCATAATGGCTACAAAATCTCCTTCTCAATTCATCAGTTTCATGAGCGGCGTTACGCTATGCTTTGCGTGCTCAGTAATGCAGTTTATGGTGTTGTTGGTTAAGTCATCTGCTAAAACGTGGTCGGTTTCTAAGAGTTTTCTTTACTTCACAATGGGCTCTGCAATATCATCCATGATTGTTGCTTATTGGTCCGCCATAAAAGCTTTGACGCCTGACGCTCAAATGTCTAGTGTCATTGTTATGCTCAAAACTACCCTTGTTCTTAGCATTGTTTTGCTGCCAATTTCAATGTATATAGAGAAGAGACGACTTGCATCTCGTTAG

Protein sequence

MTRKVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPGGVWQDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKSSAKTWSVSKSFLYFTMGSAISSMIVAYWSAIKALTPDAQMSSVIVMLKTTLVLSIVLLPISMYIEKRRLASR
BLAST of Lsi08G008500 vs. TrEMBL
Match: A0A0A0KGU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 83/170 (48.82%), Postives = 107/170 (62.94%), Query Frame = 1

Query: 15  TDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPGGVWQDDNNKPD 74
           T  T ++   E  K     N    D DFLMV TTFIA +AFQ GTNPPGGVWQ+D+ +  
Sbjct: 15  TIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGK 74

Query: 75  YEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKS---SAKTWSVSKSFLYFTM 134
           Y AGKSIMATKSPS FI F+  +T CF  S MQF VL +K     AK WS S+  LY TM
Sbjct: 75  YFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFILYSTM 134

Query: 135 GSAISSMIVAYWSAIKALTPDAQMSSV-IVMLKTTLVLSIVLLPISMYIE 181
           G A+SSM  AY  +++A TPD++ +++ ++   T L   I L  IS+Y++
Sbjct: 135 GLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLGFPISLAAISIYLQ 184

BLAST of Lsi08G008500 vs. TrEMBL
Match: A0A0A0KIL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 80/173 (46.24%), Postives = 117/173 (67.63%), Query Frame = 1

Query: 4   KVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPG 63
           K EE +V+SI+T  + N+KD+E++     K    GD DF+MV  TFIAA+AFQ G NPPG
Sbjct: 7   KNEEATVVSIDT-ASENKKDREEKNSGWMK---PGDVDFVMVVVTFIAAVAFQVGINPPG 66

Query: 64  GVWQDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKSSAKTWSVS 123
            VWQ+D N   + AGKSIMA+KSPS++  FM+GVTLC   S++Q  V+L +   K++SV 
Sbjct: 67  SVWQEDKN--GFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 126

Query: 124 KSFLYFTMGSAISSMIVAYWSAIKALTPDAQ-MSSVIVMLKTTLVLSIVLLPI 176
           +  +Y  M   I+ MIV++W+++KALTPD + MS +   + + L + ++ LPI
Sbjct: 127 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPI 173

BLAST of Lsi08G008500 vs. TrEMBL
Match: A0A0A0KFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.3e-21
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 1

Query: 1   MTRKVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTN 60
           M  +VEE+     ET     E     EK  +K      D + LMV  TFI  ++FQAGTN
Sbjct: 1   MASRVEEDQ----ETATIAAENQTSSEKTLQK-----ADIELLMVIITFIGTISFQAGTN 60

Query: 61  PPGGVWQDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKSSAKTW 120
           PPGGVWQ+       EAGKSIMA+K+PSQF+ F+ GVT+    S  Q + L+ +      
Sbjct: 61  PPGGVWQEGP-----EAGKSIMASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKL 120

Query: 121 SVSKSFLYFTMGSAISSMIVAYWSAIKALTPDAQMSSVIVMLKTTLVLSIVLLPISMYIE 180
           S S++F+Y ++G  I+++  AYWS++ ALTP + +  V ++L T L + +V++ I +YI+
Sbjct: 121 SDSRNFIYCSLGITITALGFAYWSSLTALTPSSMILEVRIVLITELSIGVVIVAIIVYIQ 173

Query: 181 KRRLASR 188
           K+ + S+
Sbjct: 181 KKDVCSK 173

BLAST of Lsi08G008500 vs. TrEMBL
Match: A0A0A0KDK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363540 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-16
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1

Query: 1  MTRKVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTN 60
          M+R+V ++SVL IETDQT+N KDKE+  +KKK    E DRDFLMVATTFIAAMAFQAGTN
Sbjct: 1  MSREVADDSVLPIETDQTINVKDKEN--RKKKNEGGERDRDFLMVATTFIAAMAFQAGTN 60

Query: 61 PPGGVWQD 69
          PPGGVWQ+
Sbjct: 61 PPGGVWQE 66

BLAST of Lsi08G008500 vs. TrEMBL
Match: B9HDA6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24010g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1

Query: 31  KKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPGGVWQDDNNKP---DYEAGKSIMATKSP 90
           +KKN  E  R+ LMV  + IA MAFQAG +PP G WQ+D  +P    +EAG+SIMA K P
Sbjct: 311 RKKNWLEERRNALMVVASLIATMAFQAGISPPNGNWQEDRQQPPSQSHEAGRSIMADKMP 370

Query: 91  SQFISFMSGVTLCFACSVMQFMVLLVKSSAKTWSVSKSFLYFTMGSAISSMIVAYWSAIK 150
             F  F+   T  F  S+   ++LL+      W +    L   M  A+ + I  Y+ +I 
Sbjct: 371 DDFAFFVGYNTTSFLASI-SVIILLISGLPFKWRIFTWILMIIMWIAVIATIWTYYISIS 430

BLAST of Lsi08G008500 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 86/178 (48.31%), Postives = 112/178 (62.92%), Query Frame = 1

Query: 7   EESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPGGVW 66
           E   ++I+T +T +EK+K         N    D DFLMV TTFIA +AFQ GTNPPGGVW
Sbjct: 9   ESVAITIDTTETGHEKNK----MMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPPGGVW 68

Query: 67  QDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKS---SAKTWSVS 126
           Q+D+ +  Y AGKSIMATKSPS F  ++  +T CF  S MQF VL +K     AK WS S
Sbjct: 69  QEDDKQGKYFAGKSIMATKSPSDFSGYLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFS 128

Query: 127 KSFLYFTMGSAISSMIVAYWSAIKALTPDA-QMSSVIVMLKTTLVLSIVLLPISMYIE 181
           +  LY TMG AISSM +AY  +++A TPD+ + +  ++   T L   I L  IS+Y+E
Sbjct: 129 RFILYSTMGLAISSMGIAYGCSVRAYTPDSEEKTRYVISFITMLGFPIGLAAISLYLE 182

BLAST of Lsi08G008500 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 83/170 (48.82%), Postives = 107/170 (62.94%), Query Frame = 1

Query: 15  TDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPGGVWQDDNNKPD 74
           T  T ++   E  K     N    D DFLMV TTFIA +AFQ GTNPPGGVWQ+D+ +  
Sbjct: 15  TIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQEDDKQGK 74

Query: 75  YEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKS---SAKTWSVSKSFLYFTM 134
           Y AGKSIMATKSPS FI F+  +T CF  S MQF VL +K     AK WS S+  LY TM
Sbjct: 75  YFAGKSIMATKSPSDFIGFLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFILYSTM 134

Query: 135 GSAISSMIVAYWSAIKALTPDAQMSSV-IVMLKTTLVLSIVLLPISMYIE 181
           G A+SSM  AY  +++A TPD++ +++ ++   T L   I L  IS+Y++
Sbjct: 135 GLAVSSMGFAYGCSVRAYTPDSEENTLFVISFITMLGFPISLAAISIYLQ 184

BLAST of Lsi08G008500 vs. NCBI nr
Match: gi|449452915|ref|XP_004144204.1| (PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 7.2e-26
Identity = 80/173 (46.24%), Postives = 117/173 (67.63%), Query Frame = 1

Query: 4   KVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPG 63
           K EE +V+SI+T  + N+KD+E++     K    GD DF+MV  TFIAA+AFQ G NPPG
Sbjct: 7   KNEEATVVSIDT-ASENKKDREEKNSGWMK---PGDVDFVMVVVTFIAAVAFQVGINPPG 66

Query: 64  GVWQDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKSSAKTWSVS 123
            VWQ+D N   + AGKSIMA+KSPS++  FM+GVTLC   S++Q  V+L +   K++SV 
Sbjct: 67  SVWQEDKN--GFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 126

Query: 124 KSFLYFTMGSAISSMIVAYWSAIKALTPDAQ-MSSVIVMLKTTLVLSIVLLPI 176
           +  +Y  M   I+ MIV++W+++KALTPD + MS +   + + L + ++ LPI
Sbjct: 127 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPI 173

BLAST of Lsi08G008500 vs. NCBI nr
Match: gi|659089463|ref|XP_008445521.1| (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 80/184 (43.48%), Postives = 122/184 (66.30%), Query Frame = 1

Query: 4   KVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTNPPG 63
           K EE +V++I+T+ T N KD E+      +    GD DF+M+  TFIAA+AFQ GTNPPG
Sbjct: 7   KNEEATVVAIDTE-TENRKDGEEMNSGWMR---PGDVDFVMIVVTFIAAVAFQVGTNPPG 66

Query: 64  GVWQDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKSSAKTWSVS 123
            VWQ+D N   + AGKSIMA+KSPS++  FM+GVTLC + S++Q  V+L +   KT+SV 
Sbjct: 67  SVWQEDKN--GFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVR 126

Query: 124 KSFLYFTMGSAISSMIVAYWSAIKALTPDAQ-MSSVIVMLKTTLVLSIVLLPISM--YIE 183
           +  +Y  M   I+ MI ++W+++KALTPD + MS +   + ++  + ++ LP+ +  Y+ 
Sbjct: 127 RMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLL 184

Query: 184 KRRL 185
           K+ L
Sbjct: 187 KKFL 184

BLAST of Lsi08G008500 vs. NCBI nr
Match: gi|449452917|ref|XP_004144205.1| (PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 1

Query: 1   MTRKVEEESVLSIETDQTVNEKDKEDEKKKKKKNEDEGDRDFLMVATTFIAAMAFQAGTN 60
           M  +VEE+     ET     E     EK  +K      D + LMV  TFI  ++FQAGTN
Sbjct: 1   MASRVEEDQ----ETATIAAENQTSSEKTLQK-----ADIELLMVIITFIGTISFQAGTN 60

Query: 61  PPGGVWQDDNNKPDYEAGKSIMATKSPSQFISFMSGVTLCFACSVMQFMVLLVKSSAKTW 120
           PPGGVWQ+       EAGKSIMA+K+PSQF+ F+ GVT+    S  Q + L+ +      
Sbjct: 61  PPGGVWQEGP-----EAGKSIMASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKL 120

Query: 121 SVSKSFLYFTMGSAISSMIVAYWSAIKALTPDAQMSSVIVMLKTTLVLSIVLLPISMYIE 180
           S S++F+Y ++G  I+++  AYWS++ ALTP + +  V ++L T L + +V++ I +YI+
Sbjct: 121 SDSRNFIYCSLGITITALGFAYWSSLTALTPSSMILEVRIVLITELSIGVVIVAIIVYIQ 173

Query: 181 KRRLASR 188
           K+ + S+
Sbjct: 181 KKDVCSK 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGU1_CUCSA3.1e-2848.82Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363530 PE=4 SV=1[more]
A0A0A0KIL3_CUCSA5.0e-2646.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363520 PE=4 SV=1[more]
A0A0A0KFJ5_CUCSA8.3e-2139.57Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363010 PE=4 SV=1[more]
A0A0A0KDK4_CUCSA6.1e-1673.53Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363540 PE=4 SV=1[more]
B9HDA6_POPTR1.5e-0938.21Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24010g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659089597|ref|XP_008445596.1|1.5e-2848.31PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo][more]
gi|778715279|ref|XP_011657373.1|4.5e-2848.82PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus][more]
gi|449452915|ref|XP_004144204.1|7.2e-2646.24PREDICTED: uncharacterized protein LOC101208403 [Cucumis sativus][more]
gi|659089463|ref|XP_008445521.1|1.0e-2443.48PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo][more]
gi|449452917|ref|XP_004144205.1|1.2e-2039.57PREDICTED: uncharacterized protein LOC101208645 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G008500.1Lsi08G008500.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 39..146
score: 1.6
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 1..187
score: 3.5
NoneNo IPR availablePANTHERPTHR24177:SF17SUBFAMILY NOT NAMEDcoord: 1..187
score: 3.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G008500Csa6G363540Cucumber (Chinese Long) v2culsiB470
The following gene(s) are paralogous to this gene:

None