Lsi08G005380 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G005380
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 13415216 .. 13415641 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCCGTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCCTTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGCCACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATCCCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTTTCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCTCAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCCCCTCCGTGGATCGCCCCCACCTCCTTTCTAA

mRNA sequence

ATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCCGTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCCTTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGCCACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATCCCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTTTCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCTCAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCCCCTCCGTGGATCGCCCCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCCGTCGTTGCCGTTATTGCCGCCTCCGACCACTAGACCTATAGTTCCTTATTACCCTTTTATATTCCCTCCTCATCCATCTAAAAAGATTTATAAACACACATCGCCACTGCCACCGTCGCTGCAGGGATCGGGAAGGCCAATAGTTCCTTATTATCCCTTTAAATTTCCACCACCTCCATCAAGTAAACGCCCCAATCCTCCTCCGAGCTACCATGTCCTTTCCCCACCCGCGTCACCACAGTCAGCCAAGAAGCATTATATATCTCAGGCAAGGCGGTCACCACCACCGCCACCACCTAAGTTGCCGCCGTATCAGTGGCCAAGGGAGCCCCTCCGTGGATCGCCCCCACCTCCTTTCTAA

Protein sequence

MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHTSPLPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPPPPPPKLPPYQWPREPLRGSPPPPF
BLAST of Lsi08G005380 vs. TrEMBL
Match: A0A0A0KD80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G337020 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1

Query: 1   MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SP 60
           M LLSLNLPSN A H I  S  S PL+PP  TRPIVP++PF FP  P +K ++HT    P
Sbjct: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPP-ITRPIVPHHPFTFPS-PFRKTFRHTWLPPP 75

Query: 61  LPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPP 120
            PP+ Q   RPIVPY+P+KFPPPPS K+ NPPPSYH   PPA    A+K Y+S+ RR+ P
Sbjct: 76  SPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVRRATP 135

Query: 121 PPPPKLPPYQWPREPLRGSPPPPF 142
           PPPP + PYQWP+  +R SPPPPF
Sbjct: 136 PPPP-IKPYQWPKGKIRKSPPPPF 156

BLAST of Lsi08G005380 vs. NCBI nr
Match: gi|700192264|gb|KGN47468.1| (hypothetical protein Csa_6G337020 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-29
Identity = 85/144 (59.03%), Postives = 102/144 (70.83%), Query Frame = 1

Query: 1   MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPTTRPIVPYYPFIFPPHPSKKIYKHT---SP 60
           M LLSLNLPSN A H I  S  S PL+PP  TRPIVP++PF FP  P +K ++HT    P
Sbjct: 16  MSLLSLNLPSNSAEHDIPSSLLSPPLMPP-ITRPIVPHHPFTFPS-PFRKTFRHTWLPPP 75

Query: 61  LPPSLQGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQARRSPP 120
            PP+ Q   RPIVPY+P+KFPPPPS K+ NPPPSYH   PPA    A+K Y+S+ RR+ P
Sbjct: 76  SPPAQQELERPIVPYFPYKFPPPPSRKQANPPPSYHAFPPPALLLLARKLYMSEVRRATP 135

Query: 121 PPPPKLPPYQWPREPLRGSPPPPF 142
           PPPP + PYQWP+  +R SPPPPF
Sbjct: 136 PPPP-IKPYQWPKGKIRKSPPPPF 156

BLAST of Lsi08G005380 vs. NCBI nr
Match: gi|659133998|ref|XP_008466986.1| (PREDICTED: extensin-1-like, partial [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 72/117 (61.54%), Postives = 82/117 (70.09%), Query Frame = 1

Query: 1   MPLLSLNLPSNFAAHHIHPSPPSLPLLPPPT---TRPIVPYYPFIFPPHPSKKIYKHTSP 60
           +PLLSLNLPSNFAAH+I    PS  L PPP    TRPIVPY+PFIFPP P KK ++  + 
Sbjct: 16  LPLLSLNLPSNFAAHYI----PSSLLSPPPMPSITRPIVPYHPFIFPP-PFKKAFRRHTW 75

Query: 61  LPPSL---QGSGRPIVPYYPFKFPPPPSSKRPNPPPSYHVLSPPASPQSAKKHYISQ 112
           LPP L   Q   RPIVPYYP+KFPPPPS K+ NPP SYH   PP  P  AKK Y+S+
Sbjct: 76  LPPPLPPQQKLERPIVPYYPYKFPPPPSRKQANPPLSYHAFPPPTLPLPAKKLYMSE 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KD80_CUCSA1.6e-2959.03Uncharacterized protein OS=Cucumis sativus GN=Csa_6G337020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700192264|gb|KGN47468.1|2.4e-2959.03hypothetical protein Csa_6G337020 [Cucumis sativus][more]
gi|659133998|ref|XP_008466986.1|5.6e-2361.54PREDICTED: extensin-1-like, partial [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G005380.1Lsi08G005380.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G005380Cla97C08G149460Watermelon (97103) v2lsiwmbB445
Lsi08G005380CsaV3_6G030760Cucumber (Chinese Long) v3cuclsiB512
The following gene(s) are paralogous to this gene:

None