Lsi08G005400 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G005400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr08 : 13461637 .. 13461936 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATCCATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATCCATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTTTGTAATATTGGCTTCATATCTTTCCTTCCTCCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCATCCATCTTCCATATCCATCAACCATTACAAATACAAACCTCCACGGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCGCCACCGCTGCCGCCCAAGTCCACATGGCCACGAAAGTTCACTCGTAAATCGTCTCCACCTCCTTTCTAA

Protein sequence

MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF

Homology

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BLAST of Lsi08G005400 vs. TrEMBL
Match: A0A0A0KI69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-21
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLP--PSPPICRHA 60
           MGF  LASYL  LLIAFF LNLPSKLTAHYIH SS S N Y+Y PP LP  P PPICR  
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSS-STNLYEYGPPPLPLLPPPPICRQG 60

Query: 61  APPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           APP P KKQ + KPLP   PP PPK  WPR+FT KS PPPF
Sbjct: 61  APP-PAKKQNKLKPLPSLSPP-PPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lsi08G005400 vs. NCBI nr
Match: gi|700192262|gb|KGN47466.1| (hypothetical protein Csa_6G336260 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 6.3e-21
Identity = 70/101 (69.31%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 1   MGFVILASYLSFLLIAFFSLNLPSKLTAHYIHPSSISINHYKYKPPRLP--PSPPICRHA 60
           MGF  LASYL  LLIAFF LNLPSKLTAHYIH SS S N Y+Y PP LP  P PPICR  
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSS-STNLYEYGPPPLPLLPPPPICRQG 60

Query: 61  APPLPPKKQYEFKPLPLTPPPLPPKSTWPRKFTRKSSPPPF 100
           APP P KKQ + KPLP   PP PPK  WPR+FT KS PPPF
Sbjct: 61  APP-PAKKQNKLKPLPSLSPP-PPKFKWPRRFTPKSPPPPF 98

The following BLAST results are available for this feature:

BLAST of Lsi08G005400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G005400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69_CUCSA	4.4e-21	69.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G336260 PE=4 SV=1	[more]

BLAST of Lsi08G005400 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G005400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192262\|gb\|KGN47466.1\|	6.3e-21	69.31	hypothetical protein Csa_6G336260 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005400.1	Lsi08G005400.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G005400	MELO3C008379	Melon (DHL92) v3.5.1	lsimeB475
Lsi08G005400	MELO3C008379.2	Melon (DHL92) v3.6.1	lsimedB494
Lsi08G005400	Cla97C08G149500	Watermelon (97103) v2	lsiwmbB445

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G005400	Wax gourd	lsiwgoB602
Lsi08G005400	Bottle gourd (USVL1VR-Ls)	lsilsiB122
Lsi08G005400	Cucurbita maxima (Rimu)	cmalsiB294
Lsi08G005400	Cucurbita maxima (Rimu)	cmalsiB703
Lsi08G005400	Cucurbita moschata (Rifu)	cmolsiB282
Lsi08G005400	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G005400	Cucurbita pepo (Zucchini)	cpelsiB158
Lsi08G005400	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G005400	Watermelon (Charleston Gray)	lsiwcgB439
Lsi08G005400	Watermelon (97103) v1	lsiwmB466
Lsi08G005400	Melon (DHL92) v3.6.1	lsimedB487
Lsi08G005400	Silver-seed gourd	carlsiB059
Lsi08G005400	Silver-seed gourd	carlsiB758
Lsi08G005400	Cucumber (Chinese Long) v3	cuclsiB572