Csa6G363540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G363540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR026961 (PGG domain)
Location	Chr6 : 16426714 .. 16427225 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGAGAAGTAGCAGATGACTCAGTACTTCCAATAGAAACTGATCAAACTATAAATGTTAAGGATAAAGAAAATCGAAAGAAGAAGAATGAAGGAGGAGAAAGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAATCCTCCAGGCGGCGTATGGCAAGAACGACAGCAACCCGAACTACGAACAAGGCAAATTCATAATGGCTACGAAATCTCCTTCTTTATTCATCAGTTTCATGAGCGACGTTACGGTTTGTTTCGCATGATCAGCGATGCAGTTTATAGTGCTGTTGGGTAAGTTTTCTAAAAAAGTTGGTCGGTTTCTAAGAGTTTTATTTACTTCACAATGGGGTCTGGAATATCAGCCATCGTTGTTGCTTATTGGTCCGCCATTAAAGCTTTGCCTCCCGAAGCTCAAATGTCTCATGTCATTGTTATGCTCAAATTAAAACTACTCTTGTTCTTAGTATTGTTTCG

mRNA sequence

ATGTCAAGAGAAGTAGCAGATGACTCAGTACTTCCAATAGAAACTGATCAAACTATAAATGTTAAGGATAAAGAAAATCGAAAGAAGAAGAATGAAGGAGGAGAAAGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAATCCTCCAGGCGGCGTATGGCAAGAACGACAGCAACCCGAACTACGAACAAGGCAAATTCATAATGGCTACGAAATCTCCTTCTTTATTCATCAGTTTCATGAGCGACGTTACGGTTTGTTTCGCATGATCAGCGATGCAGTTTATAGTGCTGTTGGGTAA

Coding sequence (CDS)

ATGTCAAGAGAAGTAGCAGATGACTCAGTACTTCCAATAGAAACTGATCAAACTATAAATGTTAAGGATAAAGAAAATCGAAAGAAGAAGAATGAAGGAGGAGAAAGGGATAGGGATTTTCTAATGGTAGCAACAACATTCATTGCAGCCATGGCTTTCCAAGCCGGGACGAATCCTCCAGGCGGCGTATGGCAAGAACGACAGCAACCCGAACTACGAACAAGGCAAATTCATAATGGCTACGAAATCTCCTTCTTTATTCATCAGTTTCATGAGCGACGTTACGGTTTGTTTCGCATGATCAGCGATGCAGTTTATAGTGCTGTTGGGTAA

Protein sequence

MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPPGGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG*

Homology

[Close]

BLAST of Csa6G363540 vs. TrEMBL
Match: A0A0A0KDK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363540 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.1e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP 60
           MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP
Sbjct: 1   MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP 60

Query: 61  GGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG 111
           GGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG
Sbjct: 61  GGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG 110

[Close]

BLAST of Csa6G363540 vs. NCBI nr
Match: gi|700192394|gb|KGN47598.1| (hypothetical protein Csa_6G363540 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 3.0e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP 60
           MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP
Sbjct: 1   MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP 60

Query: 61  GGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG 111
           GGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG
Sbjct: 61  GGVWQERQQPELRTRQIHNGYEISFFIHQFHERRYGLFRMISDAVYSAVG 110

[Close]

BLAST of Csa6G363540 vs. NCBI nr
Match: gi|659089597|ref|XP_008445596.1| (PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 33/66 (50.00%), Postives = 37/66 (56.06%), Query Frame = 1


Query: 1  MSREVADDSVLPIETDQTINVKDKENRKKKNEGGERDRDFLMVATTFIAAMAFQAGTNPP 60
          MSR+      + I  D T    +K      N     D DFLMV TTFIA +AFQ GTNPP
Sbjct: 1  MSRQNNGAESVAITIDTTETGHEKNKMMNNNNWIREDTDFLMVVTTFIATVAFQIGTNPP 60

Query: 61 GGVWQE 67
          GGVWQE
Sbjct: 61 GGVWQE 66

[Close]

BLAST of Csa6G363540 vs. NCBI nr
Match: gi|778715279|ref|XP_011657373.1| (PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1


Query: 13 IETDQTINVKDKENRKKKNEGGER-DRDFLMVATTFIAAMAFQAGTNPPGGVWQE 67
          I  D T +   ++N+   N    R D DFLMV TTFIA +AFQ GTNPPGGVWQE
Sbjct: 14 ITIDTTDDTGHEKNKMMNNNNWMREDTDFLMVVTTFIATVAFQIGTNPPGGVWQE 68

The following BLAST results are available for this feature:

BLAST of Csa6G363540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK4_CUCSA	2.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363540 PE=4 SV=1	[more]

BLAST of Csa6G363540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192394\|gb\|KGN47598.1\|	3.0e-56	100.00	hypothetical protein Csa_6G363540 [Cucumis sativus]	[more]
gi\|659089597\|ref\|XP_008445596.1\|	2.6e-07	50.00	PREDICTED: uncharacterized protein LOC103488576 [Cucumis melo]	[more]
gi\|778715279\|ref\|XP_011657373.1\|	1.3e-06	56.36	PREDICTED: uncharacterized protein LOC105435852 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026961	PGG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU131716	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G363540.1	Csa6G363540.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU131716	CU131716	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026961	PGG domain	PFAM	PF13962	PGG	coord: 35..73 score: 1.
None	No IPR available	PANTHER	PTHR24177	FAMILY NOT NAMED	coord: 14..66 score: 1.0
None	No IPR available	PANTHER	PTHR24177:SF17	SUBFAMILY NOT NAMED	coord: 14..66 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G363540	MELO3C011473	Melon (DHL92) v3.5.1	cumeB466
Csa6G363540	ClCG08G009950	Watermelon (Charleston Gray)	cuwcgB496
Csa6G363540	Lsi08G008500	Bottle gourd (USVL1VR-Ls)	culsiB470
Csa6G363540	MELO3C011473.2	Melon (DHL92) v3.6.1	cumedB447
Csa6G363540	CsGy6G018630	Cucumber (Gy14) v2	cgybcuB281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G363540	Watermelon (97103) v2	cuwmbB487
Csa6G363540	Wax gourd	cuwgoB587
Csa6G363540	Cucumber (Gy14) v1	cgycuB041
Csa6G363540	Cucurbita maxima (Rimu)	cmacuB195
Csa6G363540	Cucurbita maxima (Rimu)	cmacuB805
Csa6G363540	Cucurbita moschata (Rifu)	cmocuB179
Csa6G363540	Cucurbita moschata (Rifu)	cmocuB796
Csa6G363540	Watermelon (97103) v1	cuwmB456
Csa6G363540	Cucurbita pepo (Zucchini)	cpecuB119
Csa6G363540	Cucurbita pepo (Zucchini)	cpecuB841
Csa6G363540	Silver-seed gourd	carcuB0158
Csa6G363540	Silver-seed gourd	carcuB0718