Cla97C08G149460 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149460
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	extensin-3-like
Location	Cla97Chr08 : 17849567 .. 17850040 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAA

mRNA sequence

ATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGAGTCTCATAACCCCCTTTTTGTATTCTTCCTCCTCATCATCATGCCATTGCTCTCTTTAAATTTGCCATCAAATTTTGCTGCACACCATATTCACCCATCTCCTCGGTCGTTGCTTCCGTCGCCACCTCCGACCACCAGACCTATAGTTCCTTATTACCCTTTTATATTTCCTCCTCCTCCATCTAAAAAGACTCATAAACACACATCGCGACCGCCACCATCGTTGCCACTGCAGGGATTGGGAAGGCCAATAGTTCCTTATTATCCATTTAAATTTCCACCACCTCCATCAAGAAAACGCCCTTATCCTCCGAGCTACCATGTCATTCCCCCACCGGCGTCACCATTGTCAGTGAAGAAGCTTTACATATCTCAGGCAAGGCACTCAGTGCCGCCGCCACCGCCTAAGGAGCAACCGCCATATCCGTGGGGGTGGACCATCCCTAGATCTCCCCCACCTCCTTTCTAA

Protein sequence

MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSPPPTTRPIVPYYPFIFPPPPSKKTHKHTSRPPPSLPLQGLGRPIVPYYPFKFPPPPSRKRPYPPSYHVIPPPASPLSVKKLYISQARHSVPPPPPKEQPPYPWGWTIPRSPPPPF

Homology

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BLAST of Cla97C08G149460 vs. NCBI nr
Match: XP_008466986.1 (PREDICTED: extensin-3-like, partial [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 71/130 (54.62%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSP--PXXXXXXXXXXXXXX 60
           MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL  P  P              
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLLSPPPMPSITRPIVPYHPFIF 60

Query: 61  XXXXXXXXHKHTSRPPPSLPLQGLXXXXXXXXXXXXXXXXXXXXPYPP-SYHVIPPPASP 120
                    +HT  PPP       XXXXXXXXXXXXXXXXX     PP SYH  PPP  P
Sbjct: 61  PPPFKKAFRRHTWLPPPLXXXXXXXXXXXXXXXXXXXXXXXRKQANPPLSYHAFPPPTLP 120

Query: 121 LSVKKLYISQ 128
           L  KKLY+S+
Sbjct: 121 LPAKKLYMSE 127

[Close]

BLAST of Cla97C08G149460 vs. TrEMBL
Match: tr|A0A1S3CSG8|A0A1S3CSG8_CUCME (extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-12
Identity = 71/130 (54.62%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 1   MESHNPLFVFFLLIIMPLLSLNLPSNFAAHHIHPSPRSLLPSP--PXXXXXXXXXXXXXX 60
           MESHNP+FVFFL II+PLLSLNLPSNFAAH+I   P SLL  P  P              
Sbjct: 1   MESHNPIFVFFLFIILPLLSLNLPSNFAAHYI---PSSLLSPPPMPSITRPIVPYHPFIF 60

Query: 61  XXXXXXXXHKHTSRPPPSLPLQGLXXXXXXXXXXXXXXXXXXXXPYPP-SYHVIPPPASP 120
                    +HT  PPP       XXXXXXXXXXXXXXXXX     PP SYH  PPP  P
Sbjct: 61  PPPFKKAFRRHTWLPPPLXXXXXXXXXXXXXXXXXXXXXXXRKQANPPLSYHAFPPPTLP 120

Query: 121 LSVKKLYISQ 128
           L  KKLY+S+
Sbjct: 121 LPAKKLYMSE 127

The following BLAST results are available for this feature:

BLAST of Cla97C08G149460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466986.1	1.3e-11	54.62	PREDICTED: extensin-3-like, partial [Cucumis melo]	[more]

BLAST of Cla97C08G149460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSG8\|A0A1S3CSG8_CUCME	8.3e-12	54.62	extensin-3-like OS=Cucumis melo OX=3656 GN=LOC103504386 PE=4 SV=1	[more]

BLAST of Cla97C08G149460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149460 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149460.1	Cla97C08G149460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 81..97 score: 28.24 coord: 55..76 score: 31.82 coord: 34..46 score: 44.62 coord: 102..119 score: 35.56 coord: 135..157 score: 30.77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149460	Cla013839	Watermelon (97103) v1	wmwmbB100
Cla97C08G149460	ClCG08G006700	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149460	Lsi08G005380	Bottle gourd (USVL1VR-Ls)	lsiwmbB445

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149460	Silver-seed gourd	carwmbB0063
Cla97C08G149460	Silver-seed gourd	carwmbB0862
Cla97C08G149460	Cucumber (Gy14) v2	cgybwmbB474
Cla97C08G149460	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149460	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149460	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149460	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149460	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G149460	Melon (DHL92) v3.5.1	mewmbB308
Cla97C08G149460	Wax gourd	wgowmbB325