Lsi08G006640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G006640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	30S ribosomal protein S14, putative
Location	chr08 : 14970164 .. 14970469 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGGACAAGCGAAACATTCTTGATCATTTTCGCCGAGAGCTTGCTGCAAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCATTTGCAACGATCCGAGTCTTCCTAACGATGTGCGTGAGGAGCAGCGTTATAAGCTGTCGAAATTGCCAAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGTCGACCTAGGTCTGTCTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGCGATCTGGCGACCAAAGGTCTTATAATGGGTGTCAAGAAATCTTCTTGGTAG

mRNA sequence

ATGTCGGGGGACAAGCGAAACATTCTTGATCATTTTCGCCGAGAGCTTGCTGCAAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCATTTGCAACGATCCGAGTCTTCCTAACGATGTGCGTGAGGAGCAGCGTTATAAGCTGTCGAAATTGCCAAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGTCGACCTAGGTCTGTCTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGCGATCTGGCGACCAAAGGTCTTATAATGGGTGTCAAGAAATCTTCTTGGTAG

Coding sequence (CDS)

ATGTCGGGGGACAAGCGAAACATTCTTGATCATTTTCGCCGAGAGCTTGCTGCAAAGTTTGAGTTGAAGCGGAAGCTTTACAAAGCCATTTGCAACGATCCGAGTCTTCCTAACGATGTGCGTGAGGAGCAGCGTTATAAGCTGTCGAAATTGCCAAGAAATAGTTCGTTCACTCGACTGAGGAATCGCTGCATTTTCACCGGTCGACCTAGGTCTGTCTACCAGCTTTTCCGTGTTTCTCGTATCGTTTTCCGCGATCTGGCGACCAAAGGTCTTATAATGGGTGTCAAGAAATCTTCTTGGTAG

Protein sequence

MSGDKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW

Homology

[Close]

BLAST of Lsi08G006640 vs. Swiss-Prot
Match: RT14_OENBE (Ribosomal protein S14, mitochondrial OS=Oenothera berteroana GN=RPS14 PE=3 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-37
Identity = 72/98 (73.47%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LA K+EL+RKLYKA CNDP+LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 2   EKRNIRDHKRRLLATKYELRRKLYKAFCNDPALPSDMRDKHRYKLSKLPRNSSFARVRNR 61

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CI TGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 62  CISTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 99

[Close]

BLAST of Lsi08G006640 vs. Swiss-Prot
Match: RT14_VICFA (Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36
Identity = 72/98 (73.47%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA C D  LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNR 62

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CI TGRPRSVY+LFR+SRIVFR LA++G +MG+KKSSW
Sbjct: 63  CISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW 100

[Close]

BLAST of Lsi08G006640 vs. Swiss-Prot
Match: RT14_BRANA (Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-34
Identity = 69/98 (70.41%), Postives = 83/98 (84.69%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +K+N  DH RR LAAKFEL+RKLYKA C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKQNSRDHKRRLLAAKFELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 62

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CI TGRPRSV + FR+ RIVFR LA++G +MG+KKSSW
Sbjct: 63  CISTGRPRSVSEFFRIYRIVFRGLASRGSLMGIKKSSW 100

[Close]

BLAST of Lsi08G006640 vs. Swiss-Prot
Match: RT14_MARPO (Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-31
Identity = 66/94 (70.21%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 8   ILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFT 67
           I DH RR L AK+ELKR  YKAIC D +LPN +R E  +KLSKLPRNSS TR+RNRCIFT
Sbjct: 6   IRDHKRRLLVAKYELKRMHYKAICQDRNLPNKIRYEYFFKLSKLPRNSSKTRVRNRCIFT 65

Query: 68  GRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           GRPRSVY+LFR+SRIVFR+LA+KG ++G+ KS W
Sbjct: 66  GRPRSVYKLFRISRIVFRELASKGSLIGINKSCW 99

[Close]

BLAST of Lsi08G006640 vs. Swiss-Prot
Match: RT14_PROWI (Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-20
Identity = 52/89 (58.43%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 13  RRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFTGRPRS 72
           RR+L  K+E KR LYKA+ +D +L  D+R     KL+KLPRNSS  R++NRCI TGR  S
Sbjct: 11  RRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGRGHS 70

Query: 73  VYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           VY+  R+SRI FRDLA +GLI G  KSSW
Sbjct: 71  VYKFCRISRIKFRDLANQGLIQGCVKSSW 99

[Close]

BLAST of Lsi08G006640 vs. TrEMBL
Match: A0A0A0LSR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G386130 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42
Identity = 86/101 (85.15%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 1   MSGDKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGDKRNILD++RR+LAAKFELKR L+KAICNDPSLP D+REE R KLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFELKRNLFKAICNDPSLPKDIREEHRNKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Lsi08G006640 vs. TrEMBL
Match: V9VFW3_AMBTC (Ribosomal protein S14 OS=Amborella trichopoda GN=rps14 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.4e-36
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 62

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CIFTGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 63  CIFTGRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100

[Close]

BLAST of Lsi08G006640 vs. TrEMBL
Match: A0A0M5L7R7_9MAGN (Ribosomal protein S14 OS=Heuchera parviflora var. saurensis GN=rps14 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.4e-36
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 23  EKRNIRDHKRRLLAAKYELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 82

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CIFTGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 83  CIFTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 120

[Close]

BLAST of Lsi08G006640 vs. TrEMBL
Match: Q0QG47_JUNEF (Ribosomal protein S14 OS=Juncus effusus PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 72/98 (73.47%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA+C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKALCQDPDLPSDMRDKHRYKLSKLPRNSSFLRVRNR 62

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CI+TGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 63  CIYTGRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100

[Close]

BLAST of Lsi08G006640 vs. TrEMBL
Match: A0A0J8CR24_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051900 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-35
Identity = 72/99 (72.73%), Postives = 90/99 (90.91%), Query Frame = 1


Query: 3   GDKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRN 62
           GDKRNILD+ RR+LAAK+EL+RKLYKA+C DP LP  ++E+ RYKLSKLPRNS+F RLRN
Sbjct: 46  GDKRNILDYKRRKLAAKYELRRKLYKALCRDPELPPSMKEKHRYKLSKLPRNSAFNRLRN 105

Query: 63  RCIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           RCIFTGRPR+VY+ FR+SRIVFR+LA++G ++GVKK+SW
Sbjct: 106 RCIFTGRPRAVYEKFRMSRIVFRELASQGQLLGVKKASW 144

[Close]

BLAST of Lsi08G006640 vs. TAIR10
Match: AT2G34520.1 (AT2G34520.1 mitochondrial ribosomal protein S14)

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-36
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1


Query: 3   GDKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRN 62
           G KRN  DH RR LAA+FEL+RKLYKA C DP LP+++R++ RYKLSKLPRNS+F R+RN
Sbjct: 66  GVKRNSADHRRRLLAARFELRRKLYKAFCKDPDLPSEMRDKNRYKLSKLPRNSAFARIRN 125

Query: 63  RCIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           RC+FTGR RSV +LFRVSRIVFR LA+KG +MG+ KSSW
Sbjct: 126 RCVFTGRSRSVTELFRVSRIVFRGLASKGALMGITKSSW 164

[Close]

BLAST of Lsi08G006640 vs. TAIR10
Match: ATCG00330.1 (ATCG00330.1 chloroplast ribosomal protein S14)

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-08
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1


Query: 13  RRELAAKFEL-KRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNRCIFTGRPR 72
           R++L  K+ L +R   K I   PSL    + +   KL   PRNS+ TRL  RC  TGRPR
Sbjct: 13  RQKLEKKYHLIRRSSKKEISKIPSLSE--KWKIHGKLQSPPRNSAPTRLHRRCFSTGRPR 72

Query: 73  SVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           + Y+ F +S  + R++    L+ G  +SSW
Sbjct: 73  ANYRDFGLSGHILREMVQACLLPGATRSSW 100

[Close]

BLAST of Lsi08G006640 vs. NCBI nr
Match: gi|659113442|ref|XP_008456576.1| (PREDICTED: ribosomal protein S14, mitochondrial [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 2.7e-43
Identity = 87/101 (86.14%), Postives = 96/101 (95.05%), Query Frame = 1


Query: 1   MSGDKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGDKRNILD++RR+LAAKFE+KR L+KAICNDPSLP DVREE RYKLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFEVKRNLFKAICNDPSLPKDVREEHRYKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Lsi08G006640 vs. NCBI nr
Match: gi|778672795|ref|XP_011649873.1| (PREDICTED: ribosomal protein S14, mitochondrial [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 86/101 (85.15%), Postives = 95/101 (94.06%), Query Frame = 1


Query: 1   MSGDKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRL 60
           MSGDKRNILD++RR+LAAKFELKR L+KAICNDPSLP D+REE R KLSKLPRNSSFTRL
Sbjct: 1   MSGDKRNILDNYRRQLAAKFELKRNLFKAICNDPSLPKDIREEHRNKLSKLPRNSSFTRL 60

Query: 61  RNRCIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           RNRCIFTGRPR VYQLFR+SRIVFR+LA KGL+MGVKK+SW
Sbjct: 61  RNRCIFTGRPRGVYQLFRMSRIVFRELAKKGLVMGVKKASW 101

[Close]

BLAST of Lsi08G006640 vs. NCBI nr
Match: gi|557954302|gb|AHA47122.1| (ribosomal protein S14 (mitochondrion) [Amborella trichopoda])

HSP 1 Score: 157.9 bits (398), Expect = 9.2e-36
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 62

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CIFTGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 63  CIFTGRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100

[Close]

BLAST of Lsi08G006640 vs. NCBI nr
Match: gi|927682216|gb|ALE29228.1| (ribosomal protein S14 (mitochondrion) [Heuchera parviflora var. saurensis])

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-35
Identity = 73/98 (74.49%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 23  EKRNIRDHKRRLLAAKYELRRKLYKAFCKDPDLPSDMRDKHRYKLSKLPRNSSFARVRNR 82

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CIFTGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 83  CIFTGRPRSVYEFFRISRIVFRGLASRGPLMGIKKSSW 120

[Close]

BLAST of Lsi08G006640 vs. NCBI nr
Match: gi|88193119|gb|ABD42934.1| (ribosomal protein S14 (mitochondrion) [Juncus effusus])

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 72/98 (73.47%), Postives = 88/98 (89.80%), Query Frame = 1


Query: 4   DKRNILDHFRRELAAKFELKRKLYKAICNDPSLPNDVREEQRYKLSKLPRNSSFTRLRNR 63
           +KRNI DH RR LAAK+EL+RKLYKA+C DP LP+D+R++ RYKLSKLPRNSSF R+RNR
Sbjct: 3   EKRNIRDHKRRLLAAKYELRRKLYKALCQDPDLPSDMRDKHRYKLSKLPRNSSFLRVRNR 62

Query: 64  CIFTGRPRSVYQLFRVSRIVFRDLATKGLIMGVKKSSW 102
           CI+TGRPRSVY+ FR+SRIVFR LA++G +MG+KKSSW
Sbjct: 63  CIYTGRPRSVYEFFRISRIVFRGLASRGSLMGIKKSSW 100

The following BLAST results are available for this feature:

BLAST of Lsi08G006640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT14_OENBE	2.9e-37	73.47	Ribosomal protein S14, mitochondrial OS=Oenothera berteroana GN=RPS14 PE=3 SV=2	[more]
RT14_VICFA	2.4e-36	73.47	Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2	[more]
RT14_BRANA	1.7e-34	70.41	Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1	[more]
RT14_MARPO	2.3e-31	70.21	Ribosomal protein S14, mitochondrial OS=Marchantia polymorpha GN=RPS14 PE=3 SV=2	[more]
RT14_PROWI	2.4e-20	58.43	Ribosomal protein S14, mitochondrial OS=Prototheca wickerhamii GN=RPS14 PE=3 SV=...	[more]

BLAST of Lsi08G006640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSR8_CUCSA	1.2e-42	85.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G386130 PE=4 SV=1	[more]
V9VFW3_AMBTC	6.4e-36	74.49	Ribosomal protein S14 OS=Amborella trichopoda GN=rps14 PE=2 SV=1	[more]
A0A0M5L7R7_9MAGN	8.4e-36	74.49	Ribosomal protein S14 OS=Heuchera parviflora var. saurensis GN=rps14 PE=4 SV=1	[more]
Q0QG47_JUNEF	1.1e-35	73.47	Ribosomal protein S14 OS=Juncus effusus PE=4 SV=1	[more]
A0A0J8CR24_BETVU	1.4e-35	72.73	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051900 PE=4 S...	[more]

BLAST of Lsi08G006640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34520.1	2.6e-36	70.71	mitochondrial ribosomal protein S14	[more]
ATCG00330.1	5.1e-08	38.89	ATCG00330.1 chloroplast ribosomal protein S14	[more]

BLAST of Lsi08G006640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113442\|ref\|XP_008456576.1\|	2.7e-43	86.14	PREDICTED: ribosomal protein S14, mitochondrial [Cucumis melo]	[more]
gi\|778672795\|ref\|XP_011649873.1\|	1.7e-42	85.15	PREDICTED: ribosomal protein S14, mitochondrial [Cucumis sativus]	[more]
gi\|557954302\|gb\|AHA47122.1\|	9.2e-36	74.49	ribosomal protein S14 (mitochondrion) [Amborella trichopoda]	[more]
gi\|927682216\|gb\|ALE29228.1\|	1.2e-35	74.49	ribosomal protein S14 (mitochondrion) [Heuchera parviflora var. saurensis]	[more]
gi\|88193119\|gb\|ABD42934.1\|	1.6e-35	73.47	ribosomal protein S14 (mitochondrion) [Juncus effusus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018271	Ribosomal_S14_CS
IPR001209	Ribosomal_S14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009853	photorespiration
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G006640.1	Lsi08G006640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001209	Ribosomal protein S14	PANTHER	PTHR19836	30S RIBOSOMAL PROTEIN S14	coord: 1..101 score: 1.7
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 47..100 score: 3.5
IPR018271	Ribosomal protein S14, conserved site	PROSITE	PS00527	RIBOSOMAL_S14	coord: 63..85 scor
None	No IPR available	GENE3D	G3DSA:4.10.830.10		coord: 43..101 score: 5.8
None	No IPR available	PANTHER	PTHR19836:SF22	SUBFAMILY NOT NAMED	coord: 1..101 score: 1.7
None	No IPR available	unknown	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 8..101 score: 5.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G006640	Csa2G386130	Cucumber (Chinese Long) v2	culsiB145
Lsi08G006640	CSPI02G24360	Wild cucumber (PI 183967)	cpilsiB144
Lsi08G006640	Cucsa.163290	Cucumber (Gy14) v1	cgylsiB269
Lsi08G006640	CmaCh15G004850	Cucurbita maxima (Rimu)	cmalsiB293
Lsi08G006640	CmoCh15G004930	Cucurbita moschata (Rifu)	cmolsiB281
Lsi08G006640	CmoCh04G026530	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G006640	Cla013713	Watermelon (97103) v1	lsiwmB475
Lsi08G006640	MELO3C019879	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G006640	ClCG08G008070	Watermelon (Charleston Gray)	lsiwcgB443
Lsi08G006640	MELO3C019879.2	Melon (DHL92) v3.6.1	lsimedB491
Lsi08G006640	Cla97C08G150830	Watermelon (97103) v2	lsiwmbB448
Lsi08G006640	Bhi04G001027	Wax gourd	lsiwgoB594
Lsi08G006640	Cp4.1LG01g24810	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G006640	Cp4.1LG13g10130	Cucurbita pepo (Zucchini)	cpelsiB161
Lsi08G006640	CsGy2G024160	Cucumber (Gy14) v2	cgyblsiB132
Lsi08G006640	Carg02428	Silver-seed gourd	carlsiB243
Lsi08G006640	Carg04602	Silver-seed gourd	carlsiB628
Lsi08G006640	CsaV3_2G032930	Cucumber (Chinese Long) v3	cuclsiB157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G006640	Cucurbita moschata (Rifu)	cmolsiB282
Lsi08G006640	Cucurbita moschata (Rifu)	cmolsiB700
Lsi08G006640	Cucurbita pepo (Zucchini)	cpelsiB158
Lsi08G006640	Cucurbita pepo (Zucchini)	cpelsiB384
Lsi08G006640	Wild cucumber (PI 183967)	cpilsiB393
Lsi08G006640	Cucumber (Chinese Long) v2	culsiB389
Lsi08G006640	Melon (DHL92) v3.5.1	lsimeB463
Lsi08G006640	Watermelon (Charleston Gray)	lsiwcgB435
Lsi08G006640	Watermelon (97103) v1	lsiwmB464
Lsi08G006640	Watermelon (97103) v1	lsiwmB485
Lsi08G006640	Cucumber (Gy14) v2	cgyblsiB354
Lsi08G006640	Melon (DHL92) v3.6.1	lsimedB482
Lsi08G006640	Silver-seed gourd	carlsiB769
Lsi08G006640	Cucumber (Chinese Long) v3	cuclsiB412
Lsi08G006640	Watermelon (97103) v2	lsiwmbB426
Lsi08G006640	Watermelon (97103) v2	lsiwmbB439
Lsi08G006640	Wax gourd	lsiwgoB618
Lsi08G006640	Bottle gourd (USVL1VR-Ls)	lsilsiB134
Lsi08G006640	Bottle gourd (USVL1VR-Ls)	lsilsiB152
Lsi08G006640	Cucumber (Gy14) v1	cgylsiB498
Lsi08G006640	Cucurbita maxima (Rimu)	cmalsiB294
Lsi08G006640	Cucurbita maxima (Rimu)	cmalsiB703
Lsi08G006640	Cucurbita maxima (Rimu)	cmalsiB706