Lsi07G000880 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAGAAGGAAGGCAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAAAACGCCAAGAAGAGGAAGCCCGATGCGACCCACAATCAAGATGCCCATAACCCCACCAATGATAGTGAAAACAATGTATCTGAGGCACTTCCATTGGAGCCCTTCAGCTTTTTTCTGGAAGAGTTTCAGACGGCTAATGAAGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGGTACTTTACTAATCTGGATCATATTCTCGTAACATCTTTGGAGTGTTTAATTGCTTTTGGCATTCTAATTAGCCGTTTTAGTAAAATGGTACTTGAAGTATGGTTGATAGAGCCTAATTGTGTGTGAACTAATCTGATTTTTTTTTTTATGATTGGAGAATTTTGTAGATAGATGTATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAGACCTTGGTGAAACATATCAAGGAAGCGTTTGGGTCATCGTGGAAAGAAGTTATTTGTAAAGGGGAACTCTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCGATTGAACTTCTAAAGTAAGATGGAGACTGCTTTTCTGCTAGTATTGATATTTATGGAATGAGTGCCGCCTGCTTTTGTCTAACTTATTTTTATTCATCAGGGGTTTTCGATCCTTAACTAAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTAGTTACAAGTTTCTGTTCATGCTCTTTTCTCTTTTAGATGATTCAGAGATACGAGTAACATATGTTTTTGTTGTTTAATAATGTTTCAAGTTTGTTTTGTTCACATATTTCGTCAATTGAATGCTTGTCGTATATCAACGCCATAGAGTTGGGATGATAATCGCTTACATTTTGCTAGCTGGAACAAGTGGGAAAAACTCCACGATATGTTTTTAGACTTCTAGAGTATTCAAAGTCGTATCTCTATTTTGAAACCCTCTTAGTTTCAAAATTTTGGGTTTGGGAGATGAAGATAATTCAAATAATCATCAGAGGCAAAAGCACTGCTGAATTTGATGGTTTGCACGTCAGTCTGATCCTGTATTTTTATAACTTTTGCTCTTAATTGTCCTGATTTCAGAACCTGCCGTTCTCTTTGTGCTTAGTTTTTGTTTTGATCTTCATGGTCACATAATTAATTATGAATAGTGTTTGTAGTATGCTGCTTTTCTTGATGAGCTTTGAAAGTCAAAGCAATGATTTAGCTTCTTGATTCTTGAACACATATCAAGTAACAATATTCTGCAATAGCGATCTGTGATTTTTATTGCTCTATTATTTTTTTAGAAACTGGGTGTCTTGGCCATTTACTGGGTTGCAAGTTATTTCATATTTTTGTGGTGAAGATGTGTTGTGCATCCGTCCTACTTGTTTACTTTATTGGGTTTGGGAAATGATGACAAGCTAGAAAAATCTCTCAGATGCAGCTGCTATGCTGAACTTGATATTTGCACGTCAGTCTGATCCCATATTCTCAATGACATTTGTCATTTCTGAGCTTCTGAATGCTAGACTTGTGTTTACTTGTCATATTTTTTGGTTTTTTAAATATCGATAAAGAAGAAGGTATTTTAGCATTTCCCTTCAACCTCTTGAAACAAACATTTACATCTATAACTTTTCCTGCTTTTAATTTTGTGTTTCCCATCATTCTTTAAGTTTTTGTACACCCATGTTATGCACAGATCTGTTATTTTTATATGAAATCGTCAGCTGAACTCCCAATCTTATAGTCAGCTGCCTGTGCTGGCTACAATTTTGTTTTCTTATTTTTATGTTTGGGAAATGATGACAAAATTGAAATGTTAAACAGAGGTAGATACTGTGCTGAACTCTATTGCACGTCAGTCTGATCCCTATAATTGTTTATTGGGTGTAATCTAAGCACTTACTATGGAAAGTATTTATTTCTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGAGATTCTGGGTTTTGTACTTCTGTTATGATTTGGATCATTATCCCAAATCCTCATATCTGCTGAATTGGCAATCAAAGATCCTTTTGAATTGGCCAAAATCCTTTTGATCAAACGAAACTGCACCTCCTCAGACCTGCATGTTGTCATAGTACTAGATTAGTATCATTCCAAGTGACATCTTATTTCAATTTTCTGAAACTGTCCGTAATGCAATCTTTTCAGCTGCATCATCATTTGATTTCTTAAAATCTACAGTTGTCAGTGTTGATTTCTTAAAATCTACAGTTGTCAGTGTTGGTTTTCAGTTGTGTGATTTTTATGGACGTGCTGAAGGGATTGACCATAAGTTTCTTGAACTGTTATTGTTTTTCCCTTTATGATGGGTGCAGGTACAGCTGTTGAAGAACCGTGTAAACATTGCGAGTGGTACACCGAGCAGGTTAGCTTTCAGTACTGGGTTTATCACTATTGGTTCAAGAGTTCCAGTTCTAGGATTTTGTTTCTGATAGGAGTTCTGTTGATTATGGGTGGAGTAAAATAAATATTGCAAAATCTACAACCTTCTTGCTCTGGATCTACCACCTCTTGCACTGATATTTATAGTTCATTTATTTTCTTTCCATTCATTTCTAAAGGTTGTCAACTGTTACACTGATCCTTCGTCACATTCTCTTCTGTATCAATTTTAGGATTAAAAAATTGATTGAAATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATTGTGCTCGACGTTCAACCAGATGTTAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGGTTTGAACCTCGTTTATAACTCCTCTCAATTTTCCTAATGTACGTTTAAATCTTTCGTTCTGTGCTCTTAGATTGTGAAAATACAAATTAAAAAAAAATGTTTTGGTTTAGATATGGAAAAATTGATCATTGGACTCTCGACATTCTTACTCATAAAATTCATATTGCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCACGAGTAGTCGAGGGCGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTTCTCGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGTGAATAAAGTACCAACAAAGTTGAAACTTAGACCAGCGCTTCTGTTAATGTATCCTCAAATTTATCAATTCTCTCAAATTAATTTAATCTCTTGATCGTTTTTCCCTGCCCTCCATTCCTGTATTCCAATTTGGTTGGGTTGTACCAAAATTTTGCAACCTGAGCTGAGTGCCCTATTGTTGTAGTTTTGCTTATAGTTACCGAAATATATCTGAAAATGGTCTACTTTTCTTGAAGTCAGAGCTATGTGAAACCTTATACCGAAGGTGGTGTTGTACATTTTTTTTATCTCCCATTTCAAAATATATAATAACATTTTTCCCCATAAATTGATGAAATACAAATATAATCCCAGGTTTAGCTTGGCTGTGTATGGGGATTTCTGTACAGTAGCAAATTAGAGACTTAAATGAGATTGACTCAATTTTG CTTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAGAAGGAAGGCAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAAAACGCCAAGAAGAGGAAGCCCGATGCGACCCACAATCAAGATGCCCATAACCCCACCAATGATAGTGAAAACAATGTATCTGAGGCACTTCCATTGGAGCCCTTCAGCTTTTTTCTGGAAGAGTTTCAGACGGCTAATGAAGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGATAGATGTATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAGACCTTGGTGAAACATATCAAGGAAGCGTTTGGGTCATCGTGGAAAGAAGTTATTTGTAAAGGGGAACTCTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCGATTGAACTTCTAAAGGGTTTTCGATCCTTAACTAAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTACAGCTGTTGAAGAACCGTGTAAACATTGCGAGTGGTACACCGAGCAGGATTAAAAAATTGATTGAAATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATTGTGCTCGACGTTCAACCAGATGTTAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCACGAGTAGTCGAGGGCGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTTCTCGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGTGAATAAAGTACCAACAAAGTTGAAACTTAGACCAGCGCTTCTGTTAATGTATCCTCAAATTTATCAATTCTCTCAAATTAATTTAATCTCTTGATCGTTTTTCCCTGCCCTCCATTCCTGTATTCCAATTTGGTTGGGTTGTACCAAAATTTTGCAACCTGAGCTGAGTGCCCTATTGTTGTAGTTTTGCTTATAGTTACCGAAATATATCTGAAAATGGTCTACTTTTCTTGAAGTCAGAGCTATGTGAAACCTTATACCGAAGGTGGTGTTGTACATTTTTTTTATCTCCCATTTCAAAATATATAATAACATTTTTCCCCATAAATTGATGAAATACAAATATAATCCCAGGTTTAGCTTGGCTGTGTATGGGGATTTCTGTACAGTAGCAAATTAGAGACTTAAATGAGATTGACTCAATTTTG ATGGGGGGTTTAGAGAAGGAAGGCAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAAAACGCCAAGAAGAGGAAGCCCGATGCGACCCACAATCAAGATGCCCATAACCCCACCAATGATAGTGAAAACAATGTATCTGAGGCACTTCCATTGGAGCCCTTCAGCTTTTTTCTGGAAGAGTTTCAGACGGCTAATGAAGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGATAGATGTATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAGACCTTGGTGAAACATATCAAGGAAGCGTTTGGGTCATCGTGGAAAGAAGTTATTTGTAAAGGGGAACTCTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCGATTGAACTTCTAAAGGGTTTTCGATCCTTAACTAAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTACAGCTGTTGAAGAACCGTGTAAACATTGCGAGTGGTACACCGAGCAGGATTAAAAAATTGATTGAAATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATTGTGCTCGACGTTCAACCAGATGTTAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCACGAGTAGTCGAGGGCGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTTCTCGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGTGAATAA MGGLEKEGKASEASLRNPRKKRKQRPPNKPKNAKKRKPDATHNQDAHNPTNDSENNVSEALPLEPFSFFLEEFQTANEVQVSSLEFESMKDRCILGPPESSVQDDKTLVKHIKEAFGSSWKEVICKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSLTKECHAVKLFSKHMKIEEQVQLLKNRVNIASGTPSRIKKLIEIEALGLSRLAVIVLDVQPDVKGYSLFSLPQVRDEFWDLYKSYLHPRVVEGELRICLFGPLQPSRKRRKKEVASPGE
BLAST of Lsi07G000880 vs. Swiss-Prot
Match: CMS1_RAT (Protein CMSS1 OS=Rattus norvegicus GN=Cmss1 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.7e-13 Identity = 47/147 (31.97%), Postives = 86/147 (58.50%), Query Frame = 1
BLAST of Lsi07G000880 vs. Swiss-Prot
Match: CMS1_MOUSE (Protein CMSS1 OS=Mus musculus GN=Cmss1 PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.6e-13 Identity = 48/147 (32.65%), Postives = 86/147 (58.50%), Query Frame = 1
BLAST of Lsi07G000880 vs. Swiss-Prot
Match: CMS1_DANRE (Protein CMSS1 OS=Danio rerio GN=cmss1 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.7e-11 Identity = 77/263 (29.28%), Postives = 121/263 (46.01%), Query Frame = 1
BLAST of Lsi07G000880 vs. Swiss-Prot
Match: CMS1_HUMAN (Protein CMSS1 OS=Homo sapiens GN=CMSS1 PE=1 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 9.7e-11 Identity = 72/259 (27.80%), Postives = 123/259 (47.49%), Query Frame = 1
BLAST of Lsi07G000880 vs. Swiss-Prot
Match: CMS1_XENLA (Protein CMSS1 OS=Xenopus laevis GN=cmss1 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10 Identity = 79/269 (29.37%), Postives = 123/269 (45.72%), Query Frame = 1
BLAST of Lsi07G000880 vs. TrEMBL
Match: A0A0A0KUA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017160 PE=4 SV=1) HSP 1 Score: 462.2 bits (1188), Expect = 4.4e-127 Identity = 237/274 (86.50%), Postives = 254/274 (92.70%), Query Frame = 1
BLAST of Lsi07G000880 vs. TrEMBL
Match: M5XLJ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009444mg PE=4 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 4.9e-78 Identity = 166/285 (58.25%), Postives = 203/285 (71.23%), Query Frame = 1
BLAST of Lsi07G000880 vs. TrEMBL
Match: A0A067LFJ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23821 PE=4 SV=1) HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75 Identity = 165/288 (57.29%), Postives = 208/288 (72.22%), Query Frame = 1
BLAST of Lsi07G000880 vs. TrEMBL
Match: A0A061EKJ3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_020062 PE=4 SV=1) HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75 Identity = 164/290 (56.55%), Postives = 207/290 (71.38%), Query Frame = 1
BLAST of Lsi07G000880 vs. TrEMBL
Match: A0A061EJS9_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_020062 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 2.5e-74 Identity = 164/291 (56.36%), Postives = 207/291 (71.13%), Query Frame = 1
BLAST of Lsi07G000880 vs. TAIR10
Match: AT2G43110.1 (AT2G43110.1 unknown protein) HSP 1 Score: 257.7 bits (657), Expect = 8.3e-69 Identity = 145/275 (52.73%), Postives = 190/275 (69.09%), Query Frame = 1
BLAST of Lsi07G000880 vs. NCBI nr
Match: gi|659107923|ref|XP_008453922.1| (PREDICTED: protein CMSS1 [Cucumis melo]) HSP 1 Score: 465.7 bits (1197), Expect = 5.7e-128 Identity = 243/274 (88.69%), Postives = 253/274 (92.34%), Query Frame = 1
BLAST of Lsi07G000880 vs. NCBI nr
Match: gi|449468740|ref|XP_004152079.1| (PREDICTED: protein CMSS1 [Cucumis sativus]) HSP 1 Score: 462.2 bits (1188), Expect = 6.3e-127 Identity = 237/274 (86.50%), Postives = 254/274 (92.70%), Query Frame = 1
BLAST of Lsi07G000880 vs. NCBI nr
Match: gi|645232023|ref|XP_008222671.1| (PREDICTED: protein CMSS1 [Prunus mume]) HSP 1 Score: 303.1 bits (775), Expect = 4.9e-79 Identity = 169/286 (59.09%), Postives = 207/286 (72.38%), Query Frame = 1
BLAST of Lsi07G000880 vs. NCBI nr
Match: gi|596287299|ref|XP_007225753.1| (hypothetical protein PRUPE_ppa009444mg [Prunus persica]) HSP 1 Score: 299.3 bits (765), Expect = 7.1e-78 Identity = 166/285 (58.25%), Postives = 203/285 (71.23%), Query Frame = 1
BLAST of Lsi07G000880 vs. NCBI nr
Match: gi|1009139293|ref|XP_015887049.1| (PREDICTED: protein CMSS1 [Ziziphus jujuba]) HSP 1 Score: 296.2 bits (757), Expect = 6.0e-77 Identity = 169/295 (57.29%), Postives = 213/295 (72.20%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|