Cla97C08G149500 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149500
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17876886 .. 17877182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGAGGTTTGTAGTATTGGCCTCATATCTTTCCTTCCTTCTCCTTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATCACATTCACCCATCTTCATCCATCAACCACCATAAACACAAAGCTCCGCGGCTGCCACCGTCACCTCCGATCTGCAAGCATGCTGCACCACCACCGCCAGCCGAGAAACAATACGAGTTCAAGCCGCTGCCATTGACGCCACCACCGCTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCGCTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKHKAPRLPPSPPICKHAAPPPPAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF

Homology

[Close]

BLAST of Cla97C08G149500 vs. NCBI nr
Match: KGN47466.1 (hypothetical protein Csa_6G336260 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 1  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKH-KAPRLPPSPPICKHAAP 60
          M F  LASYL  LL+AFF LNLPSKLTAH+IH SSS N +++                  
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPXXXXXXXXXXXXXXXX 60

Query: 61 XXXAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
          XXX     + KPLP +      K  WP++FT KSPPPPF
Sbjct: 61 XXXXXXXXKLKPLP-SLXXXXXKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Cla97C08G149500 vs. TrEMBL
Match: tr|A0A0A0KI69|A0A0A0KI69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 1  MRFVVLASYLSFLLLAFFSLNLPSKLTAHHIHPSSSINHHKH-KAPRLPPSPPICKHAAP 60
          M F  LASYL  LL+AFF LNLPSKLTAH+IH SSS N +++                  
Sbjct: 1  MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPXXXXXXXXXXXXXXXX 60

Query: 61 XXXAEKQYEFKPLPLTPPPLPPKSTWPQKFTAKSPPPPF 99
          XXX     + KPLP +      K  WP++FT KSPPPPF
Sbjct: 61 XXXXXXXXKLKPLP-SLXXXXXKFKWPRRFTPKSPPPPF 98

The following BLAST results are available for this feature:

BLAST of Cla97C08G149500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47466.1	1.6e-04	47.47	hypothetical protein Csa_6G336260 [Cucumis sativus]	[more]

BLAST of Cla97C08G149500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KI69\|A0A0A0KI69_CUCSA	1.1e-04	47.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]

BLAST of Cla97C08G149500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149500 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149500.1	Cla97C08G149500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149500	MELO3C008379	Melon (DHL92) v3.5.1	mewmbB308
Cla97C08G149500	Lsi08G005400	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G149500	MELO3C008379.2	Melon (DHL92) v3.6.1	medwmbB294

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149500	Wax gourd	wgowmbB325
Cla97C08G149500	Silver-seed gourd	carwmbB0063
Cla97C08G149500	Silver-seed gourd	carwmbB0862
Cla97C08G149500	Cucumber (Gy14) v2	cgybwmbB474
Cla97C08G149500	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149500	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149500	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149500	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149500	Watermelon (97103) v1	wmwmbB100
Cla97C08G149500	Watermelon (Charleston Gray)	wcgwmbB336