Lsi07G010670 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G010670
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtein TIC 214
Locationchr07 : 16032075 .. 16033111 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTAACAATCCTAAAAAAAAGTTCCATTCGAGATTGGACTAAGAAAGGGAAGGAAGAAGGCGAGTCAGTATGCTAATGCCTCATCCTCAAATCAATCCTTCTCATAGGTTATTGTCCCAACGAATAAGTAATTGTAGAAGTGAAAGCTTCTTATAATTCGAAAAAGCAAGAGCAGCAAGTCCAAGTAAATAAAATACGAAAAAAAATACGTAATTTTTTTAGGATTAAACAAAAGGATTCGCAAATAAAAGTGCTAATGTTACAACCAGTCTATAAATTGTTAAAGCTTCCATAAAAGCCAGACTAAGCAATAAAGTACCTCAGATTTTTCCCTCCGCCTCAGGTTGTCTTGCGATCCCTTCTACAGCTTGGCCCGCAGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCGACGGCTGGAACAATCACAAACACCTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCAGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTTAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCAAGAAATGGGTTGGATTGATATTAGTCTGGATCAGCAAAATAATTCTATTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCAGTGTTACTAAGAAACTGAAAGAAACGGAGAAAATGGAGGAAAGGGGGGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTTCCGAAAAAAGACTTTGTAGTTATAATACCCAAATACCAAGTCGGTTCATTCATATTTATATTGATCATTAG

mRNA sequence

ATGTTGTTGTCTTGCGATCCCTTCTACAGCTTGGCCCGCAGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCGACGGCTGGAACAATCACAAACACCTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCAGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTTAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCAAGAAATGGGTTGGATTGATATTAGTCTGGATCAGCAAAATAATTCTATTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCAGTGTTACTAAGAAACTGAAAGAAACGGAGAAAATGGAGGAAAGGGGGGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTTCCGAAAAAAGACTTTGTAGTTATAATACCCAAATACCAAGTCGGTTCATTCATATTTATATTGATCATTAG

Coding sequence (CDS)

ATGTTGTTGTCTTGCGATCCCTTCTACAGCTTGGCCCGCAGCAGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCGACGGCTGGAACAATCACAAACACCTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCAGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTTAGATTAGTCAACATTTCTATGTTTCGATGCAACAACAAGATGTTATTTTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCAAGAAATGGGTTGGATTGATATTAGTCTGGATCAGCAAAATAATTCTATTAGATCTAATAAGTACCTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCAGTGTTACTAAGAAACTGAAAGAAACGGAGAAAATGGAGGAAAGGGGGGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAACCACTTCCGAAACGAAGGGGACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATACTTCTTCCGAAAAAAGACTTTGTAGTTATAATACCCAAATACCAAGTCGGTTCATTCATATTTATATTGATCATTAG

Protein sequence

MLLSCDPFYSLARSSTLTNPRSNRSKPDGWNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNKMLFFCWLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSSEKRLCSYNTQIPSRFIHIYIDH
Homology
[Close]
BLAST of Lsi07G010670 vs. Swiss-Prot
Match: TI214_DRIGR (Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.0e-67
Identity = 146/200 (73.00%), Postives = 157/200 (78.50%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MFRCNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNS-----IRSNKYLVSELRNSMARIFS 149
           MLF       WL+    F++ +G +   + Q+N+      IRSNKYLVSELRNSMARIFS
Sbjct: 164 MLFVTSSFIGWLIGHILFMKWVGLVLFWIRQKNSIRSNVLIRSNKYLVSELRNSMARIFS 223

Query: 150 ILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGST 209
           ILLFI CVYYLGRIPSP VTKKLKET + EERGESEEETDVEIETTSETKGTKQEQEGST
Sbjct: 224 ILLFIICVYYLGRIPSPIVTKKLKETSETEERGESEEETDVEIETTSETKGTKQEQEGST 283

Query: 210 EEDTSSEKRLCSYNTQIPSR 220
           EED S     CS   + P +
Sbjct: 284 EEDPS----FCSEEKEDPDK 299

[Close]
BLAST of Lsi07G010670 vs. Swiss-Prot
Match: TI214_EUCGG (Protein TIC 214 OS=Eucalyptus globulus subsp. globulus GN=TIC214 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.8e-67
Identity = 146/188 (77.66%), Postives = 152/188 (80.85%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSSML RLVNI MFRCNNK
Sbjct: 107 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNK 166

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLD--QQNNS------IRSNKYLVSELRNSMAR 149
           MLF       WL+    F   M W+++ L   QQNNS      IRSNKYLVSELRNSMAR
Sbjct: 167 MLFVTSSFVGWLIGHIFF---MKWVELVLVWIQQNNSIRSNKYIRSNKYLVSELRNSMAR 226

Query: 150 IFSILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQE 205
           IFSILLFITCVYYLGRIPSP VTKK KET + EERGE EEETDVEIETT ETKGT+QEQE
Sbjct: 227 IFSILLFITCVYYLGRIPSPIVTKKFKETSETEERGEGEEETDVEIETTFETKGTRQEQE 286

[Close]
BLAST of Lsi07G010670 vs. Swiss-Prot
Match: TI214_LIRTU (Protein TIC 214 OS=Liriodendron tulipifera GN=TIC214 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-66
Identity = 146/200 (73.00%), Postives = 155/200 (77.50%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MFRCNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQ-----NNSIRSNKYLVSELRNSMARIFS 149
           MLF       WL+    F++ +G +   + Q      N  IRSNKYLVSELRNSMARIFS
Sbjct: 164 MLFVTSSFVGWLIGHIFFMKWVGLVLFWIRQNHSIRSNVLIRSNKYLVSELRNSMARIFS 223

Query: 150 ILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGST 209
           ILLFITCVYYLGRIPSP VTKKLKET + EERGES EETDVEIETTSETKGTKQEQE ST
Sbjct: 224 ILLFITCVYYLGRIPSPIVTKKLKETSETEERGESAEETDVEIETTSETKGTKQEQEAST 283

Query: 210 EEDTSSEKRLCSYNTQIPSR 220
           EED S    LCS   + P +
Sbjct: 284 EEDPS----LCSEEKEDPDK 299

[Close]
BLAST of Lsi07G010670 vs. Swiss-Prot
Match: TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-65
Identity = 145/200 (72.50%), Postives = 155/200 (77.50%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MFRCNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFRCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQ-----NNSIRSNKYLVSELRNSMARIFS 149
           MLF       WL+    F++ +G +   + Q      N  IRSNKYLVSELRNSMARIFS
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLFWIRQNHSIKSNVLIRSNKYLVSELRNSMARIFS 223

Query: 150 ILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGST 209
           ILLFITCVYYLGR+P+P VTKKLKET K EERGESEEE DVEIETTSETKGTKQEQE ST
Sbjct: 224 ILLFITCVYYLGRMPAPIVTKKLKETSKTEERGESEEERDVEIETTSETKGTKQEQERST 283

Query: 210 EEDTSSEKRLCSYNTQIPSR 220
           EED S    LCS   + P +
Sbjct: 284 EEDPSPS--LCSEEKEDPDK 301

[Close]
BLAST of Lsi07G010670 vs. Swiss-Prot
Match: T214A_PIPCE (Putative protein TIC 214 N-terminal part OS=Piper cenocladum GN=TIC214 PE=5 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-65
Identity = 143/195 (73.33%), Postives = 158/195 (81.03%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH  DYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI +FRCN+K
Sbjct: 104 WNNHKHFLDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYLFRCNSK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           +LF       WL+    F++ +G + +S  +QN+SIRSNKYLVSEL NSMARIFSILLFI
Sbjct: 164 ILFVTSSFVGWLIGHILFMKWVGLV-LSWIRQNHSIRSNKYLVSELTNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 209
           T VYYLGR+PSP VTKKLKET +MEERGESEEETDVEIETTSETK TKQEQEGSTEED S
Sbjct: 224 TSVYYLGRMPSPIVTKKLKETSEMEERGESEEETDVEIETTSETKETKQEQEGSTEEDPS 283

Query: 210 SEKRLCSYNTQIPSR 220
               LCS   + P +
Sbjct: 284 ----LCSEEQEDPDK 293

[Close]
BLAST of Lsi07G010670 vs. TrEMBL
Match: A0A0K1NPU1_9MYRT (Hypothetical chloroplast RF19 OS=Eugenia uniflora GN=ycf1 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-67
Identity = 148/182 (81.32%), Postives = 153/182 (84.07%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSSML RLVNI MFRCNNK
Sbjct: 107 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNK 166

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLD--QQNNSIRSNKYLVSELRNSMARIFSILL 149
           MLF       WL+    F   M W+++ L   QQ NSIRSNKYLVSELRNSMARIFSILL
Sbjct: 167 MLFVTSSFVGWLIGHIFF---MKWVELVLVWIQQKNSIRSNKYLVSELRNSMARIFSILL 226

Query: 150 FITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEED 205
           FITCVYYLGRIPSP VTKK KET +MEERGESEEETDVEIETT ETKGTKQEQEGSTEED
Sbjct: 227 FITCVYYLGRIPSPIVTKKFKETSEMEERGESEEETDVEIETTFETKGTKQEQEGSTEED 285

[Close]
BLAST of Lsi07G010670 vs. TrEMBL
Match: A0A0A7LE95_9MAGN (Hypothetical chloroplast RF1 OS=Clematis fusca var. coreana GN=ycf1 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-67
Identity = 148/195 (75.90%), Postives = 159/195 (81.54%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MF+CNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFQCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G I   + +QN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLILFWI-RQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 209
           TCVYYLGRIPSP VTKKLKET K EERG+SEEE DVEIETTSETKGTKQEQEGS EED S
Sbjct: 224 TCVYYLGRIPSPIVTKKLKETSKKEERGKSEEEIDVEIETTSETKGTKQEQEGSAEEDPS 283

Query: 210 SEKRLCSYNTQIPSR 220
           S   LCS   + P +
Sbjct: 284 SSLSLCSEEKEDPDK 297

[Close]
BLAST of Lsi07G010670 vs. TrEMBL
Match: A0A0H3Y307_9MAGN (Photosystem I assembly protein Ycf1 OS=Anemone patens GN=ycf1 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.4e-67
Identity = 147/195 (75.38%), Postives = 159/195 (81.54%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MF+CNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFQCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G +   + +QN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLFWI-RQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 209
           TCVYYLGRIPSP VTKKLKET K EERG+SEEE DVEIETTSETKGTKQEQEGS EED S
Sbjct: 224 TCVYYLGRIPSPIVTKKLKETSKKEERGKSEEEIDVEIETTSETKGTKQEQEGSAEEDPS 283

Query: 210 SEKRLCSYNTQIPSR 220
           S   LCS   + P +
Sbjct: 284 SSLSLCSEEKEDPDK 297

[Close]
BLAST of Lsi07G010670 vs. TrEMBL
Match: A0A0H3XZS7_9MAGN (Photosystem I assembly protein Ycf1 OS=Pulsatilla vernalis GN=ycf1 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.4e-67
Identity = 147/195 (75.38%), Postives = 159/195 (81.54%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MF+CNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFQCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G +   + +QN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLFWI-RQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 209
           TCVYYLGRIPSP VTKKLKET K EERG+SEEE DVEIETTSETKGTKQEQEGS EED S
Sbjct: 224 TCVYYLGRIPSPIVTKKLKETSKKEERGKSEEEIDVEIETTSETKGTKQEQEGSAEEDPS 283

Query: 210 SEKRLCSYNTQIPSR 220
           S   LCS   + P +
Sbjct: 284 SSLSLCSEEKEDPDK 297

[Close]
BLAST of Lsi07G010670 vs. TrEMBL
Match: A0A0N7BUX5_9ROSA (Hypothetical chloroplast RF19 OS=Elaeagnus macrophylla GN=ycf1 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.4e-67
Identity = 146/180 (81.11%), Postives = 155/180 (86.11%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGST RNSMRNLSIQCVF NNLIFQLFNHFILPSSMLVRLVNI MFRCNNK
Sbjct: 104 WNNHKHFFDYGSTNRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G + + + QQN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLVWI-QQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 205
           TCVYYLGRIPSP +TKKLKET K EERGESEEETDVEIETTSETK TKQEQEGSTEED S
Sbjct: 224 TCVYYLGRIPSPIITKKLKETSKTEERGESEEETDVEIETTSETKETKQEQEGSTEEDPS 282

[Close]
BLAST of Lsi07G010670 vs. TAIR10
Match: ATCG01130.1 (ATCG01130.1 Ycf1 protein)

HSP 1 Score: 202.6 bits (514), Expect = 2.6e-52
Identity = 121/185 (65.41%), Postives = 130/185 (70.27%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRN MRNL IQCVF NNLIFQLFNHFILPSSML RLVNI MFRCNNK
Sbjct: 108 WNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNK 167

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSN--------KYLVSELRNSMAR 149
           MLF       WL+    F++ +G + + + QQNNSIRSN        K+LVSELRNSMAR
Sbjct: 168 MLFVTSSFVGWLIGHILFMKWVGLVLVWI-QQNNSIRSNVVIRSNKYKFLVSELRNSMAR 227

Query: 150 IFSILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQE 202
           IFSILLFITCVYYLGRIPSP  TKKLK                     TSET GTKQ+QE
Sbjct: 228 IFSILLFITCVYYLGRIPSPIFTKKLK--------------------GTSETGGTKQDQE 271

[Close]
BLAST of Lsi07G010670 vs. TAIR10
Match: ATCG01000.1 (ATCG01000.1 Ycf1 protein)

HSP 1 Score: 202.6 bits (514), Expect = 2.6e-52
Identity = 121/185 (65.41%), Postives = 130/185 (70.27%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRN MRNL IQCVF NNLIFQLFNHFILPSSML RLVNI MFRCNNK
Sbjct: 108 WNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNK 167

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSN--------KYLVSELRNSMAR 149
           MLF       WL+    F++ +G + + + QQNNSIRSN        K+LVSELRNSMAR
Sbjct: 168 MLFVTSSFVGWLIGHILFMKWVGLVLVWI-QQNNSIRSNVVIRSNKYKFLVSELRNSMAR 227

Query: 150 IFSILLFITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQE 202
           IFSILLFITCVYYLGRIPSP  TKKLK                     TSET GTKQ+QE
Sbjct: 228 IFSILLFITCVYYLGRIPSPIFTKKLK--------------------GTSETGGTKQDQE 271

[Close]
BLAST of Lsi07G010670 vs. TAIR10
Match: AT2G07739.1 (AT2G07739.1 Ycf1 protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-26
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRN MRNL IQCVF NNLIF+LFNH ILPSSML RLVNI MFRCNNK
Sbjct: 108 WNNHKHFFDYGSTTRNEMRNLRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNK 167

Query: 90  MLF 93
           MLF
Sbjct: 168 MLF 170

[Close]
BLAST of Lsi07G010670 vs. TAIR10
Match: ATMG00370.1 (ATMG00370.1 Ycf1 protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-26
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRN MRNL IQCVF NNLIF+LFNH ILPSSML RLVNI MFRCNNK
Sbjct: 108 WNNHKHFFDYGSTTRNEMRNLRIQCVFPNNLIFKLFNHLILPSSMLARLVNIYMFRCNNK 167

Query: 90  MLF 93
           MLF
Sbjct: 168 MLF 170

[Close]
BLAST of Lsi07G010670 vs. NCBI nr
Match: gi|918021144|ref|YP_009163537.1| (hypothetical chloroplast RF19 (plastid) [Eugenia uniflora])

HSP 1 Score: 264.2 bits (674), Expect = 2.1e-67
Identity = 148/182 (81.32%), Postives = 153/182 (84.07%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSSML RLVNI MFRCNNK
Sbjct: 107 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNK 166

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLD--QQNNSIRSNKYLVSELRNSMARIFSILL 149
           MLF       WL+    F   M W+++ L   QQ NSIRSNKYLVSELRNSMARIFSILL
Sbjct: 167 MLFVTSSFVGWLIGHIFF---MKWVELVLVWIQQKNSIRSNKYLVSELRNSMARIFSILL 226

Query: 150 FITCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEED 205
           FITCVYYLGRIPSP VTKK KET +MEERGESEEETDVEIETT ETKGTKQEQEGSTEED
Sbjct: 227 FITCVYYLGRIPSPIVTKKFKETSEMEERGESEEETDVEIETTFETKGTKQEQEGSTEED 285

[Close]
BLAST of Lsi07G010670 vs. NCBI nr
Match: gi|731443691|gb|AIZ57585.1| (hypothetical chloroplast RF1 (chloroplast) [Clematis fusca var. coreana])

HSP 1 Score: 263.8 bits (673), Expect = 2.7e-67
Identity = 148/195 (75.90%), Postives = 159/195 (81.54%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MF+CNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFQCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G I   + +QN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLILFWI-RQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 209
           TCVYYLGRIPSP VTKKLKET K EERG+SEEE DVEIETTSETKGTKQEQEGS EED S
Sbjct: 224 TCVYYLGRIPSPIVTKKLKETSKKEERGKSEEEIDVEIETTSETKGTKQEQEGSAEEDPS 283

Query: 210 SEKRLCSYNTQIPSR 220
           S   LCS   + P +
Sbjct: 284 SSLSLCSEEKEDPDK 297

[Close]
BLAST of Lsi07G010670 vs. NCBI nr
Match: gi|938339504|ref|YP_009171657.1| (hypothetical chloroplast RF19 (chloroplast) [Elaeagnus macrophylla])

HSP 1 Score: 263.5 bits (672), Expect = 3.5e-67
Identity = 146/180 (81.11%), Postives = 155/180 (86.11%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGST RNSMRNLSIQCVF NNLIFQLFNHFILPSSMLVRLVNI MFRCNNK
Sbjct: 104 WNNHKHFFDYGSTNRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G + + + QQN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLVWI-QQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 205
           TCVYYLGRIPSP +TKKLKET K EERGESEEETDVEIETTSETK TKQEQEGSTEED S
Sbjct: 224 TCVYYLGRIPSPIITKKLKETSKTEERGESEEETDVEIETTSETKETKQEQEGSTEEDPS 282

[Close]
BLAST of Lsi07G010670 vs. NCBI nr
Match: gi|844170075|gb|AKM98071.1| (photosystem I assembly protein Ycf1 (chloroplast) [Anemone patens])

HSP 1 Score: 263.5 bits (672), Expect = 3.5e-67
Identity = 147/195 (75.38%), Postives = 159/195 (81.54%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGSTTRNSMRNLSIQCVF NNLIFQLFNHFILPSS L RLVNI MF+CNNK
Sbjct: 104 WNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSTLARLVNIYMFQCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G +   + +QN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLFWI-RQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 209
           TCVYYLGRIPSP VTKKLKET K EERG+SEEE DVEIETTSETKGTKQEQEGS EED S
Sbjct: 224 TCVYYLGRIPSPIVTKKLKETSKKEERGKSEEEIDVEIETTSETKGTKQEQEGSAEEDPS 283

Query: 210 SEKRLCSYNTQIPSR 220
           S   LCS   + P +
Sbjct: 284 SSLSLCSEEKEDPDK 297

[Close]
BLAST of Lsi07G010670 vs. NCBI nr
Match: gi|938339493|ref|YP_009171646.1| (hypothetical chloroplast RF19 (chloroplast) [Elaeagnus macrophylla])

HSP 1 Score: 263.5 bits (672), Expect = 3.5e-67
Identity = 146/180 (81.11%), Postives = 155/180 (86.11%), Query Frame = 1 

Query: 30  WNNHKHLFDYGSTTRNSMRNLSIQCVFQNNLIFQLFNHFILPSSMLVRLVNISMFRCNNK 89
           WNNHKH FDYGST RNSMRNLSIQCVF NNLIFQLFNHFILPSSMLVRLVNI MFRCNNK
Sbjct: 104 WNNHKHFFDYGSTNRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNK 163

Query: 90  MLFFC-----WLVNWSHFIQEMGWIDISLDQQNNSIRSNKYLVSELRNSMARIFSILLFI 149
           MLF       WL+    F++ +G + + + QQN+SIRSNKYLVSELRNSMARIFSILLFI
Sbjct: 164 MLFVTSSFVGWLIGHILFMKWVGLVLVWI-QQNHSIRSNKYLVSELRNSMARIFSILLFI 223

Query: 150 TCVYYLGRIPSPSVTKKLKETEKMEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTS 205
           TCVYYLGRIPSP +TKKLKET K EERGESEEETDVEIETTSETK TKQEQEGSTEED S
Sbjct: 224 TCVYYLGRIPSPIITKKLKETSKTEERGESEEETDVEIETTSETKETKQEQEGSTEEDPS 282

The following BLAST results are available for this feature:
BLAST of Lsi07G010670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TI214_DRIGR6.0e-6773.00Protein TIC 214 OS=Drimys granadensis GN=TIC214 PE=3 SV=1[more]
TI214_EUCGG7.8e-6777.66Protein TIC 214 OS=Eucalyptus globulus subsp. globulus GN=TIC214 PE=3 SV=1[more]
TI214_LIRTU2.3e-6673.00Protein TIC 214 OS=Liriodendron tulipifera GN=TIC214 PE=3 SV=1[more]
TI214_BUXMI1.1e-6572.50Protein TIC 214 OS=Buxus microphylla GN=TIC214 PE=3 SV=1[more]
T214A_PIPCE1.5e-6573.33Putative protein TIC 214 N-terminal part OS=Piper cenocladum GN=TIC214 PE=5 SV=1[more]
BLAST of Lsi07G010670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0K1NPU1_9MYRT1.4e-6781.32Hypothetical chloroplast RF19 OS=Eugenia uniflora GN=ycf1 PE=4 SV=1[more]
A0A0A7LE95_9MAGN1.9e-6775.90Hypothetical chloroplast RF1 OS=Clematis fusca var. coreana GN=ycf1 PE=4 SV=1[more]
A0A0H3Y307_9MAGN2.4e-6775.38Photosystem I assembly protein Ycf1 OS=Anemone patens GN=ycf1 PE=4 SV=1[more]
A0A0H3XZS7_9MAGN2.4e-6775.38Photosystem I assembly protein Ycf1 OS=Pulsatilla vernalis GN=ycf1 PE=4 SV=1[more]
A0A0N7BUX5_9ROSA2.4e-6781.11Hypothetical chloroplast RF19 OS=Elaeagnus macrophylla GN=ycf1 PE=4 SV=1[more]
BLAST of Lsi07G010670 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01130.12.6e-5265.41ATCG01130.1 Ycf1 protein[more]
ATCG01000.12.6e-5265.41ATCG01000.1 Ycf1 protein[more]
AT2G07739.11.9e-2687.30 Ycf1 protein[more]
ATMG00370.11.9e-2687.30ATMG00370.1 Ycf1 protein[more]
BLAST of Lsi07G010670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|918021144|ref|YP_009163537.1|2.1e-6781.32hypothetical chloroplast RF19 (plastid) [Eugenia uniflora][more]
gi|731443691|gb|AIZ57585.1|2.7e-6775.90hypothetical chloroplast RF1 (chloroplast) [Clematis fusca var. coreana][more]
gi|938339504|ref|YP_009171657.1|3.5e-6781.11hypothetical chloroplast RF19 (chloroplast) [Elaeagnus macrophylla][more]
gi|844170075|gb|AKM98071.1|3.5e-6775.38photosystem I assembly protein Ycf1 (chloroplast) [Anemone patens][more]
gi|938339493|ref|YP_009171646.1|3.5e-6781.11hypothetical chloroplast RF19 (chloroplast) [Elaeagnus macrophylla][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008896TIC214
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G010670.1Lsi07G010670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 30..205
score: 2.6
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 30..202
score: 9.5E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G010670Cucumber (Chinese Long) v3cuclsiB250
Lsi07G010670Cucumber (Chinese Long) v3cuclsiB498
Lsi07G010670Watermelon (97103) v2lsiwmbB392
Lsi07G010670Watermelon (97103) v2lsiwmbB395
Lsi07G010670Wax gourdlsiwgoB535
Lsi07G010670Wax gourdlsiwgoB569
Lsi07G010670Bottle gourd (USVL1VR-Ls)lsilsiB143
Lsi07G010670Cucumber (Gy14) v1cgylsiB530
Lsi07G010670Cucurbita maxima (Rimu)cmalsiB324
Lsi07G010670Cucurbita maxima (Rimu)cmalsiB452
Lsi07G010670Cucurbita maxima (Rimu)cmalsiB617
Lsi07G010670Cucurbita maxima (Rimu)cmalsiB776
Lsi07G010670Cucurbita moschata (Rifu)cmolsiB313
Lsi07G010670Cucurbita moschata (Rifu)cmolsiB439
Lsi07G010670Cucurbita moschata (Rifu)cmolsiB605
Lsi07G010670Cucurbita moschata (Rifu)cmolsiB767
Lsi07G010670Cucurbita pepo (Zucchini)cpelsiB066
Lsi07G010670Cucurbita pepo (Zucchini)cpelsiB183
Lsi07G010670Cucurbita pepo (Zucchini)cpelsiB474
Lsi07G010670Cucurbita pepo (Zucchini)cpelsiB722
Lsi07G010670Wild cucumber (PI 183967)cpilsiB227
Lsi07G010670Wild cucumber (PI 183967)cpilsiB476
Lsi07G010670Cucumber (Chinese Long) v2culsiB228
Lsi07G010670Cucumber (Chinese Long) v2culsiB468
Lsi07G010670Melon (DHL92) v3.5.1lsimeB446
Lsi07G010670Melon (DHL92) v3.5.1lsimeB459
Lsi07G010670Watermelon (Charleston Gray)lsiwcgB389
Lsi07G010670Watermelon (Charleston Gray)lsiwcgB395
Lsi07G010670Watermelon (97103) v1lsiwmB429
Lsi07G010670Watermelon (97103) v1lsiwmB453
Lsi07G010670Cucumber (Gy14) v2cgyblsiB217
Lsi07G010670Melon (DHL92) v3.6.1lsimedB462
Lsi07G010670Melon (DHL92) v3.6.1lsimedB477
Lsi07G010670Silver-seed gourdcarlsiB146
Lsi07G010670Silver-seed gourdcarlsiB368
Lsi07G010670Silver-seed gourdcarlsiB389